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* gnu: openmpi@5: Remove reference to GCC and other build tools.Ludovic Courtès2024-10-25
| | | | | | | | | | | This removes GCC from the direct references of openmpi@5. * gnu/packages/mpi.scm (openmpi-5)[arguments]: Replace arguments entirely instead of using ‘substitute-keyword-arguments’. Reintroduce ‘remove-absolute’ phase. Remove ‘find-opensm-headers’ and ‘remove-logs’ phases, which are no longer needed. Change-Id: Ia3b25230488ca13310cd5bb2ae45f6990e906fa5
* gnu: hwloc: Update to 2.11.2.Philippe SWARTVAGHER2024-10-24
| | | | | | | * gnu/packages/mpi.scm (hwloc): Update to 2.11.2. Change-Id: I19c1b9b073ff55e8174d25a6f11048db34d6acdf Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* build-systems: gnu: Export %default-gnu-imported-modules and ↵Maxim Cournoyer2024-08-31
| | | | | | | | | | | | | | | | | | | | | %default-gnu-modules. Until now users would have to cargo cult or inspect the private %default-modules variable of (guix build-systems gnu) to discover which modules to include when extending the used modules via the #:modules argument. The renaming was automated via the command: $ git grep -l %gnu-build-system-modules | xargs sed 's/%gnu-build-system-modules/%default-gnu-imported-modules/' -i * guix/build-system/gnu.scm (%gnu-build-system-modules): Rename to... (%default-gnu-imported-modules): ... this. (%default-modules): Rename to... (%default-gnu-modules): ... this. Export. (dist-package, gnu-build, gnu-cross-build): Adjust accordingly. Change-Id: Idef307fff13cb76f3182d782b26e1cd3a5c757ee
* gnu: openmpi: Set default version to 4.x.Romain GARBAGE2024-08-19
| | | | | | | | * gnu/packages/mpi.scm (openmpi-4): New variable. (openmpi): Redefine variable. Change-Id: If5bb4429c935982ddaa1a5acbd728367ebbfd6fd Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add openmpi-5.Romain GARBAGE2024-08-19
| | | | | | | * gnu/packages/mpi.scm (openmpi-5): New variable. Change-Id: I048692b2e928077c9cfa9fb8076ceb356251e1db Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add mpich-ofi.Romain GARBAGE2024-08-19
| | | | | | | * gnu/packages/mpi.scm (mpich-ofi): New variable. Change-Id: I577fa8fc15ffe7df82d737721ca5a2e034c1e43a Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: mpich: Update to 4.2.2.Romain GARBAGE2024-08-14
| | | | | | | | * gnu/packages/mpi.scm (mpich): Update to 4.2.2. [native-inputs]: Add python-minimal. Change-Id: I9f3e42cb58c399a89835ac38dcfdd9dd11efe210 Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: hwloc: Update to 2.11.1.Ludovic Courtès2024-07-18
| | | | | | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.11.1. [native-inputs]: Add BASH. Co-authored-by: Philippe SWARTVAGHER <phil.swart@gmx.fr> Change-Id: If5531cb82911833153b0e795e9f20b0d0ae940c2
* gnu: hwloc: Update to 2.10.0.Philippe SWARTVAGHER2024-06-13
| | | | | | | * gnu/packages/mpi.scm (hwloc): Update to 2.10.0. Change-Id: If3971c18542dd3d2d03fa48f5d440d38c6f827a7 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hwloc: Remove dependency on graphics libraries when cross-compiling.Ludovic Courtès2024-04-04
| | | | | | | * gnu/packages/mpi.scm (hwloc-1)[inputs]: Remove dependency on graphics libraries when cross-compiling. Change-Id: I698ac3f8aadda634f6753bdeba0f5fbd77e608df
* gnu: openmpi: Update to 4.1.6.Ludovic Courtès2023-11-15
| | | | * gnu/packages/mpi.scm (openmpi): Update to 4.1.6.
* gnu: hwloc: Update to 2.9.3.Ludovic Courtès2023-11-15
| | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.9.3.
* gnu: openmpi: Enable PMIx.Lars Bilke2023-09-14
| | | | | | * gnu/packages/mpi.scm (openmpi)[arguments]: Pass “--with-pmix=internal”. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hwloc: Update to 2.9.2.Philippe SWARTVAGHER2023-07-11
| | | | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.9.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add updater input properties for R and Python packages.Ludovic Courtès2023-05-31
| | | | | | * gnu/packages/cran.scm (r-glue, r-xfun, r-vctrs) (r-lifecycle): Turn comment about r-knitr into 'properties' field. * gnu/packages/mpi.scm (python-mpi4py)[properties]: New field.
* gnu: python-mpi4py: Update home-page.Liliana Marie Prikler2023-05-28
| | | | | * gnu/packages/mpi.scm (python-mpi4py)[home-page]: Use “github.com” instead of “bitbucket.com”.
* gnu: python-mpi4py: Update to 3.1.4.Ludovic Courtès2023-05-24
| | | | * gnu/packages/mpi.scm (python-mpi4py): Update to 3.1.4.
* gnu: openmpi: Update to 4.1.5.Ludovic Courtès2023-04-24
| | | | * gnu/packages/mpi.scm (openmpi): Update to 4.1.5.
* gnu: Purge pre-1.3.0 deprecated packages.Bruno Victal2023-04-07
| | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (deeptools): Remove variable. * gnu/packages/efi.scm (efi_analyzer): Ditto. * gnu/packages/guile.scm (guile-2.2/bug-fix, guile-json): Ditto. * gnu/packages/image.scm (libjpeg): Ditto. * gnu/packages/kde.scm (kdevplatform): Ditto * gnu/packages/linphone.scm (linphoneqt): Ditto. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): Ditto. * gnu/packages/mpi.scm (hwloc-2.0): Ditto. * gnu/packages/music.scm (python-abjad, zlfo): Ditto. * gnu/packages/perl.scm (perl-base, perl-parent): Ditto. * gnu/packages/tryton.scm (python-trytond): Ditto. * gnu/packages/video.scm (gnome-mpv): Ditto. * tests/graph.scm: Use guile-json-1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hwloc: Update to 2.9.1.Philippe SWARTVAGHER2023-04-07
| | | | | | | | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.9.1. Patch to skip tests requiring /sys on non-x86 systems should not be necessary anymore, as https://github.com/open-mpi/hwloc/pull/570 has been merged in this new version. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hwloc: Skip failing test on non-x86 systems.Simon South2023-02-27
| | | | | | | | * gnu/packages/mpi.scm (hwloc-2)[arguments]<#:phases>: Rename "skip-test-that-requires-/sys" phase to "skip-tests-that-require-/sys" and expand to skip additional test requiring /sys on non-x86 systems. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hwloc: Remove obsolete comments.Simon South2023-02-27
| | | | | | | | | | hwloc 2.x become the default with commit 8ec7ca22d3, "gnu: hwloc: Default to 2.x.". * gnu/packages/mpi.scm (hwloc-1): Remove obsolete comment. (hwloc-2): Remove obsolete comment. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Fix openmpi related packages.Christopher Baines2023-02-27
| | | | | | | | This makes these package definitions compatible with the openmpi package which uses gexps as of f45fc72c282bc14da7212b4acb8fe9707e53aad0. * gnu/packages/mpi.scm (openmpi-c++, java-openmpi, openmpi-thread-multiple)[arguments]: Use gexps.
* gnu: openmpi: Use gexps.Ludovic Courtès2023-02-23
| | | | * gnu/packages/mpi.scm (openmpi)[arguments]: Use gexps.
* gnu: hwloc: Update to 2.9.0.Ludovic Courtès2023-01-27
| | | | | | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.9.0. [arguments]: Add 'skip-test-that-requires-/sys' phase. (%openmpi-setup): Set 'HWLOC_SYNTHETIC' environment variable. * gnu/packages/opencl.scm (pocl)[arguments]: In 'set-HOME' phase, also set 'HWLOC_SYNTHETIC'.
* gnu: java-openmpi: Remove unused module import.Marius Bakke2022-11-11
| | | | | * gnu/packages/mpi.scm (java-openmpi)[arguments]: Don't import (guix build syscalls).
* gnu: Fix various lint issues in synopsis and descriptions.Vagrant Cascadian2022-10-31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/android.scm (etc1tool)[synopsis]: Drop trailing period. * gnu/packages/bioinformatics.scm (mudskipper)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-async-log-attributes-1)[synopsis]: Likewise. (rust-atomic-polyfill-1)[synopsis]: Likewise. (rust-modifier-0.1)[synopsis]: Likewise. (rust-openssl-macros-0.1)[synopsis]: Likewise. (rust-syn-mid-0.5)[synopsis]: Likewise. (rust-toml-edit-0.14)[synopsis]: Likewise. (rust-valuable-derive-0.1)[synopsis]: Likewise. (rust-inflections-1)[synopsis]: Likewise. * gnu/packages/databases.scm (python-databases)[synopsis]: Likewise. * gnu/packages/games.scm (liquidwar6)[synopsis]: Likewise. * gnu/packages/golang.scm (go-golang.org-x-sync-errgroup)[synopsis]: Likewise. * gnu/packages/guile-xyz.scm (guile-config)[synopsis]: Likewise. * gnu/packages/haskell-web.scm (ghc-hxt-xpath)[synopsis]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-string-qq)[synopsis]: Likewise. * gnu/packages/machine-learning.scm (python-lap)[synopsis]: Likewise. (python-pyro-api)[synopsis]: Likewise. * gnu/packages/messaging.scm (python-librecaptcha)[synopsis]: Likewise. * gnu/packages/python-check.scm (python-pytest-cram)[synopsis]: Likewise. * gnu/packages/python-web.scm (python-jschema-to-python)[synopsis]: Likewise. (python-sarif-om)[synopsis]: Likewise. (python-socksio)[synopsis]: Likewise. (python-msrest)[synopsis]: Likewise. * gnu/packages/tor.scm (torsocks)[synopsis]: Likewise. * gnu/packages/cran.scm (r-rlist)[synopsis]: Remove leading article. * gnu/packages/crates-io.scm (rust-clippy-lints-0.0.153)[synopsis]: Likewise. (rust-simplelog-0.11)[synopsis]: Likewise. * gnu/packages/samba.scm (wsdd)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-spki-0.4)[synopsis]: Remove trailing whitespace. * gnu/packages/golang.scm (go-github-com-mattn-go-zglob)[description]: Remove leading whitespace. * gnu/packages/haskell-check.scm (ghc-crypto-cipher-tests)[description]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-ctype)[synopsis]: Remove trailing whitespace. * gnu/packages/mpi.scm (openmpi-thread-multiple)[description]: Remove leading whitespace. * gnu/packages/node-xyz.scm (node-string-decoder)[synopsis]: Remove trailing whitespace.
* gnu: openmpi: Only build with valgrind on supported systems.Efraim Flashner2022-07-12
| | | | | | * gnu/packages/mpi.scm (openmpi)[inputs]: Wrap valgrind in if-supported macro. [arguments]: Adjust configure-flags based on if valgrind is present.
* gnu: hwloc: Update to 2.8.0Philippe SWARTVAGHER2022-07-06
| | | | | | * gnu/packages/mpi.scm (hwloc): Update to 2.8.0 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: openmpi: Update to 4.1.4.Tobias Geerinckx-Rice2022-06-05
| | | | * gnu/packages/mpi.scm (openmpi): Update to 4.1.4.
* gnu: openmpi: Remove trailing #t.Ludovic Courtès2022-04-11
| | | | * gnu/packages/mpi.scm (openmpi)[arguments]: Remove trailing #t.
* gnu: openmpi: Update to 4.1.3.Ludovic Courtès2022-04-11
| | | | * gnu/packages/mpi.scm (openmpi): Update to 4.1.3.
* gnu: openmpi: Remove input labels.Ludovic Courtès2022-04-11
| | | | * gnu/packages/mpi.scm (openmpi)[inputs]: Remove input labels.
* gnu: hwloc: Remove trailing #t.Ludovic Courtès2022-04-11
| | | | | * gnu/packages/mpi.scm (hwloc-1)[arguments]: Remove trailing #t. (hwloc-2)[arguments]: Likewise.
* gnu: hwloc@1: Use 'target-arm32?' in conditional.Ludovic Courtès2022-04-11
| | | | | | | Suggested by Maxime Devos. * gnu/packages/mpi.scm (hwloc-1)[inputs]: Use 'target-arm32?' rather than custom code.
* gnu: hwloc: Remove input labels.Ludovic Courtès2022-04-11
| | | | | * gnu/packages/mpi.scm (hwloc-1)[inputs]: Remove labels. (hwloc-2)[inputs]: Use 'modify-inputs'.
* gnu: hwloc@1: Update to 1.11.13.Philippe SWARTVAGHER2022-04-11
| | | | | | | | * gnu/packages/patches/hwloc-1-test-btrfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mpi.scm (hwloc-1): Use it and update to 1.11.13. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu: openmpi: Update to 4.1.2Philippe SWARTVAGHER2022-03-29
| | | | | | * gnu/packages/mpi.scm (openmpi): Update to 4.1.2 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hwloc: Update to 2.7.1.Philippe SWARTVAGHER2022-03-25
| | | | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.7.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: mpich: Remove input labels and trailing #t in phases.Ludovic Courtès2022-01-17
| | | | | * gnu/packages/mpi.scm (mpich)[inputs]: Remove labels. [arguments]: Remove trailing #t from phases.
* gnu: mpich: Allow compilation with GCC 10.Ludovic Courtès2022-01-17
| | | | | | | | Fixes <https://issues.guix.gnu.org/53320> Reported by Clément Barthelemy <clement.barthelemy@inria.fr>. * gnu/packages/mpi.scm (mpich)[arguments]: Add 'define-gfortran-wrapper' phase.
* gnu: hwloc: Update to 2.7.0.Philippe SWARTVAGHER2021-12-17
| | | | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.7.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Simplify package inputs.Ludovic Courtès2021-12-13
| | | | | | | | This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
* Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus2021-12-05
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| * gnu: Add openmpi-c++.Ricardo Wurmus2021-12-02
| | | | | | | | * gnu/packages/mpi.scm (openmpi-c++): New variable.
* | gnu: Use 'search-input-file' when looking for *.so and *.a.Ludovic Courtès2021-07-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use 'search-input-file' when looking for *.a and *.so. * gnu/packages/emulators.scm (dolphin-emu): Likewise. * gnu/packages/engineering.scm (lepton-eda): Likewise. (pcb): Likewise. * gnu/packages/golang.scm (go-1.4): Likewise. (go-1.14): Likewise. * gnu/packages/haskell.scm (ghc-7): Likewise. * gnu/packages/irods.scm (irods): Likewise. * gnu/packages/language.scm (python2-tegaki-pygtk): Likewise. * gnu/packages/lisp-xyz.scm (sbcl-lzlib): Likewise. (sbcl-cl-gobject-introspection): Likewise. (sbcl-cl-ana): Likewise. (sbcl-cl-libuv): Likewise. (sbcl-cl-async): Likewise. (sbcl-mcclim): Likewise. (sbcl-zstd): Likewise. (sbcl-cl-opengl): Likewise. (sbcl-lev): Likewise. (sbcl-cl-glfw3): Likewise. * gnu/packages/machine-learning.scm (tensorflow): Likewise. * gnu/packages/messaging.scm (utox): Likewise. * gnu/packages/mpi.scm (java-openmpi): Likewise. * gnu/packages/music.scm (jack-select): Likewise. * gnu/packages/pascal.scm (fpc): Likewise. * gnu/packages/python-crypto.scm (python-libnacl): Likewise. * gnu/packages/python-xyz.scm (python-cairocffi): Likewise. (python-pyev): Likewise. (python-pytidylib): Likewise. * gnu/packages/radio.scm (unixcw): Likewise. * gnu/packages/rust.scm (rust-1.32): Likewise. * gnu/packages/security-token.scm (opensc): Likewise. (python-pyscard): Likewise. * gnu/packages/selinux.scm (python-setools): Likewise. * gnu/packages/spice.scm (libcacard): Likewise. * gnu/packages/telephony.scm (libtgvoip): Likewise.
* | gnu: Use 'search-input-directory' when looking for C/C++ library headers.Ludovic Courtès2021-07-24
|/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/arcan.scm (arcan)[arguments]: Use 'search-input-directory' for "include/libdrm" and "include/apr-1". * gnu/packages/bioinformatics.scm (sailfish): Likewise for jellyfish. * gnu/packages/boost.scm (boost-for-irods): Likewise for libcxx headers. * gnu/packages/cedille.scm (cedille): Likewise for IAL headers. * gnu/packages/compression.scm (snappy-with-clang6): Likewise for libcxx headers. * gnu/packages/cups.scm (hplip): Likewise for libusb headers. * gnu/packages/emulators.scm (pcsxr): Likewise for libcdio headers. * gnu/packages/game-development.scm (python2-renpy): Likewise for fribidi headers. * gnu/packages/games.scm (pokerth): Likewise for libircclient. * gnu/packages/guile-xyz.scm (guile-persist): Likewise for Guile. * gnu/packages/hurd.scm (hurd): Likewise for libtirpc. * gnu/packages/irods.scm (irods, irods-client-icommands): Likewise for libcxx, catch2, and nlohmann-json-cpp. * gnu/packages/julia.scm (julia): Use 'search-input-file' for libuv's errno.h. * gnu/packages/kde-pim.scm (kdepim-runtime): Use 'search-input-directory' for "include/KF5". (kmessagelib): Likewise. * gnu/packages/kde.scm (kdeconnect): Likewise. * gnu/packages/llvm.scm (clang-runtime-3.5): Likewise for libtirpc. * gnu/packages/mpi.scm (openmpi): Likewise for "include/infiniband". * gnu/packages/pumpio.scm (pumpa): Use 'search-input-file' for "tidy.h" and "aspell.h". * gnu/packages/radio.scm (dream): Use 'search-input-file' and 'search-input-directory' for pulseaudio, sndfile, etc. * gnu/packages/selinux.scm (policycoreutils): Likewise for PAM and libaudit. * gnu/packages/serialization.scm (avro-cpp-1.9-for-irods): Likewise for libcxx. * gnu/packages/sync.scm (nextcloud-client): Likewise for "include/KF5". * gnu/packages/video.scm (mkvtoolnix): Likewise for "include/gtest". (libopenshot): Likewise for "include/UnitTest++". * gnu/packages/virtualization.scm (criu): Likewise for libnl3 and for protobuf file.
* gnu: hwloc: Update to 2.5.0.Ludovic Courtès2021-06-14
| | | | * gnu/packages/mpi.scm (hwloc-2): Update to 2.5.0.
* gnu: openmpi: Update to 4.1.1.Tobias Geerinckx-Rice2021-05-02
| | | | * gnu/packages/mpi.scm (openmpi): Update to 4.1.1.
* gnu: openmpi: Update to 4.1.0.Ludovic Courtès2021-03-19
| | | | * gnu/packages/mpi.scm (openmpi): Update to 4.1.0.
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