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* Merge remote-tracking branch 'savannah/master' into gnome-teamChristopher Baines2024-03-20
|\ | | | | | | Change-Id: Iec8e15b79c6fde516294c2bfcaf8ee3575b1f745
| * gnu: combinatorial-blas: Skip failing tests.Romain GARBAGE2024-03-19
| | | | | | | | | | | | | | * gnu/packages/maths.scm (combinatorial-blas): Add new phase. Change-Id: Ifefb2b17e6758547d38290753a7cd338032a6abb Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge remote-tracking branch 'savannah/master' into gnome-teamChristopher Baines2024-03-16
|\| | | | | | | Change-Id: I775274c2693536e2efa36c9abca4c54c5c458e26
| * gnu: combinatorial-blas: Update source hash.Christopher Baines2024-03-14
| | | | | | | | | | | | | | | | Diffoscope shows there are changes, but they don't look significant. * gnu/packages/maths.scm (combinatorial-blas): Update source hash. Change-Id: I32db6df0ef7c652572b1e874fe22175a4b66af6e
| * gnu: hypre: Honor the #:tests? flag.Lars Bilke2024-03-12
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hypre)[arguments]: Adjust 'check phase to honor the #:tests? flag. Change-Id: I475fabd7d9f73ed320b97a4767830d82190c2b15 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: petsc: Add tunable property.Lars Bilke2024-03-12
| | | | | | | | | | | | | | | | | | Tested with some real-world simulations on multpiple HPC systems. * gnu/packages/maths.scm (petsc)[properties]: Add tunable? flag. Change-Id: I81588d0556c4176f29d7ab760322cd7aec271f12 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2024-03-10
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| * gnu: nauty: Update to 2.8.8.Nicolas Goaziou2024-03-08
| | | | | | | | | | | | * gnu/packages/maths.scm (nauty): Update to 2.8.8. Change-Id: I741b398e7ab367a7c82ee8cc454f1790524b5db6
| * gnu: units: Update to 2.23.Andy Tai2024-03-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (units): Update to 2.23. Change-Id: Ia1b3df68c125631255cb3d28d2bf55d3148ee462 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2024-03-02
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| * gnu: giza: Update to 1.4.1.Sharlatan Hellseher2024-02-27
| | | | | | | | | | | | * gnu/packages/maths.scm (giza): Update to 1.4.1. Change-Id: I7e6087e22cc6dea4a680fa45db155e42a724b50d
| * gnu: petsc: Reduce closure size.Lars Bilke2024-02-27
| | | | | | | | | | | | | | | | | | | | | | | | Reduces closure size from 828 MiB to 463 MiB (44%) by removing references to build dependencies such as GCC. * gnu/packages/maths.scm (petsc)[arguments]: Add ‘clear-reference-to-compiler’ phase. In ‘clean-install’ phase, also remove “configure-hash”. Change-Id: I2e6900747b2118546f0a39ceb109b3f2f90e6949 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2024-02-25
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| * gnu: arpack-ng: Update to 3.9.1.Andreas Enge2024-02-14
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (arpack-ng): Update to 3.9.1. Drop patch. * gnu/packages/patches/arpack-ng-propagate-rng-state.patch: Remove file. * gnu/packages/maths.scm (dist_patch_DATA): Unregister patch. Change-Id: I33a666c3a88fb2f6791c8d698eeb054a831103fc
| * gnu: arpack-ng: Add preprocessor flag.Romain GARBAGE2024-02-14
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (arpack-ng): Add configure flag for building ISO C binding headers. Change-Id: Iddfd67094ffafc3cabd88353e3839e5e903b804a Signed-off-by: Andreas Enge <andreas@enge.fr>
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2024-02-13
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| * gnu: frama-c: Update to 27.1.Julien Lepiller2024-02-08
| | | | | | | | | | | | | | * gnu/packages/maths.scm (frama-c): Update to 27.1. (why3): Update to 1.6.0. Change-Id: I74191e4274d58a88a772413875fbf7de4d243fec
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2024-02-03
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| * gnu: python-kiwisolver: Update to 1.4.5.Ricardo Wurmus2024-01-16
| | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (python-kiwisolver): Update to 1.4.5. [build-system]: Use pyproject-build-system. [propagated-inputs]: Add python-typing-extension. [native-inputs]: Add python-cppy, python-pytest, and python-setuptools-scm. Change-Id: Iea75440dc58fa342dcf4a2a381b6dcc17e71e618
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2024-01-01
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| * gnu: scotch: Update to 7.0.4Romain GARBAGE2023-12-25
| | | | | | | | | | | | | | * gnu/packages/maths.scm (scotch): Update to version 7.0.4. Change-Id: I493113ecc1694e8812fb38d8e4641398eb174b34 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2023-12-20
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| * gnu: wxmaxima: Update to 23.11.0Andy Tai2023-12-05
| | | | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 23.11.0 Change-Id: Ifd1d705ec21f8f437eeb6364dea7d51638567eb7 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| * gnu: Add python-quadpy.Felix Gruber2023-12-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (python-quadpy): New variable. Change-Id: Icb5a60920465bc5861cf32ffe5dc44a9088af890 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-orthopy.Felix Gruber2023-12-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (python-orthopy): New variable. Change-Id: I75e528f30d285666b8012a9cbc5cbb7e28aaf764 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-ndim.Felix Gruber2023-12-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (python-ndim): New variable. Change-Id: I543f1f5e195f4f2fd5bd70f9ce29ec750a24439b Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-accupy.Felix Gruber2023-12-04
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (python-accupy): New variable. * gnu/packages/patches/python-accupy-fix-use-of-perfplot.patch: New file. * gnu/packages/patches/python-accupy-use-matplotx.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patch files. Change-Id: I0222665d54a36830844b3b33e3dcb546741cfaa1 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: octave: Update to 8.4.0Andy Tai2023-12-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (octave-cli): Update to 8.4.0 Change-Id: I88fe31a25a3fbfc28985f5f0b51cb042369f4462 Signed-off-by: Eric Bavier <bavier@posteo.net>
* | Merge branch 'master' into HEADLiliana Marie Prikler2023-12-03
|\| | | | | | | Change-Id: I3f5d121162d98ef2ae61a62c4da3b0fd19d864e8
| * gnu: scilab: Set default SCIHOME value.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): Set default SCIHOME value. [argmuments](phases)[rewrap-scilab-cli]: Set default -scihome option to respect XDG base dirs specification. Change-Id: I9b55758a3ca1fbc523c3e40e891a2462f3246390 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: scilab: Add phase set-version.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): Add phase set-version. [arguments](phases): Add phase set-version. Change-Id: I0e461a229931d159196cae73d1db584250c579b2 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: scilab: Update to 2024.0.0.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): Update to 2024.0.0. Remove patch. [native-inputs]: Switch to AUTOCONF-2.71. [inputs]: Switch to HDF5-1.10; add LIBARCHIVE. [arguments]: Add ‘fix-linking’ phase. Change-Id: Ie1af4dc620cee644388f6b8acf88ea50c4148b65 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: scilab: Reindent.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): Reindent. Change-Id: I4813863a8ef5cb36de597ed31bcce0b34cfb1160 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: scilab: Add phase rewrap-scilab-cli.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): Add phase rewrap-scilab-cli. Change-Id: Ia3ca5df1a4795c34b6c1cdc8c3b0d7cc2badf0cb Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: scilab: Use gexp for tcl and tk libraries.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): Use gexp for tcl and tk libraries. [argments](configure-flags): Use gexp for tcl and tk libraries. Change-Id: I31fe9a9e2afd9b6266a2e7a2c7044b3c9d0dfa4f Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: scilab: Activate tests and disable failing tests.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): Activate tests and disable failing tests. [arguments]: (tests?): Activate tests. (phases): [remove-desktop-files]: Extend and rename to restrain-to-scilab-cli. [disable-failing-tests]: Add phase. Change-Id: Icfec349c6efe14e7787ba8d385e5d51f82be82ea Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: scilab: Remove uneeded code.Nicolas Graves2023-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (scilab): [source](snippet): Remove directory Visual-Studio-settings and file Scilab.sln. [arguments](configure-flags): Remove uneeded FFLAGS environment variable set. [arguments](phases): prebuild: Remove uneeded SCIHOME setting code. Change-Id: I71c044e19617bf556bbe95e7ba0cdbd716921055 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2023-11-19
|\| | | | | | | Change-Id: I62da840b7600f2d3d8541e666d09e2f2a1b7d8c4
| * gnu: elemental: Update package style.Sharlatan Hellseher2023-11-18
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (elemental): Update package style, shift order of package fields. [arguments]: Use G-expressions. {phases}: Remove trailing #f from each lambda. Change-Id: Ib961eb99159e1206963041bd7014dca032a21441 Signed-off-by: Eric Bavier <bavier@posteo.net>
| * gnu: elemental: Remove input labels.Sharlatan Hellseher2023-11-18
| | | | | | | | | | | | | | * gnu/packages/maths.scm (elemental)[inputs]: Remove labels. Change-Id: I239b56cb5871d5cb2dbd587502c647a37beb30b7 Signed-off-by: Eric Bavier <bavier@posteo.net>
| * gnu: elemental: Update to 0.87.7-0.6eb15a0.Sharlatan Hellseher2023-11-18
| | | | | | | | | | | | | | | | | | | | | | | | | | The build of elemental is failed on GCC 7+: https://github.com/elemental/Elemental/issues/254 Fixed but not released yet in merge request: https://github.com/elemental/Elemental/pull/259 * gnu/packages/maths.scm (elemental): Update to 0.87.7-0.6eb15a0. Change-Id: I333f1de160489035f1a8875173abdd57c03ef777 Signed-off-by: Eric Bavier <bavier@posteo.net>
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2023-11-04
|\| | | | | | | Change-Id: I88d3789460d1a89917451d80405d89a2824006ac
| * gnu: Add popf.Liliana Marie Prikler2023-10-27
| | | | | | | | * gnu/packages/maths.scm (popf): New variable.
| * gnu: gnuplot: Update to 5.4.9.Paul A. Patience2023-10-25
| | | | | | | | | | | | | | * gnu/packages/maths.scm (gnuplot): Update to 5.4.9. [arguments]<#:configure-flags>: Add --with-qt=no. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| * gnu: nauty: Update to 2.8.6.Nicolas Goaziou2023-10-24
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (nauty): Update to 2.8.6. [arguments]<#:phases>: Remove unnecessary phases. Add a phase to fix location of installed ".pc" files. Change-Id: I65db0b2dde6e7a9dda396598d744e21ce7c78200
* | Merge branch 'master' into gnome-teamLiliana Marie Prikler2023-10-23
|\| | | | | | | Change-Id: Ib6f55bebef2fb235fa59fd5442102a3e0ace3191
| * gnu: trilinos-for-dealii-openmpi: Fix build.Paul A. Patience2023-10-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This fixes the error error: ‘std::hypot’ has not been declared caused by using an older version of gcc, but requires some patches to placate newer versions of gcc. * gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[origin]: Add patches. [native-inputs]: Remove gcc-7. * gnu/packages/patches/teuchos-remove-duplicate-using.patch: New file. * gnu/packages/patches/tpetra-remove-duplicate-using.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Propagate suitesparse-* inputs referenced in header files.David Elsing2023-10-21
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (suitesparse-amd, suitesparse-btf, suitesparse-camd, suitesparse-colamd, suitesparse-ccolamd, gklib-suitesparse, suitesparse-cholmod, suitesparse-cxsparse, suitesparse-klu, suitesparse-ldl, suitesparse-rbio, suitesparse-mongoose, suitesparse-spex, suitesparse-spqr, suitesparse-umfpack)[inputs]: Move relevant suitesparse-* packages ... [propagated-inputs]: ... to here. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: nomad-optimizer: Update to 4.3.1.Paul A. Patience2023-10-17
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (nomad-optimizer): Update to 4.3.1. [native-inputs]: Remove python-wrapper and python-cython. Add openmpi. [arguments]: Use G-expressions. Remove #:imported-modules and #:modules. <#:configure-flags>: Remove -DBUILD_INTERFACE_PYTHON=ON. <#:phases>: Remove 'fix-sources-for-build' phase. Rename 'fix-sources-for-tests' phase to 'fix-tests' and update it. Add 'mpi-setup' phase. Signed-off-by: Christopher Baines <mail@cbaines.net>
| * gnu: Add fast-downward.Liliana Marie Prikler2023-10-15
| | | | | | | | * gnu/packages/maths.scm (fast-downward): New variable.
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