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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2024-10-30 19:14:11 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-11-01 12:16:22 +0100 |
| commit | a007045b7c6d26a8a051356c51481beaed6a2bfd (patch) | |
| tree | cebc88dcda8b926b7afd198437062b5fbe0c0f76 /gnu/packages | |
| parent | 7ea473d0cd6c7dbe955b2f4a0bbb6ffb844b3732 (diff) | |
| download | guix-a007045b7c6d26a8a051356c51481beaed6a2bfd.tar guix-a007045b7c6d26a8a051356c51481beaed6a2bfd.tar.gz | |
gnu: Add r-netid.
* gnu/packages/bioinformatics.scm (r-netid): New variable.
Change-Id: Icf8fd23c6f24252350c783faa7f34f35eb1fbce2
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1cfcc4aa56..3c1c180b7c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1062,6 +1062,50 @@ simultaneously considered.") with DNA methylation micro-array data.") (license license:unlicense)))) +(define-public r-netid + (let ((commit "6ad1ffdd64a6584cc1d392524dad8e248d4590a8") + (revision "1")) + (package + (name "r-netid") + (version (git-version "0.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/WWXkenmo/NetID_package") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1blm5ljql91xmbyxxwm3vw8iz8d4ir9gm7wfnapqhfdbjvg4l21q")))) + (properties `((upstream-name . "NetID"))) + (build-system r-build-system) + (propagated-inputs (list r-doparallel + r-dorng + r-glmnet + r-hmisc + r-igraph + r-irlba + r-lmtest + r-matrix + r-mclust + r-pracma + r-raceid + r-rarpack + r-reticulate + r-robustrankaggreg + r-rsvd + r-seurat)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/WWXkenmo/NetID_package") + (synopsis + "Scalable method to infer fate-specific networks from single-cell data") + (description + "This package provides a method to sample cells from single-cell data. +It also generates an aggregate profile on a pruned K-Nearest Neighbor graph. +This approach leads to an improved gene expression profile for quantifying +gene regulations.") + (license license:expat)))) + (define-public r-numbat (let ((commit "4ab7752e7d267a3f443756675728521a9b0a7295") (revision "1")) |