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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2024-10-30 19:08:31 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-11-01 12:15:09 +0100 |
| commit | 7ea473d0cd6c7dbe955b2f4a0bbb6ffb844b3732 (patch) | |
| tree | d453dc12bd4c18587cac80d216535531a69d5ec5 /gnu/packages | |
| parent | 325f46b5789488fe013aab62cbe0ee90103ed097 (diff) | |
| download | guix-7ea473d0cd6c7dbe955b2f4a0bbb6ffb844b3732.tar guix-7ea473d0cd6c7dbe955b2f4a0bbb6ffb844b3732.tar.gz | |
gnu: Add r-raceid.
* gnu/packages/cran.scm (r-raceid): New variable.
Change-Id: I337463c66040179f5a4a1622fb759a87ebd2344a
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/cran.scm | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cdb54913f0..dc2a77593a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13127,6 +13127,53 @@ files.") environment within Shiny.") (license license:expat))) +(define-public r-raceid + (package + (name "r-raceid") + (version "0.3.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "RaceID" version)) + (sha256 + (base32 "0zqas0dfsvcbjzv2b83zy13pxyzfhh81xrfbzxq8a7ykk0nyrx26")))) + (properties `((upstream-name . "RaceID"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster + r-coop + r-fateid + r-fnn + r-fpc + r-ggplot2 + r-harmony + r-ica + r-igraph + r-irlba + r-leiden + r-locfit + r-mass + r-matrix + r-matrixstats + r-pheatmap + r-princurve + r-quadprog + r-randomforest + r-rcolorbrewer + r-rcpp + r-rtsne + r-runner + r-umap + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=RaceID") + (synopsis + "Algorithm for inferring cell types from single-cell RNA-seq data") + (description + "This tool provides an algorithm to identify rare cell types in +single-cell data. It also identifies abundant cell types. The method is +based on transcript counts obtained with unique molecular identifies.") + (license license:gpl3))) + (define-public r-rafalib (package (name "r-rafalib") |