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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-11-20 15:14:55 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-11-20 15:21:24 +0100
commit614a8977cbac1f7ac27a908764eeb5542f32e52e (patch)
treee1658bb6b3de129b0c055d1519e97816e1b744f4
parentd6a1cd7caeec3c3acf71e67e668c818a7a702963 (diff)
downloadguix-614a8977cbac1f7ac27a908764eeb5542f32e52e.tar
guix-614a8977cbac1f7ac27a908764eeb5542f32e52e.tar.gz
gnu: ngs-java: Update to 1.2.2.
* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2. [arguments]: Remove build phase "fix-java-symlink-installation".
-rw-r--r--gnu/packages/bioinformatics.scm22
1 files changed, 2 insertions, 20 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 955aa48f55..017f233cba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2389,26 +2389,8 @@ simultaneously.")
(srfi srfi-26))
,@(package-arguments ngs-sdk))
((#:phases phases)
- `(alist-cons-after
- 'enter-dir 'fix-java-symlink-installation
- (lambda _
- ;; Only replace the version suffix, not the version number in
- ;; the directory name. Reported here:
- ;; https://github.com/ncbi/ngs/pull/4
- (substitute* "Makefile.java"
- (((string-append "\\$\\(subst "
- "(\\$\\(VERSION[^\\)]*\\)),"
- "(\\$\\([^\\)]+\\)),"
- "(\\$\\([^\\)]+\\)|\\$\\@)"
- "\\)")
- _ pattern replacement target)
- (string-append "$(patsubst "
- "%" pattern ","
- "%" replacement ","
- target ")"))))
- (alist-replace
- 'enter-dir (lambda _ (chdir "ngs-java") #t)
- ,phases))))))
+ `(modify-phases ,phases
+ (replace 'enter-dir (lambda _ (chdir "ngs-java") #t)))))))
(inputs
`(("jdk" ,icedtea6 "jdk")
("ngs-sdk" ,ngs-sdk)))