From 614a8977cbac1f7ac27a908764eeb5542f32e52e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 20 Nov 2015 15:14:55 +0100
Subject: gnu: ngs-java: Update to 1.2.2.

* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
---
 gnu/packages/bioinformatics.scm | 22 ++--------------------
 1 file changed, 2 insertions(+), 20 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 955aa48f55..017f233cba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2389,26 +2389,8 @@ (define-public ngs-java
                           (srfi srfi-26))
                          ,@(package-arguments ngs-sdk))
            ((#:phases phases)
-            `(alist-cons-after
-              'enter-dir 'fix-java-symlink-installation
-              (lambda _
-                ;; Only replace the version suffix, not the version number in
-                ;; the directory name.  Reported here:
-                ;; https://github.com/ncbi/ngs/pull/4
-                (substitute* "Makefile.java"
-                  (((string-append "\\$\\(subst "
-                                   "(\\$\\(VERSION[^\\)]*\\)),"
-                                   "(\\$\\([^\\)]+\\)),"
-                                   "(\\$\\([^\\)]+\\)|\\$\\@)"
-                                   "\\)")
-                    _ pattern replacement target)
-                   (string-append "$(patsubst "
-                                  "%" pattern ","
-                                  "%" replacement ","
-                                  target ")"))))
-              (alist-replace
-               'enter-dir (lambda _ (chdir "ngs-java") #t)
-               ,phases))))))
+            `(modify-phases ,phases
+               (replace 'enter-dir (lambda _ (chdir "ngs-java") #t)))))))
     (inputs
      `(("jdk" ,icedtea6 "jdk")
        ("ngs-sdk" ,ngs-sdk)))
-- 
cgit v1.2.3