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* services: openssh: Collect all keys for all users.Vivien Kraus2021-11-16
| | | | | | | | Fixes <https://issues.guix.gnu.org/51487> * gnu/services/ssh.scm (extend-openssh-authorized-keys): ensure that no key is forgotten. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* Revert "home-services: Demonadify 'on-first-login' handling."Efraim Flashner2021-11-16
| | | | | | | | This commit breaks building guix home guix home: error: reference to invalid output 'out' of derivation \ '/gnu/store/86zc4rijsswmfqnaq8rwixcxjl2zyl1c-on-first-login.drv' This reverts commit 4dcec60fa6a93dbc93bef2cdb91e3633c705579e.
* gnu: Add julia-sundials-jullJean-Baptiste Volatier2021-11-16
| | | | | | | * gnu/packages/julia-jll.scm (julia-sundials-jll): New variable. * gnu/packages/maths.scm (sundials-julia): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* Revert "gnu: Add cl-https-everywhere."Efraim Flashner2021-11-16
| | | | | | | | With thanks to jlicht on IRC: sbcl-package->cl-source-package assumes all inputs are packages which isn't the case here. This reverts commit e31d48d8db09e723727eeadbeea22d677f5d1d52.
* gnu: julia-pycall: Update to 1.92.5.Efraim Flashner2021-11-16
| | | | * gnu/packages/julia-xyz.scm (julia-pycall): Update to 1.92.5.
* build-system/julia: Enable Julia Pkg to find installed packages.Jean-Baptiste Volatier2021-11-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Julia's built-in package manager (Pkg) looks for packages in JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string encoding package UUID and SHA1 of files. The link-depot phase creates a link at the correct location to allow Pkg to find packages that were already installed by Guix. * guix/build/julia-build-system.scm (link-depot): New phase. (%package-path): Modified package path from packages/ to loadpath/. (project.toml->uuid): New procedure, retrive package uuid from TOML file. (precompile, check): Adjust to the change in paths. (%standard-phases): Add link-depot phase. (julia-build): Add julia-package-uuid keyword. * guix/build-system/julia.scm (julia-build): Also use the julia-package-uuid keyword. * gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll, julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll, julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll, julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll, julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll, julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll, julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll, julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll, julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll, julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll, julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll, julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll, julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll, julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll, julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll, julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll, julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll, julia-xorg-libxfixes-jll, julia-xorg-libxi-jll, julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll, julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll, julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll, julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll, julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll, julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll) [argument]: Adjust the order of the phases to the change in the julia-build-system. * gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus, julia-dataframes, julia-datavalues, julia-distances, julia-documenter, julia-dualnumbers, julia-ellipsisnotation, julia-expronicon, julia-fileio, julia-fixedpointnumbers, julia-functionwrappers, julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur, julia-geometrybasics, julia-imagemagick, julia-infinity, julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib, julia-optimtestproblems, julia-orderedcollections, julia-prettytables, julia-pycall, julia-quadmath, julia-safetests, julia-stackviews) [arguments]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory add package-name-uuid keyword argument to packages without Project.toml file. * gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add cl-https-everywhere.Pierre Neidhardt2021-11-16
| | | | | * gnu/packages/lisp-xyz.scm (cl-https-everywhere, sbcl-cl-https-everywhere): New variables.
* gnu: Add vernacular.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (cl-vernacular, sbcl-vernacular): New variables.
* gnu: Add fxml.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (cl-fxml, sbcl-fxml): New variables.
* gnu: Add xpath.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (cl-xpath, sbcl-xpath): New variables.
* gnu: Add overlord.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (cl-overlord, sbcl-overlord): New variables.
* gnu: Add cxml-rng.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (cl-cxml-rng, sbcl-cxml-rng): New variables.
* gnu: Add bit-smasher.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (cl-bit-smasher, ecl-bit-smasher, sbcl-bit-smasher): New variables.
* gnu: Add cl-base58.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (cl-base58, ecl-cl-base58, sbcl-cl-base58): New variables.
* gnu: Add exit-hooks.Pierre Neidhardt2021-11-16
| | | | | * gnu/packages/lisp-xyz.scm (cl-exit-hooks, ecl-exit-hooks, sbcl-exit-hooks): New variables.
* gnu: Add cl-strftime.Pierre Neidhardt2021-11-16
| | | | | * gnu/packages/lisp-xyz.scm (cl-strftime, ecl-cl-strftime, sbcl-cl-strftime): New variables.
* gnu: Add sbcl-cl-tld.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (sbcl-cl-tld): New variable.
* gnu: sbcl-cl-webkit: Update to 3.2.0.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.2.0.
* gnu: sbcl-cmd: Update to 20211009.Pierre Neidhardt2021-11-16
| | | | * gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 20211009.
* services: cups: Update default timeouts.Tobias Geerinckx-Rice2021-11-16
| | | | | | | | Upstream raised these back in 2019 with CUPS 2.3.0. * gnu/services/cups.scm (<cups-configuration>): Raise default ‘multiple-operation-timeout’ and ‘timeout’ from 300 to 900 seconds. * doc/guix.texi (Printing Services): Adjust accordingly.
* gnu: guix-build-coordinator: Update to 0-37.200ffe7.Christopher Baines2021-11-15
| | | | | * gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-37.200ffe7.
* gnu: libuv-for-node: Update to 1.42.0.Jelle Licht2021-11-15
| | | | * gnu/packages/libevent.scm (libuv-for-node): Update to 1.42.0.
* gnu: node-lts: Update to 14.18.1 [security fixes].Jelle Licht2021-11-15
| | | | | | | | | * gnu/packages/node.scm (node-lts): Update to 14.18.1. [native-inputs]: Replace c-ares with c-ares-for-node. [inputs]: Replace c-ares with c-ares-for-node. Includes fixes for CVE-2021-22918, CVE-2021-22930, CVE-2021-22931, CVE-2021-22939, and CVE-2021-22940.
* gnu: llhttp-bootstrap: Update to 2.1.4 [security-fixes].Jelle Licht2021-11-15
| | | | | | * gnu/packages/node.scm (llhttp-bootstrap): Update to 2.1.4. Includes fixes for CVE-2021-22959 and CVE-2021-22960.
* gnu: Add c-ares-for-node.Jelle Licht2021-11-15
| | | | | | * gnu/packages/adns.scm (c-ares-for-node): New variable. Co-authored-by: Marius Bakke <marius@gnu.org>
* gnu: node: Add cpe-name.Jelle Licht2021-11-15
| | | | * gnu/packages/node.scm (node)[properties]: Add cpe-name.
* gnu: taskwarrior: Update to 2.6.1.Lenny Händler2021-11-15
| | | | | | * gnu/packages/task-management.scm (taskwarrior): Update to 2.6.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: emacs-helm: Update to 3.8.1.Nicolas Goaziou2021-11-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.8.1.
* gnu: pdfarranger: Update to 1.8.0.Nicolas Goaziou2021-11-15
| | | | * gnu/packages/pdf.scm (pdfarranger): Update to 1.8.0.
* gnu: julia: Fix llvm-julia version.Jean-Baptiste Volatier2021-11-15
| | | | | | | | | | | | | | | | | | | | | LLVM bundled in the binary julia distributed by upstream has its version with a "jl" suffix. The llvm-julia package does not have this suffix, which causes some packages (e. g. LLVM.jl) to fail to load. LLVM.jl does this in order to be sure that it is loading a LLVM as patched for julia and not LLVM from the distribution which will lack the correct patches on distribs other than GUIX. I guess there might be other packages that rely on this, so we should fix our llvm-julia package. * gnu/packages/julia.scm (llvm) [source]: Add missing upstream patch [arguments]: Add configure-flag to set a "jl" suffix to llvm version (julia)[arguments]: Symlink llvm to llvm-11jl.so Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: emacs-consult: Update to 0.13.Nicolas Goaziou2021-11-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.13.
* gnu: emacs-exwm: Update to 0.26.Nicolas Goaziou2021-11-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-exwm): Update to 0.26.
* gnu: emacs-rustic: Update to 2.1.Nicolas Goaziou2021-11-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-rustic): Update to 2.1.
* gnu: emacs-marginalia: Update to 0.10.Nicolas Goaziou2021-11-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.10.
* gnu: borgmatic: Fix typo in description.Nicolas Goaziou2021-11-15
| | | | * gnu/packages/backup.scm (borgmatic): Fix typo, "software" being a mass noun.
* gnu: hpcguix-web: Update to 0.2.0.Ludovic Courtès2021-11-15
| | | | | | | | | | | | * gnu/packages/web.scm (hpcguix-web): Update to 0.2.0. [arguments]: In 'wrap-program' phase, add guile-zlib to DEPS. [native-inputs]: Add GUILE. [inputs]: Add GUILE-ZLIB, GUILE-COMMONMARK, and GUILE-JSON. [propagated-inputs]: Remove. These were pointless. * gnu/services/web.scm (<hpcguix-web-configuration>)[address, port]: New fields. * doc/guix.texi (Web Services): Document them. * gnu/tests/web.scm (%hpcguix-web-os): Add 'address'.
* gnu: python-pytorch: Update to 1.10.0.Ludovic Courtès2021-11-15
| | | | | * gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.0. * gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust.
* gnu: Add python-minikanren.Ryan Prior2021-11-15
| | | | | | * gnu/packages/python-xyz.scm (python-minikanren): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-etuples.Ryan Prior2021-11-15
| | | | | | * gnu/packages/python-xyz.scm (python-etuples): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-cons.Ryan Prior2021-11-15
| | | | | | * gnu/packages/python-xyz.scm (python-cons): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-logical-unification.Ryan Prior2021-11-15
| | | | | | * gnu/packages/python-xyz.scm (python-logical-unification): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-multipledispatch.Ryan Prior2021-11-15
| | | | | | * gnu/packages/python-xyz.scm (python-multipledispatch): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: clang-toolchain: Add libomp.Ludovic Courtès2021-11-15
| | | | * gnu/packages/llvm.scm (make-clang-toolchain)[inputs]: Add LIBOMP.
* gnu: Add python-rtree.Vinicius Monego2021-11-15
| | | | | | * gnu/packages/geo.scm (python-rtree): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: Add python-ta-lib.Foo Chuan Wei2021-11-15
| | | | | | * gnu/packages/finance.scm (python-ta-lib): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: Add cl-chemboy.Foo Chuan Wei2021-11-15
| | | | | | | * gnu/packages/lisp-xyz.scm (cl-chemboy, ecl-chemboy, sbcl-chemboy): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: Add cl-chemical-compounds.Foo Chuan Wei2021-11-15
| | | | | | | * gnu/packages/lisp-xyz.scm (cl-chemical-compounds, ecl-chemical-compounds, sbcl-chemical-compounds): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: Add cl-periodic-table.Foo Chuan Wei2021-11-15
| | | | | | | * gnu/packages/lisp-xyz.scm (cl-periodic-table, ecl-periodic-table, sbcl-periodic-table): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: python-scanpy: Run tests conditionally.Ricardo Wurmus2021-11-15
| | | | | * gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Respect TESTS? argument.
* gnu: guile-netlink: Update to 1.1.Julien Lepiller2021-11-15
| | | | * gnu/packages/guile-xyz.scm (guile-netlink): Update to 1.1.
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