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* gnu: Add r-annotationhub.Ricardo Wurmus2017-08-17
| | | | * gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
* gnu: Add r-interactivedisplaybase.Ricardo Wurmus2017-08-17
| | | | * gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
* gnu: american-fuzzy-lop: Update to 2.49b.Efraim Flashner2017-08-17
| | | | * gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
* gnu: american-fuzzy-lop: Add support for non-Intel architectures.Efraim Flashner2017-08-17
| | | | | | | * gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for non-Intel targets. [arguments]: On non-Intel systems, add phase to disable non-Intel architecture warning and remove incompatible binaries.
* gnu: Add mgba.Nicolas Goaziou2017-08-17
| | | | * gnu/packages/games.scm (mgba): New public variable.
* gnu: cuirass: Update to 0.0.1-7.6f85bc0.Ricardo Wurmus2017-08-17
| | | | | | * gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0. [arguments]: Add guile-git and guile-bytestructures to the load path. [inputs]: Remove git, add guile-git and guile-bytestructures.
* gnu: python-cython: Update to 0.26.Efraim Flashner2017-08-17
| | | | | | | * gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26. [source]: Remove patch. * gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add fbreader.Danny Milosavljevic2017-08-17
| | | | * gnu/packages/ebook.scm (fbreader): New variable.
* gnu: Add liblinebreak.Danny Milosavljevic2017-08-17
| | | | * gnu/packages/ebook.scm (liblinebreak): New variable.
* gnu: python-cryptography-vectors: Update to 2.0.3.Tobias Geerinckx-Rice2017-08-16
| | | | * gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
* gnu: python-cryptography: Update to 2.0.3.Tobias Geerinckx-Rice2017-08-16
| | | | * gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
* gnu: limnoria: Update to 2017.08.03.Tobias Geerinckx-Rice2017-08-16
| | | | * gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
* gnu: cbatticon: Update to 1.6.6.Tobias Geerinckx-Rice2017-08-16
| | | | * gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
* gnu: Add gpick.Julien Lepiller2017-08-16
| | | | * gnu/packages/image.scm (gpick): New variable.
* gnu: fossil: Update to 2.2.ng02017-08-16
| | | | | | * gnu/packages/version-control.scm (fossil): Update to 2.2. [source]: Add uri for older versions. [arguments]: Enable previously disabled test.
* gnu: connman: Update to 1.35.Efraim Flashner2017-08-16
| | | | * gnu/packages/connman.scm (connman): Update to 1.35.
* gnu: Add ltris.Kei Kebreau2017-08-16
| | | | * gnu/packages/games.scm (ltris): New variable.
* gnu: Add ghc-gitrev.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-gitrev): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-geniplate-mirror.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-monadplus.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-monadplus): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-fail.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-fail): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-edisoncore.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-edisoncore): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-edisonapi.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-edisonapi): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-murmur-hash.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-murmur-hash): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-data-hash.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-data-hash): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: pspp: Update to 0.11.0.Efraim Flashner2017-08-16
| | | | | | This fixes CVE-2017-10791, CVE-2017-10792. * gnu/packages/statistics.scm (pspp): Update to 0.11.0.
* gnu: Add ghc-equivalence.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-equivalence): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-boxes.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-boxes): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-edit-distance.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-edit-distance): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-stmonadtrans.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-stmonadtrans): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ghc-strict.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (ghc-strict): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: cpphs: Update to 1.20.8.Alex Vong2017-08-16
| | | | | | * gnu/packages/haskell.scm (cpphs): Update to 1.20.8. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: font-google-noto: Use font-build-system.ng02017-08-16
| | | | | | | | | | * gnu/packages/fonts.scm (font-google-noto)[build-system]: Use font-build-system. [source]: Use url-fetch/zipbomb. [arguments]: Remove it. [native-inputs]: Remove it. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-mzr: Fix building on aarch64 and armhf.Efraim Flashner2017-08-16
| | | | * gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
* gnu: hdf4: Fix building on aarch64.Efraim Flashner2017-08-16
| | | | | * gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve detection and support for aarch64-linux.
* gnu: cgit: Don't build cgit's special 'git:src' input.Leo Famulari2017-08-15
| | | | | | | | | | This special version of Git is only used within the build process of cgit. We don't need to build it otherwise, so the package is removed with this commit. * gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10 package with an origin reference of the source code. (git@2.10): Remove variable.
* gnu: Fix memcached service startup.Christopher Baines2017-08-15
| | | | | | | | | | | | | | | | | | | | Memcached changes to the memcached user from root before writing the PID file. This means that it must be able to write the PID file as the memcached user. To make this work, create the /var/run/memcached directory when the service starts, make it owned by memcached, and change memcached to write the PID file to /var/run/memcached/pid. This wasn't picked up by the system test as the "service running" part was too permissive, and only failed on an error. Instead, test the response from calling start-service and check that the PID is a number. * gnu/services/databases.scm (memcached-activation): New variable. (memcached-shepherd-service): Change PID file location. (memcached-service-type): Extend the activation-service-type. * gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service running" test to check the response from the shepherd.
* gnu: Add dssi.Danny Milosavljevic2017-08-15
| | | | * gnu/packages/music.scm (dssi): New variable.
* gnu: Add emacs-highlight-symbol.Oleg Pykhalov2017-08-15
| | | | | | * gnu/packages/emacs.scm (emacs-highlight-symbol): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: fish-guix: Use new download URL.ng02017-08-15
| | | | | | * gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: p11-kit: Update to 0.23.8.Marius Bakke2017-08-15
| | | | * gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
* gnu: signify: Update to 22.Leo Famulari2017-08-15
| | | | * gnu/packages/crypto.scm (signify): Update to 22.
* gnu: diamond: Update to 0.9.10.Ben Woodcroft2017-08-15
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
* gnu: bcftools: Fix building on aarch64.Efraim Flashner2017-08-15
| | | | | | * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file. * gnu/packages/bioinformatics.scm (bcftools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Register it.
* Revert "gnu: pspp: Update to 0.11.0."Efraim Flashner2017-08-15
| | | | | | This FTBFS on x86_64 and i686. This reverts commit f4c808df5b99bbe6d7a307c69ad27da5b17703d1.
* gnu: youtube-dl: Update to 2017.08.13.Tobias Geerinckx-Rice2017-08-15
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
* gnu: e2fsprogs: Update to 1.43.5.Marius Bakke2017-08-15
| | | | | | | * gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5. [source]: Use patch.
* gnu: cvs: Fix CVE-2017-12836.Leo Famulari2017-08-14
| | | | | | * gnu/packages/patches/cvs-2017-12836.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/version-control.scm (cvs)[source]: Use it.
* gnu: git@2.10: Update to 2.10.4 [fixes CVE-2017-1000117].Marius Bakke2017-08-14
| | | | | | | ...also disable tests, since they broke after c9f4f56b24801718d89c2520b. * gnu/packages/version-control.scm (git@2.10): Update to 2.10.4. [arguments]: New field.
* gnu: gcc@7: Update to 7.2.0.Efraim Flashner2017-08-14
| | | | | * gnu/packages/gcc.scm (gcc@7): Update to 7.2.0. [source]: Switch to xz compression.
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