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* gnu: prrte: Record the absolute file name of ‘prted’.Ludovic Courtès2024-10-28
| | | | | | | | | | | | | | | | Previously a command like: guix shell --pure openmpi@5 openssh intel-mpi-benchmarks \ --with-input=openmpi@4=openmpi@5 slurm -- \ salloc -N2 -- mpirun -np 2 --map-by node IMB-MPI1 PingPong would silently fail due to ‘prted’ not being found in $PATH. * gnu/packages/parallel.scm (prrte)[arguments]: Add ‘patch-prted-reference’ phase. Change-Id: Iff30cb5a4dcc9e9cfe6638d518ee4f19561289a0 Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu: libtar: Patch CVEs. [security fixes]Nicolas Graves2024-10-28
| | | | | | | | | | | | | | This fixes CVE-2021-33643, CVE-2021-33644, CVE-2021-33645, CVE-2021-33646. * gnu/packages/compression.scm (libtar)[source]<patches>: Add patches here... * gnu/local.mk (dist_patch_DATA): ...and here. * gnu/packages/patches/libtar-CVE-2021-33643-CVE-2021-33644.patch, gnu/packages/patches/libtar-CVE-2021-33645-CVE-2021-33646.patch: New files. Signed-off-by: Andreas Enge <andreas@enge.fr> Change-Id: I60a6b753fddc1a0d08f96010ef3d57ec66c2251b
* gnu: Add owl.Juliana Sims2024-10-28
| | | | | | | * gnu/packages/scheme.scm (owl): New variable. Change-Id: Ibb242bbcdedb92419b59e05635e8a32e85afc24e Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu: gawk: Add search-paths.Efraim Flashner2024-10-28
| | | | | | * gnu/packages/gawk.scm (gawk)[search-paths]: New field. Change-Id: Idbf2709b793ebd58e1aae8d07698e1f3e816babd
* gnu: trealla: Update to 2.58.0.jgart2024-10-28
| | | | | | * gnu/packages/prolog.scm (trealla): Update to 2.58.0. Change-Id: Ibd2a982389a07c07523fa3a787f06e2013adcdfc
* gnu: Remove assimp-5.0.Nicolas Graves2024-10-28
| | | | | | | | This package is outdated, not used anymore in Guix and has a CVE. * gnu/packages/graphics.scm (assimp-5.0): Delete variable. Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: sbcl-classimp: Update to 0.0.0-1.6c74f38.Nicolas Graves2024-10-28
| | | | | | | | | | | | * gnu/packages/lisp-xyz.scm (sbcl-classimp): Update to 0.0.0-1.6c74f38. [inputs]: Replace assimp-5.0 by assimp. [arguments]<#:phases>: Adapt phase 'patch-assimp-lib-path. (cl-classimp): Simplify. (ecl-classimp): Simplify. Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: Add ghostwriter.Sughosha2024-10-28
| | | | | | | * gnu/packages/kde-office.scm (ghostwriter): New variable. Change-Id: I634e4ecab8c53aa67eb521f479d1acff6540c9fe Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: Remove ghostwriter.Sughosha2024-10-28
| | | | | | | * gnu/packages/text-editors.scm (ghostwriter): Remove variable. Change-Id: I3bf4f80a232539bad72dec1110734408d5054453 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: Remove boinc-server.Vitalii Koshura2024-10-28
| | | | | | | | | | boinc-server is not supposed to be installed this (or any other) packaged way. Also, it uses a completely different versioning scheme. * gnu/packages/distributed.scm (boinc-server): Delete variable. Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Change-Id: I85c7176424c7db65eb5233bfefab01c62a0d757c
* gnu: bpftrace: Update to 1.21.2.Ashish SHUKLA2024-10-28
| | | | | | | * gnu/packages/linux.scm (bpftrace): Update to 1.21.2. [arguments]<#:phases> Rename, and update "patch-paths" phase. Change-Id: If7180d4da8073914172296f46a3427ccdff22478
* gnu: Add python-astropy-minimal.Sharlatan Hellseher2024-10-27
| | | | | | * gnu/packages/astronomy.scm (python-astropy-minimal): New variable. Change-Id: Iae90a9d988647b6f8f81c0ccb871c156ee6dfe1e
* gnu: Add emacs-anaconda-mode.Rostislav Svoboda2024-10-27
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-anaconda-mode): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: I273c26cd66178d6f990bf0fca0432699c8bab202
* gnu: Add emacs-pythonic.Rostislav Svoboda2024-10-27
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-pythonic): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: Ie8f1322fbf8230d4b5ca258cb7ccacee1daa231a
* gnu: emacs-org-ref: Update to 3.1-0.732a20b.Cayetano Santos2024-10-27
| | | | | | | | | | | | | | | | | The reason to exclude openalex.el from this package doesn't hold anymore, see <https://github.com/jkitchin/org-ref/issues/1085>. Emacs-helm is already pulled from emacs-helm-bibtex, no need to do it here. Emacs-request is a new hard dependency. Emacs-ivy is not. * gnu/packages/emacs-xyz.scm (emacs-org-ref): Update to 3.1-0.732a20b. [arguments]: Remove EMACS-HELM and EMACS-IVY. Add EMACS-REQUEST. Change-Id: I04f4cb9ffacaaf25a3e844c8e1d1b194e41d90a9 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: I510bf7b74520c0cf7c128b88cb02e975a6df898a
* gnu: Add clingcon.Liliana Marie Prikler2024-10-27
| | | | * gnu/packages/potassco.scm (clingcon): New variable.
* gnu: Add clingo-lpx.Liliana Marie Prikler2024-10-27
| | | | * gnu/packages/potassco.scm (clingo-lpx): New variable.
* gnu: Add go-github-com-caarlos0-env.Artyom V. Poptsov2024-10-27
| | | | | | | * gnu/packages/golang-xyz.scm (go-github-com-caarlos0-env): New variable. Change-Id: If15faf6ebae7c94204b816a9d784e6b28d70be2e Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: yoshimi: Fix build.Giacomo Leidi2024-10-26
| | | | | | | | | | | yoshimi was failing because it was trying to create a directory inside the lv2 store tree. * gnu/packages/music.scm (yoshimi)[arguments]<configure-flags>: Explicitly set LV2_INSTALL_DIR. Change-Id: I697ba879e8633bee99fdfad1e876beca33d114f8 Signed-off-by: Artyom V. Poptsov <poptsov.artyom@gmail.com>
* gnu: mamba: Update to 2.6.Artyom V. Poptsov2024-10-26
| | | | | | | * gnu/packages/music.scm (mamba): Update to 2.6. [inputs]: Replace jack-1 with jack-2. Change-Id: Iff60e6f48624677096c6fae6be08a04edad52794
* gnu: java-mockito-1: Update source URL.Hartmut Goebel2024-10-26
| | | | * gnu/packages/java.scm (java-mockito-1) [source]: Update URL.
* gnu: java-jopt-simple: Update source URL and home page.Hartmut Goebel2024-10-26
| | | | | * gnu/packages/java.scm (java-jopt-simple) [source]: Update URL. [home-page]: Likewise.
* gnu: python-asyncstdlib: Update to 3.13.0.Sharlatan Hellseher2024-10-26
| | | | | | * gnu/packages/python-xyz.scm (python-asyncstdlib): Update to 3.13.0. Change-Id: I7b001c30d742710dc0ceecff276a03f2bff0d92b
* gnu: Add python-crosshair.Troy Figiel2024-10-26
| | | | | | | * gnu/packages/check.scm (python-crosshair): New variable. Change-Id: I7af183df882049c19d562cd15a23f3f3233309a9 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: Add python-icontract.Troy Figiel2024-10-26
| | | | | | | * gnu/packages/python-check.scm (python-icontract): New variable. Change-Id: I48dc21cbed1ff68356099b1c3db351427dff60c7 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: Add python-asyncstdlib.Troy Figiel2024-10-26
| | | | | | | * gnu/packages/python-xyz.scm (python-asyncstdlib): New variable. Change-Id: I2554c120e070b0c84a7228a20cfa22abfd84c846 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: emacs-elpher: Update to 3.6.4.Rodion Goritskov2024-10-26
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 3.6.4. Change-Id: I4587ed377edba6345e89276885d4845fc93b37b6 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: ugrep: Update to 7.0.0.Ashish SHUKLA2024-10-26
| | | | | | * gnu/packages/search.scm (ugrep): Update to 7.0.0. Change-Id: I761b7dce107428a919992e3c4966bfa7dabf5c62
* gnu: keepalived: Update to 2.3.1. [security fixes]Nicolas Graves2024-10-26
| | | | | | | | | | | This fixes CVE-2021-44225. * gnu/packages/cluster.scm (keepalived): Update to 2.3.1. [source]: Switch to git source. [arguments]: Improve style. Remove tailing #t. [native-inputs]: Add autoconf, automake. Change-Id: I51d3cb609b0368b61f021115177356593deffa8d
* gnu: kdiskmark: Update to 3.1.4. [security fixes]Nicolas Graves2024-10-26
| | | | | | | | | This fixes CVE-2022-40673. * gnu/packages/benchmark.scm (kdiskmark): Update to 3.1.4. [arguments]<#:configure-flags>: Adapt for polkit-qt. <#:phases>: Add phase 'inject-single-application-source. [inputs]: Add polkit-qt, single-application-qt5.
* gnu: busybox: Update to 1.37.0. [security fixes]Nicolas Graves2024-10-26
| | | | | | | This fixes CVE-2023-42363, CVE-2023-42364, CVE-2023-42365 and CVE-2023-42366. * gnu/packages/busybox.scm (busybox): Update to 1.37.0.
* gnu: Add calligra.Sughosha2024-10-26
| | | | | | | * gnu/packages/kde-office.scm: New file. * gnu/local.mk: Register it. Change-Id: Id114f80ba804ee2d0129b5a17722be2eda54250b
* gnu: fuzzel: Update to 1.11.1.Ashish SHUKLA2024-10-26
| | | | | | * gnu/packages/xdisorg.scm (fuzzel): Update to 1.11.1. Change-Id: I94e9b3b547df76a10037cb97a8d635d75e38855e
* gnu: Remove go-github-com-ipfs-go-ipfs-cmdkit-files.Sharlatan Hellseher2024-10-25
| | | | | | | | | | This package is not in use by any packages in Guix and not maintained upstream: "This repository has been archived by the owner on Apr 24, 2021. It is now read-only." * gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): Delete variable. Change-Id: I95e0295004f02442b7e40c92cf2dcc619c97207c
* gnu: linux-libre: Update the default package to the 6.11 series.Leo Famulari2024-10-25
| | | | | | | | * gnu/packages/linux.scm (linux-libre-version, linux-libre-gnu-revision, linux-libre-pristine-source, linux-libre-source, linux-libre, linux-libre-headers-latest): Use linux-libre 6.11. Change-Id: I4d4ef04d0a5fe22574a953747d5d41e3516c33cb
* gnu: qview: Update to 6.1.Sergey Trofimov2024-10-25
| | | | | | | | | | * gnu/packages/image-viewers.scm (qview): Update to 6.1. [inputs, native-inputs]: Use qt6. [arguments]: Disable broken tests. Workaround lrelease being resolved relative to qtbase instead of qttools. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: If1a72984e004167b97fdcdf9ae63f85c85dd7e1c
* gnu: knot: Update to 3.4.1.Ashish SHUKLA2024-10-25
| | | | | | | | | | * gnu/packages/dns.scm (knot): Update to 3.4.1. [source](patches) Add a patch. * gnu/packages/patches/knot-remove-runtime-deps.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it here. Change-Id: I2fcb61a161631954137eaf058bc7c6095fceef47 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add julia-multivariatepolynomials.Spencer King2024-10-25
| | | | | | | * gnu/packages/julia-xyz.scm (julia-multivariatepolynomials): New variable. Change-Id: Ib175d3779a5037841d77fe431e7c0221237daa10 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: julia-mutablearithmetics: Update to 1.4.6.Spencer King2024-10-25
| | | | | | | * gnu/packages/julia-xyz.scm (julia-mutablearithmetics): Update to 1.4.6. Change-Id: I856a25789d453cb4edc2d5b39930ecdb51ab7713 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add julia-statisticaltraits.Spencer King2024-10-25
| | | | | | | * gnu/packages/julia-xyz.scm (julia-statisticaltraits): New variable. Change-Id: I5ef338e3fcd92601e1e160d675d4bd2c4219e83f Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: prrte: Remove reference to GCC and other build tools.Ludovic Courtès2024-10-25
| | | | | | | | This reduces the closure of ‘prrte’ from 305 MiB to 99 MiB. * gnu/packages/parallel.scm (prrte)[arguments]: Add #:phases. Change-Id: Idc26cf5899dd5fa8378535fc8530dbdb3e20608d
* gnu: openmpi@5: Remove reference to GCC and other build tools.Ludovic Courtès2024-10-25
| | | | | | | | | | | This removes GCC from the direct references of openmpi@5. * gnu/packages/mpi.scm (openmpi-5)[arguments]: Replace arguments entirely instead of using ‘substitute-keyword-arguments’. Reintroduce ‘remove-absolute’ phase. Remove ‘find-opensm-headers’ and ‘remove-logs’ phases, which are no longer needed. Change-Id: Ia3b25230488ca13310cd5bb2ae45f6990e906fa5
* gnu: Add emacs-greader.Yuval Langer2024-10-24
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-greader): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: Ic5d33e363727e490b1e8ab7a0f3f14d06c870f2e
* gnu: Add emacs-show-font.Cayetano Santos2024-10-24
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-show-font): New variable. Change-Id: Icda53be5afa7960ca61c48a6ea0825f0d254cf9f Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add emacs-catppuccin-theme.emma thompson2024-10-24
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-catppuccin-theme): New variable. Change-Id: I0a8deb9cd88a7ea38615ee0db96e0707a4c3cf2a Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: emacs-ement: Update to 0.16.Arto Jantunen2024-10-24
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.16. Change-Id: I84eec8c4676d7ad3f50d8013b45a16630fe9ba31 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* build: Restrict access to daemon socket in tests.Reepca Russelstein2024-10-24
| | | | | | | | | | | | With the weak isolation available to the test daemon, it is essential to disallow untrusted access to it, as otherwise another local user can gain our user's credentials easily. * build-aux/test-env.in: ensure the daemon-socket directory is freshly-created with 0700 permissions. Change-Id: I742f70fc6fc28e5b4dc88d590eef3daf1b964670 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: kitsas: Update to version 5.7Saku Laesvuori2024-10-24
| | | | | | | * gnu/packages/finance.scm (kitsas): Update to 5.7. Change-Id: I3244fdf2af14970b10c87fb4a7e16b66f13a509f Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: system: Privilege programs after creating accounts.Dariqq2024-10-24
| | | | | | | | | | | | | | | | | | Ensure that users and groups are already created when the privileging script runs. The order these scripts appear in the folded activation-service depends on the order these services are instantiated in the operating-system. Fixes <https://issues.guix.gnu.org/73680>. * gnu/system.scm (operating-system-default-essential-services): Move privileged-program-service above account-service. (hurd-default-essential-services): Likewise. * gnu/tests/base.scm (%activation-os): New variable. (run-activation-test): New procedure. (%test-activation): New variable. Change-Id: I59a191c5519475f256e81bdf2dc4cb01b96c31fe Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: varnish: Improve style.Nicolas Graves2024-10-24
| | | | | | | | | * gnu/packages/web.scm (varnish): Improve style. [arguments]: Rewrite using gexps. [inputs]: Replace coreutils by coreutils-minimal, python by python-minimal. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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