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* gnu: perl-www-curl: Fix build with curl@7.69.1.Tobias Geerinckx-Rice2020-11-15
| | | | | | | | * gnu/packages/web.scm (perl-www-curl)[source]: Add perl-www-curl-fix-struct-void.patch. * gnu/packages/patches/perl-www-curl-remove-symbol.patch: Update. * gnu/packages/patches/perl-www-curl-fix-struct-void.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* doc: Remove superfluous comma.Matthew Kraai2020-11-14
| | | | | | * doc/guix.texi (Managing Software the Guix Way): Remove comma. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: cqfd: Update to 5.2.1.Maxim Cournoyer2020-11-14
| | | | * gnu/packages/docker.scm (cqfd): Update to 5.2.1.
* gnu: python-numba: Update to 0.51.2.Maxim Cournoyer2020-11-14
| | | | | | | | | | | | Fixes <https://issues.guix.gnu.org/43546>. * gnu/packages/python-xyz.scm (python-numba): Update to 0.51.2. [arguments]: Remove #:modules. [phases]{check}: Use add-installed-pythonpath instead of some ad-hoc solution. Set HOME. {remove-failing-tests}: Remove. [inputs]: Move to... [native-inputs]: ...here.
* gnu: python-llvmlite: Update to 0.34.0.Maxim Cournoyer2020-11-14
| | | | | | | | | | | This is in preparation of updating the broken python-numba package. * gnu/packages/llvm.scm (python-llvmlite): Update to 0.34.0. [arguments]: Enable tests. [phases]{patch-reference-to-llvmlite, skip-failing-tests} {set-compiler/linker-flags}: New phases. [inputs]: Update custom LLVM input and associated patches. [home-page]: Use HTTPS.
* gnu: llvm-9: Standardize patch level.Maxim Cournoyer2020-11-14
| | | | | | | | | | | | | | | Having a non-standard (different than 1) patch level requirement means the patches cannot be composed easily from different origins. The following command was used to remove one level from the llvm-9 patches: sed -e 's|^--- a/|--- |' -e 's|^+++ b/|+++ |' \ gnu/packages/patches/llvm-9* -i * gnu/packages/llvm.scm (llvm-9)[source]: Drop the patch-flags field. Re-indent list of patches. * gnu/packages/patches/llvm-9-fix-bitcast-miscompilation.patch: Strip one level. * gnu/packages/patches/llvm-9-fix-lpad-miscompilation.patch: Likewise. * gnu/packages/patches/llvm-9-fix-scev-miscompilation.patch: Likewise.
* gnu: Add kristall.nixo2020-11-14
| | | | | | * gnu/packages/web-browsers.scm (kristall): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: gmnisrv: Update to 0-1.d484ba0.Alexandru-Sergiu Marton2020-11-14
| | | | | | | | * gnu/packages/web.scm (gmnisrv): Update to 0-1.d484ba0. [arguments]: Remove the install-config phase. [propagated-inputs]: Add mailcap. Signed-off-by: Christopher Baines <mail@cbaines.net>
* services: gmnisrv: Export procedures and service type.Alexandru-Sergiu Marton2020-11-14
| | | | | | | | * gnu/services/web.scm: Export gmnisrv-configuration, gmnisrv-configuration?, gmnisrv-configuration-package, gmnisrv-configuration-config-file, gmnisrv-service-type. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: Add mailcap.Alexandru-Sergiu Marton2020-11-14
| | | | | | * gnu/packages/mail.scm (mailcap): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: emacs-evil-collection: Update to 20201113.Pierre Neidhardt2020-11-14
| | | | * gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20201113.
* doc: Document hg-fetch.Holger Peters2020-11-14
| | | | | | * doc/guix.texi (origin Reference): Add documentation for hg-fetch. Signed-off-by: Christopher Baines <mail@cbaines.net>
* guix: hg-download: Add hg-predicate.Holger Peters2020-11-14
| | | | | | | | | `hg-predicate' acts for mercurial repositories as `git-predicate' acts for git-repositories. * guix/hg-download.scm (hg-predicate): New procedure. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: emacs-helm-system-packages: Update to 1.10.2.Pierre Neidhardt2020-11-14
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-system-packages): Update to 1.10.2.
* doc: Fix Guix Build Coordinator agent configuration defaults.Christopher Baines2020-11-14
| | | | | * doc/guix.texi (Guix Build Coordinator): Fix some guix-build-coordinator-agent-configuration defaults.
* gnu: Add sx.宋文武2020-11-14
| | | | * gnu/packages/xdisorg.scm (sx): New variable.
* gnu: python-pykeepass: Update to 3.2.1.Tobias Geerinckx-Rice2020-11-14
| | | | | | * gnu/packages/python-crypto.scm (python-pykeepass): Update to 3.2.1. [propagated-inputs]: Substitute python-pycryptodomex for python-pycryptodome.
* gnu: python-pycryptodome: Note public-domain legacy.Tobias Geerinckx-Rice2020-11-14
| | | | | * gnu/packages/python-pycryptodome.scm (python-pycryptodome)[license]: Add public-domain.
* gnu: python-pycryptodome: Expand description.Tobias Geerinckx-Rice2020-11-14
| | | | | * gnu/packages/python-crypto.scm (python-pycryptodome)[synopsis, description]: Copy higher-level description from python-pycryptodomex.
* gnu: Add python-pycryptodomex.Tobias Geerinckx-Rice2020-11-14
| | | | | * gnu/packages/python-crypto.scm (python-pycryptodomex): New public variable.
* gnu: lua-resty-lrucache: Update to 0.10.Tobias Geerinckx-Rice2020-11-14
| | | | * gnu/packages/lua.scm (lua-resty-lrucache): Update to 0.10.
* gnu: lua-resty-core: Update to 0.1.18.Tobias Geerinckx-Rice2020-11-14
| | | | * gnu/packages/lua.scm (lua-resty-core): Update to 0.1.18.
* gnu: nginx-lua-module: Update to 0.10.16.Tobias Geerinckx-Rice2020-11-14
| | | | * gnu/packages/web.scm (nginx-lua-module): Update to 0.10.16.
* gnu: libgda: Update to 5.2.10.Tobias Geerinckx-Rice2020-11-14
| | | | | | * gnu/packages/gnome.scm (libgda): Update to 5.2.10. [source]: Generate git tag from version number. [native-inputs]: Add autoconf-archive.
* gnu: python-duniterpy: Update to 0.60.1.Tobias Geerinckx-Rice2020-11-14
| | | | * gnu/packages/finance.scm (python-duniterpy): Update to 0.60.1.
* gnu: inxi-minimal: Update to 3.1.09-1.Tobias Geerinckx-Rice2020-11-14
| | | | * gnu/packages/admin.scm (inxi-minimal): Update to 3.1.09-1.
* gnu: inspekt3d: Build with Guile 3.Ricardo Wurmus2020-11-13
| | | | | | | * gnu/packages/engineering.scm (inspekt3d) [source]: Add snippet to allow building with Guile 3.0. [inputs]: Replace guile-2.2 with guile-3.0. [propagated-inputs]: Replace guile-opengl with guile3.0-opengl.
* gnu: libfive: Update to 0-4.8ca1b86.Ricardo Wurmus2020-11-13
| | | | | * gnu/packages/engineering.scm (libfive): Update to 0-4.8ca1b86. [inputs]: Replace guile-2.2 with guile-3.0.
* gnu: julia: Update to 1.5.3.Tobias Geerinckx-Rice2020-11-13
| | | | | | * gnu/packages/julia.scm (julia): Update to 1.5.3. (libuv-julia): Update to 1fcc6d66f9df74189c74d3d390f02202bb7db953. (julia-patch): Update version. No change to patches.
* gnu: libwhich: Compile natively, too.Tobias Geerinckx-Rice2020-11-13
| | | | | | | This follows up on commit 12424b3ecfdf401c72804ddfa4b2fa2d8b1b68e5. * gnu/packages/julia.scm (libwhich)[arguments]: Fix non-cross compilation.
* gnu: Fix build for python-pysam.Roel Janssen2020-11-13
| | | | | * gnu/packages/bioinformatics.scm (python-pysam): Use htslib-1.9, samtools-1.9, and bcftools-1.9.
* gnu: Add bcftools-1.9.Roel Janssen2020-11-13
| | | | * gnu/packages/bioinformatics.scm (bcftools-1.9): New variable.
* gnu: dino: Update to 0.2.0Ekaitz Zarraga2020-11-13
| | | | | | | | | | | | | | | Update of the recently released Dino 0.2.0 version. Thanks! From 0b764d48996f3851ee2596a25f1fd42a8d3f4063 Mon Sep 17 00:00:00 2001 From: Ekaitz Zarraga <ekaitz@elenq.tech> Date: Fri, 13 Nov 2020 12:18:11 +0100 Subject: [PATCH] gnu: dino: Update to 0.2.0 * gnu/packages/messaging.scm (dino): Update to 0.2.0 Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* gnu: libwhich: Cross-compile.Tobias Geerinckx-Rice2020-11-13
| | | | | * gnu/packages/julia.scm (libwhich)[arguments]: Use CC-FOR-TARGET. Look for zlib in NATIVE-INPUTS.
* gnu: bedtools: Use samtools-1.9.Roel Janssen2020-11-13
| | | | | | | | The build for bedtools with samtools 1.11 triggers a testsuite failure which is reported here: https://github.com/arq5x/bedtools2/issues/814 * gnu/packages/bioinformatics.scm (bedtools): Use samtools-1.9.
* gnu: Add samtools-1.9.Roel Janssen2020-11-13
| | | | * gnu/packages/bioinformatics.scm (samtools-1.9): New variable.
* gnu: Add htslib-1.9.Roel Janssen2020-11-13
| | | | * gnu/packages/bioinformatics.scm (htslib-1.9): New variable.
* gnu: vim: Update to 8.2.1980.Tobias Geerinckx-Rice2020-11-13
| | | | * gnu/packages/vim.scm (vim): Update to 8.2.1980.
* gnu: criu: Support nftables.Tobias Geerinckx-Rice2020-11-13
| | | | * gnu/packages/virtualization.scm (criu)[inputs]: Add nftables.
* gnu: criu: Update to 3.15.Tobias Geerinckx-Rice2020-11-13
| | | | * gnu/packages/virtualization.scm (criu): Update to 3.15.
* gnu: youtube-dl: Update to 2020.11.12.Tobias Geerinckx-Rice2020-11-13
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2020.11.12.
* gnu: knot: Update to 3.0.2.Tobias Geerinckx-Rice2020-11-13
| | | | * gnu/packages/dns.scm (knot): Update to 3.0.2.
* gnu: muchsync: Update to 6.Tobias Geerinckx-Rice2020-11-13
| | | | * gnu/packages/mail.scm (muchsync): Update to 6.
* gnu: gpxsee: Update to 7.36.Tobias Geerinckx-Rice2020-11-13
| | | | * gnu/packages/gps.scm (gpxsee): Update to 7.36.
* gnu: alot: Update to 0.9.1.Tanguy Le Carrour2020-11-12
| | | | | | | | | | | | | | | * gnu/packages/mail.scm (alot): Update to 0.9.1. [arguments]: Fix some tests and disable some others. [native-inputs]: Add procps. [inputs]: Remove python2-magic, python2-configobj, python2-twisted, python2-urwid, python2-urwidtrees, python2-pygpgme and python2-notmuch. Add gnupg, python-magic, python-configobj, python-twisted, python-service-identity, python-urwid, python-urwidtrees, python-gpg and python-notmuch. [synopsis]: Update synopsis. [description]: Update description. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: afew: Update to 3.0.1.Tanguy Le Carrour2020-11-12
| | | | | | | | * gnu/packages/mail.scm (afew): Update to 3.0.1. [inputs]: Add notmuch and python-dkimpy. [native-inputs]: Add python-freezegun. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: ungoogled-chromium: Update to 86.0.4240.198-0.b68e17f [security fixes].Marius Bakke2020-11-12
| | | | | | | This fixes CVE-2020-16013 and CVE-2020-16017. * gnu/packages/chromium.scm (%chromium-version): Set to 86.0.4240.198. (ungoogled-chromium): Update hash.
* gnu: tor: Update to 0.4.4.6 [fixes TROVE-2020-005].Tobias Geerinckx-Rice2020-11-12
| | | | * gnu/packages/tor.scm (tor): Update to 0.4.4.6.
* gnu: emacs-lispy: Update to 20201109.Pierre Neidhardt2020-11-12
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 20201109. [native-inputs]: Add which. [arguments]: Fix test command to not use straight.el and disable failing test related to Clojure.
* Merge branch 'version-1.2.0'Ludovic Courtès2020-11-12
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