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* gnu: josm: Fix formatting and install more files.josm-improvementsChristopher Baines2020-09-13
| | | | | | | This means that JOSM appears in the GNOME Shell menu. * gnu/packages/geo.scm (josm)[source]: Replace tab character. [arguments]: Reduce line length, and add install-share-directories phase.
* gnu: editorconfig-vim: Update to 1.1.1.Efraim Flashner2020-09-12
| | | | | | | * gnu/packages/vim.scm (editorconfig-vim): Update to 1.1.1. [source]: Remove snippet. [arguments]: Remove custom 'patch-editorconfig-path phase. [inputs]: Remove editorconfig-core-c.
* gnu: muse-sequencer: Enable more features.Ricardo Wurmus2020-09-12
| | | | | | | * gnu/packages/music.scm (muse-sequencer)[arguments]: Add phase "fix-include" to patch header file reference; remove obsolete ENABLE_LV2_SUPPLIED configuration option; remove ENABLE_RTAUDIO=OFF. [inputs]: Add lrdf, pulseaudio, rtaudio, and rubberband.
* gnu: muse-sequencer: Update to 3.1.1.Ricardo Wurmus2020-09-12
| | | | | | * gnu/packages/music.scm (muse-sequencer): Update to 3.1.1. [arguments]: Set CMAKE_EXE_LINKER_FLAGS and CMAKE_SHARED_LINKER_FLAGS; end "chdir" phase with #T.
* gnu: emacs-pdf-tools: Update to 0.90-1.Nicolas Goaziou2020-09-12
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90-1. Fix indentation. Update to an unreleased commit to fix an incompatibility with Emacs 27+.
* Revert "gnu: linux-libre: Update to 5.8.8."Oleg Pykhalov2020-09-12
| | | | | This reverts commit ad42c20921235532e80e776fd55090127389208b, which breaks "guix system build" as described in <https://issues.guix.info/issue/43352>.
* ui: Lexicographically sort transaction entries based on their package name.Maxim Cournoyer2020-09-12
| | | | | * guix/ui.scm (show-manifest-transaction): Sort entries to be displayed in a tabulated view.
* ui: Refactor the package-strings helper in show-manifest-transaction.Maxim Cournoyer2020-09-12
| | | | | | | * guix/ui.scm (show-manifest-transaction)[package-strings]: Add an OLD-VERSIONS keyword parameter. Absorb the code path previously found in the upgrade-string. Remove upgrade-string. (show-manifest-transaction): Adjust to the above changes.
* doc: Document the use of snippets vs phases.Maxim Cournoyer2020-09-12
| | | | * doc/contributing.texi (Snippets versus phases): New section.
* gnu: python-aiodns: Propagate python-pycares.Danny Milosavljevic2020-09-12
| | | | | * gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares... [propagated-inputs]: ...to here.
* gnu: Add poezio.Raghav Gururajan2020-09-12
| | | | * gnu/packages/messaging.scm (poezio): New variable.
* gnu: Add python-potr.Raghav Gururajan2020-09-12
| | | | * gnu/packages/python-crypto.scm (python-potr): New variable.
* gnu: Add python-slixmpp.Raghav Gururajan2020-09-12
| | | | * gnu/packages/python-xyz.scm (python-slixmpp): New variable.
* gnu: ebusd: Enable MQTT support.Danny Milosavljevic2020-09-12
| | | | * gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto.
* gnu: Add mosquitto.Danny Milosavljevic2020-09-12
| | | | * gnu/packages/messaging.scm (mosquitto): New variable.
* gnu: lldpd: Update to 1.0.6.Tobias Geerinckx-Rice2020-09-11
| | | | * gnu/packages/networking.scm (lldpd): Update to 1.0.6.
* gnu: enet: Update to 1.3.16.Tobias Geerinckx-Rice2020-09-11
| | | | * gnu/packages/networking.scm (enet): Update to 1.3.16.
* gnu: batctl: Update to 2020.3.Tobias Geerinckx-Rice2020-09-11
| | | | * gnu/packages/networking.scm (batctl): Update to 2020.3.
* Revert "gnu: dovecot: Set moduledir to global directory."Tobias Geerinckx-Rice2020-09-11
| | | | | This reverts commit db0109be42547d5dbb0fc1eb8ae30ccc968ed88b. Same reason as commit d9d88c2ff0d367599d0a851ccf9377c4e21079d6.
* Revert "services: dovecot: Use modules via symlink to system profile."Tobias Geerinckx-Rice2020-09-11
| | | | | | | | | This reverts commit bcfe0f0c1e9a2b91049d7c6c591c7f0c6a002c14 for now. It breaks most current use(r)s of the Dovecot service and needs to be combined with an extra modules configuration field of some kind. See <https://issues.guix.gnu.org/43347>.
* gnu: padthv1: Update to 0.9.17.Tobias Geerinckx-Rice2020-09-11
| | | | | * gnu/packages/music.scm (padthv1): Update to 0.9.17. [inputs]: Replace fftw with fftwf.
* gnu: libetpan: Update to 1.9.4.Tobias Geerinckx-Rice2020-09-11
| | | | * gnu/packages/mail.scm (libetpan): Update to 1.9.4.
* gnu: bsequencer: Update to 1.6.0.Ricardo Wurmus2020-09-11
| | | | * gnu/packages/music.scm (bsequencer): Update to 1.6.0.
* gnu: r-adaptivesparsity: End build phase on #T.Ricardo Wurmus2020-09-11
| | | | | * gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase "link-against-armadillo" with Boolean.
* gnu: r-adaptivesparsity: Fix case of "Gaussian".Ricardo Wurmus2020-09-11
| | | | * gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo.
* gnu: r-qtl: Use CRAN-URI.Ricardo Wurmus2020-09-11
| | | | | * gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit mirror URL.
* gnu: r-qtl: Correct indentation.Ricardo Wurmus2020-09-11
| | | | | * gnu/packages/cran.scm (r-qtl): Reindent. [description]: Reflow paragraphs.
* gnu: r-absfiltergsea: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here... * gnu/packages/cran.scm (r-absfiltergsea): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-diversitree: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-diversitree): Move from here... * gnu/packages/cran.scm (r-diversitree): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-phangorn: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-phangorn): Move from here... * gnu/packages/cran.scm (r-phangorn): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-seurat: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-seurat): Move from here... * gnu/packages/cran.scm (r-seurat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-maldiquant: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-maldiquant): Move from here... * gnu/packages/cran.scm (r-maldiquant): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-seqminer: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-seqminer): Move from here... * gnu/packages/cran.scm (r-seqminer): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-qtl2: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-qtl2): Move from here... * gnu/packages/cran.scm (r-qtl2): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-qtl: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/bioinformatics.scm (r-qtl): Move from here... * gnu/packages/cran.scm (r-qtl): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-igraph: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/graph.scm (r-igraph): Move from here... * gnu/packages/cran.scm (r-igraph): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-diffusionmap: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/graph.scm (r-diffusionmap): Move from here... * gnu/packages/cran.scm (r-diffusionmap): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-adaptivesparsity: Move to (gnu packages cran).zimoun2020-09-11
| | | | | | | * gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here... * gnu/packages/cran.scm (r-adaptivesparsity): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-codedepends: Comment why it is in bioconductor.scm.zimoun2020-09-11
| | | | * gnu/packages/bioconductor.scm (r-codedepends): Add comment.
* gnu: Add r-fhtest.Peter Lo2020-09-11
| | | | | | * gnu/packages/bioconductor.scm (r-fhtest): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-interval.Peter Lo2020-09-11
| | | | | | * gnu/packages/bioconductor.scm (r-interval): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-perm.Peter Lo2020-09-11
| | | | | | * gnu/packages/cran.scm (r-perm): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-mlecens.Peter Lo2020-09-11
| | | | | | * gnu/packages/cran.scm (r-mlecens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-icens.Peter Lo2020-09-11
| | | | | | * gnu/packages/bioconductor.scm (r-icens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-tidymodels: Update to 0.1.1.Ricardo Wurmus2020-09-11
| | | | | | | * gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1. [propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and r-tidytext; add r-modeldata and r-tidyr. [native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc.
* gnu: r-infer: Update to 0.5.3.Ricardo Wurmus2020-09-11
| | | | * gnu/packages/cran.scm (r-infer): Update to 0.5.3.
* gnu: Add r-modeldata.Ricardo Wurmus2020-09-11
| | | | * gnu/packages/cran.scm (r-modeldata): New variable.
* gnu: r-parsnip: Update to 0.1.3.Ricardo Wurmus2020-09-11
| | | | * gnu/packages/cran.scm (r-parsnip): Update to 0.1.3.
* gnu: r-tidytext: Update to 0.2.5.Ricardo Wurmus2020-09-11
| | | | | * gnu/packages/cran.scm (r-tidytext): Update to 0.2.5. [propagated-inputs]: Remove r-stopwords; add r-tibble.
* gnu: r-tidypredict: Update to 0.4.6.Ricardo Wurmus2020-09-11
| | | | * gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6.
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