diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 08eb33e4e0..9e463457f2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3036,6 +3036,47 @@ two-colour microarray experiments and for the statistical analysis of factorial microarray data.") (license license:gpl2+))) +(define-public r-damefinder + (package + (name "r-damefinder") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DAMEfinder" version)) + (sha256 + (base32 + "123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf")))) + (properties `((upstream-name . "DAMEfinder"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biostrings + r-bumphunter + r-cowplot + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-ggplot2 + r-iranges + r-limma + r-plyr + r-readr + r-reshape2 + r-rsamtools + r-s4vectors + r-stringr + r-summarizedexperiment + r-variantannotation)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/DAMEfinder") + (synopsis "Differential allelicly methylated regions") + (description + "This package offers functionality for taking methtuple or Bismark +outputs to calculate @acronym{ASM, Allele-Specific Methylation} scores and +compute @acronym{DAMEs, Differential Allelicly MEthylated} regions. It also +offers nice visualization of methyl-circle plots.") + (license license:expat))) + (define-public r-dearseq (package (name "r-dearseq") |