diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
2 files changed, 32 insertions, 32 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6a58391765..936f521245 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -232,6 +232,38 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default." ) (license license:artistic2.0))) +(define-public r-bsgenome-mmusculus-ucsc-mm10 + (package + (name "r-bsgenome-mmusculus-ucsc-mm10") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Mmusculus.UCSC.mm10_" + version ".tar.gz")) + (sha256 + (base32 + "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf")))) + (properties + `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/") + (synopsis "Full genome sequences for Mouse") + (description + "This package provides full genome sequences for Mus +musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored +in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-org-dr-eg-db (package (name "r-org-dr-eg-db") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 51bb3bb9b7..ef65dd9361 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8105,38 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).") (license license:lgpl2.0+))) -(define-public r-bsgenome-mmusculus-ucsc-mm10 - (package - (name "r-bsgenome-mmusculus-ucsc-mm10") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Mmusculus.UCSC.mm10_" - version ".tar.gz")) - (sha256 - (base32 - "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf")))) - (properties - `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/") - (synopsis "Full genome sequences for Mouse") - (description - "This package provides full genome sequences for Mus -musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored -in Biostrings objects.") - (license license:artistic2.0))) - (define-public r-txdb-mmusculus-ucsc-mm10-knowngene (package (name "r-txdb-mmusculus-ucsc-mm10-knowngene") |