diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6590f6eb5b..2bc453dcaa 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7204,3 +7204,46 @@ Bioconductor user experience by extending concepts from classes for individual assays, and allowing subsetting by genomic ranges or rownames.") (license license:artistic2.0))) + +(define-public r-bioconcotk + (package + (name "r-bioconcotk") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BiocOncoTK" version)) + (sha256 + (base32 + "0rnah6c01a33yb9663jim9iclan61rpcwprb56mykgn1pf5hywbj")))) + (properties `((upstream-name . "BiocOncoTK"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bigrquery" ,r-bigrquery) + ("r-car" ,r-car) + ("r-complexheatmap" ,r-complexheatmap) + ("r-curatedtcgadata" ,r-curatedtcgadata) + ("r-dbi" ,r-dbi) + ("r-dplyr" ,r-dplyr) + ("r-dt" ,r-dt) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-ggpubr" ,r-ggpubr) + ("r-graph" ,r-graph) + ("r-httr" ,r-httr) + ("r-iranges" ,r-iranges) + ("r-magrittr" ,r-magrittr) + ("r-plyr" ,r-plyr) + ("r-rgraphviz" ,r-rgraphviz) + ("r-rjson" ,r-rjson) + ("r-s4vectors" ,r-s4vectors) + ("r-scales" ,r-scales) + ("r-shiny" ,r-shiny) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://bioconductor.org/packages/BiocOncoTK") + (synopsis "Bioconductor components for general cancer genomics") + (description + "The purpose of this package is to provide a central interface to various +tools for genome-scale analysis of cancer studies.") + (license license:artistic2.0))) |