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-rw-r--r--gnu/ci.scm125
-rw-r--r--gnu/installer.scm21
-rw-r--r--gnu/installer/final.scm98
-rw-r--r--gnu/installer/newt/final.scm40
-rw-r--r--gnu/installer/newt/network.scm10
-rw-r--r--gnu/installer/newt/page.scm587
-rw-r--r--gnu/installer/newt/partition.scm8
-rw-r--r--gnu/installer/newt/user.scm64
-rw-r--r--gnu/installer/newt/welcome.scm44
-rw-r--r--gnu/installer/steps.scm25
-rw-r--r--gnu/installer/tests.scm340
-rw-r--r--gnu/installer/utils.scm158
-rw-r--r--gnu/local.mk8
-rw-r--r--gnu/packages/audio.scm2
-rw-r--r--gnu/packages/check.scm6
-rw-r--r--gnu/packages/chemistry.scm5
-rw-r--r--gnu/packages/compression.scm6
-rw-r--r--gnu/packages/coq.scm3
-rw-r--r--gnu/packages/cpp.scm45
-rw-r--r--gnu/packages/cran.scm29
-rw-r--r--gnu/packages/databases.scm4
-rw-r--r--gnu/packages/disk.scm6
-rw-r--r--gnu/packages/django.scm2
-rw-r--r--gnu/packages/emacs-xyz.scm82
-rw-r--r--gnu/packages/enchant.scm4
-rw-r--r--gnu/packages/fontutils.scm38
-rw-r--r--gnu/packages/games.scm4
-rw-r--r--gnu/packages/gcc.scm6
-rw-r--r--gnu/packages/glib.scm7
-rw-r--r--gnu/packages/gnome.scm8
-rw-r--r--gnu/packages/gps.scm96
-rw-r--r--gnu/packages/graph.scm2
-rw-r--r--gnu/packages/graphviz.scm2
-rw-r--r--gnu/packages/gtk.scm6
-rw-r--r--gnu/packages/guile-xyz.scm50
-rw-r--r--gnu/packages/ibus.scm4
-rw-r--r--gnu/packages/java.scm6
-rw-r--r--gnu/packages/kodi.scm4
-rw-r--r--gnu/packages/lisp-xyz.scm8
-rw-r--r--gnu/packages/maths.scm26
-rw-r--r--gnu/packages/patches/appstream-glib-2020.patch31
-rw-r--r--gnu/packages/patches/ceph-boost-compat.patch81
-rw-r--r--gnu/packages/patches/ceph-volume-respect-PATH.patch22
-rw-r--r--gnu/packages/patches/libgit2-avoid-python.patch322
-rw-r--r--gnu/packages/patches/suitesparse-mongoose-cmake.patch27
-rw-r--r--gnu/packages/patchutils.scm6
-rw-r--r--gnu/packages/pdf.scm22
-rw-r--r--gnu/packages/python-web.scm22
-rw-r--r--gnu/packages/python-xyz.scm158
-rw-r--r--gnu/packages/regex.scm4
-rw-r--r--gnu/packages/scsi.scm6
-rw-r--r--gnu/packages/statistics.scm12
-rw-r--r--gnu/packages/storage.scm8
-rw-r--r--gnu/packages/version-control.scm44
-rw-r--r--gnu/packages/webkit.scm4
-rw-r--r--gnu/packages/wm.scm4
-rw-r--r--gnu/tests.scm8
-rw-r--r--gnu/tests/base.scm23
-rw-r--r--gnu/tests/install.scm204
59 files changed, 1980 insertions, 1017 deletions
diff --git a/gnu/ci.scm b/gnu/ci.scm
index 89f499e25f..e024c09ebc 100644
--- a/gnu/ci.scm
+++ b/gnu/ci.scm
@@ -28,6 +28,7 @@
#:use-module (guix derivations)
#:use-module (guix build-system)
#:use-module (guix monads)
+ #:use-module (guix gexp)
#:use-module (guix ui)
#:use-module ((guix licenses)
#:select (gpl3+ license? license-name))
@@ -54,7 +55,7 @@
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-26)
#:use-module (ice-9 match)
- #:export (channel-instance->package
+ #:export (channel-source->package
hydra-jobs))
;;; Commentary:
@@ -135,6 +136,49 @@ SYSTEM."
"i686-w64-mingw32"
"x86_64-w64-mingw32"))
+(define (cross-jobs store system)
+ "Return a list of cross-compilation jobs for SYSTEM."
+ (define (from-32-to-64? target)
+ ;; Return true if SYSTEM is 32-bit and TARGET is 64-bit. This hack
+ ;; prevents known-to-fail cross-builds from i686-linux or armhf-linux to
+ ;; mips64el-linux-gnuabi64.
+ (and (or (string-prefix? "i686-" system)
+ (string-prefix? "i586-" system)
+ (string-prefix? "armhf-" system))
+ (string-contains target "64"))) ;x86_64, mips64el, aarch64, etc.
+
+ (define (same? target)
+ ;; Return true if SYSTEM and TARGET are the same thing. This is so we
+ ;; don't try to cross-compile to 'mips64el-linux-gnu' from
+ ;; 'mips64el-linux'.
+ (or (string-contains target system)
+ (and (string-prefix? "armhf" system) ;armhf-linux
+ (string-prefix? "arm" target)))) ;arm-linux-gnueabihf
+
+ (define (pointless? target)
+ ;; Return #t if it makes no sense to cross-build to TARGET from SYSTEM.
+ (match system
+ ((or "x86_64-linux" "i686-linux")
+ (if (string-contains target "mingw")
+ (not (string=? "x86_64-linux" system))
+ #f))
+ (_
+ ;; Don't try to cross-compile from non-Intel platforms: this isn't
+ ;; very useful and these are often brittle configurations.
+ #t)))
+
+ (define (either proc1 proc2 proc3)
+ (lambda (x)
+ (or (proc1 x) (proc2 x) (proc3 x))))
+
+ (append-map (lambda (target)
+ (map (lambda (package)
+ (package-cross-job store (job-name package)
+ package target system))
+ %packages-to-cross-build))
+ (remove (either from-32-to-64? same? pointless?)
+ %cross-targets)))
+
(define %guixsd-supported-systems
'("x86_64-linux" "i686-linux" "armhf-linux"))
@@ -196,29 +240,39 @@ system.")
(define channel-build-system
;; Build system used to "convert" a channel instance to a package.
(let* ((build (lambda* (store name inputs
- #:key instance system
+ #:key source commit system
#:allow-other-keys)
(run-with-store store
- (channel-instances->derivation (list instance))
+ ;; SOURCE can be a lowerable object such as <local-file>
+ ;; or a file name. Adjust accordingly.
+ (mlet* %store-monad ((source (if (string? source)
+ (return source)
+ (lower-object source)))
+ (instance
+ -> (checkout->channel-instance
+ source #:commit commit)))
+ (channel-instances->derivation (list instance)))
#:system system)))
- (lower (lambda* (name #:key system instance #:allow-other-keys)
+ (lower (lambda* (name #:key system source commit
+ #:allow-other-keys)
(bag
(name name)
(system system)
(build build)
- (arguments `(#:instance ,instance))))))
+ (arguments `(#:source ,source
+ #:commit ,commit))))))
(build-system (name 'channel)
(description "Turn a channel instance into a package.")
(lower lower))))
-(define (channel-instance->package instance)
- "Return a package for the given channel INSTANCE."
+(define* (channel-source->package source #:key commit)
+ "Return a package for the given channel SOURCE, a lowerable object."
(package
(inherit guix)
- (version (or (string-take (channel-instance-commit instance) 7)
- (string-append (package-version guix) "+")))
+ (version (string-append (package-version guix) "+"))
(build-system channel-build-system)
- (arguments `(#:instance ,instance))
+ (arguments `(#:source ,source
+ #:commit ,commit))
(inputs '())
(native-inputs '())
(propagated-inputs '())))
@@ -226,9 +280,6 @@ system.")
(define* (system-test-jobs store system
#:key source commit)
"Return a list of jobs for the system tests."
- (define instance
- (checkout->channel-instance source #:commit commit))
-
(define (test->thunk test)
(lambda ()
(define drv
@@ -265,7 +316,7 @@ system.")
;; expensive. It also makes sure we get a valid Guix package when this
;; code is not running from a checkout.
(parameterize ((current-guix-package
- (channel-instance->package instance)))
+ (channel-source->package source #:commit commit)))
(map ->job (all-system-tests)))
'()))
@@ -417,48 +468,6 @@ Return #f if no such checkout is found."
(define source
(assq-ref checkout 'file-name))
- (define (cross-jobs system)
- (define (from-32-to-64? target)
- ;; Return true if SYSTEM is 32-bit and TARGET is 64-bit. This hack
- ;; prevents known-to-fail cross-builds from i686-linux or armhf-linux to
- ;; mips64el-linux-gnuabi64.
- (and (or (string-prefix? "i686-" system)
- (string-prefix? "i586-" system)
- (string-prefix? "armhf-" system))
- (string-contains target "64"))) ;x86_64, mips64el, aarch64, etc.
-
- (define (same? target)
- ;; Return true if SYSTEM and TARGET are the same thing. This is so we
- ;; don't try to cross-compile to 'mips64el-linux-gnu' from
- ;; 'mips64el-linux'.
- (or (string-contains target system)
- (and (string-prefix? "armhf" system) ;armhf-linux
- (string-prefix? "arm" target)))) ;arm-linux-gnueabihf
-
- (define (pointless? target)
- ;; Return #t if it makes no sense to cross-build to TARGET from SYSTEM.
- (match system
- ((or "x86_64-linux" "i686-linux")
- (if (string-contains target "mingw")
- (not (string=? "x86_64-linux" system))
- #f))
- (_
- ;; Don't try to cross-compile from non-Intel platforms: this isn't
- ;; very useful and these are often brittle configurations.
- #t)))
-
- (define (either proc1 proc2 proc3)
- (lambda (x)
- (or (proc1 x) (proc2 x) (proc3 x))))
-
- (append-map (lambda (target)
- (map (lambda (package)
- (package-cross-job store (job-name package)
- package target system))
- %packages-to-cross-build))
- (remove (either from-32-to-64? same? pointless?)
- %cross-targets)))
-
;; Turn off grafts. Grafting is meant to happen on the user's machines.
(parameterize ((%graft? #f))
;; Return one job for each package, except bootstrap packages.
@@ -483,14 +492,14 @@ Return #f if no such checkout is found."
#:source source
#:commit commit)
(tarball-jobs store system)
- (cross-jobs system))))
+ (cross-jobs store system))))
((core)
;; Build core packages only.
(append (map (lambda (package)
(package-job store (job-name package)
package system))
%core-packages)
- (cross-jobs system)))
+ (cross-jobs store system)))
((hello)
;; Build hello package only.
(if (string=? system (%current-system))
diff --git a/gnu/installer.scm b/gnu/installer.scm
index edef3fde62..6c11fa6198 100644
--- a/gnu/installer.scm
+++ b/gnu/installer.scm
@@ -26,6 +26,8 @@
#:use-module (guix utils)
#:use-module (guix ui)
#:use-module ((guix self) #:select (make-config.scm))
+ #:use-module (guix packages)
+ #:use-module (guix git-download)
#:use-module (gnu installer utils)
#:use-module (gnu packages admin)
#:use-module (gnu packages base)
@@ -280,6 +282,25 @@ selected keymap."
((installer-final-page current-installer)
result prev-steps))))))))
+(define guile-newt
+ ;; Guile-Newt with 'form-watch-fd'.
+ ;; TODO: Remove once a new release is out.
+ (let ((commit "b3c885d42cfac327d3531c9d064939514ce6bf12")
+ (revision "1"))
+ (package
+ (inherit (@ (gnu packages guile-xyz) guile-newt))
+ (name "guile-newt")
+ (version (git-version "0.0.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.com/mothacehe/guile-newt")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02p0bi6c05699idgx6gfkljhqgi8zf09clhzx81i8wa064s70r1y")))))))
+
(define (installer-program)
"Return a file-like object that runs the given INSTALLER."
(define init-gettext
diff --git a/gnu/installer/final.scm b/gnu/installer/final.scm
index 8c2185e36f..3c170e5d0f 100644
--- a/gnu/installer/final.scm
+++ b/gnu/installer/final.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018, 2020 Mathieu Othacehe <m.othacehe@gmail.com>
-;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019, 2020 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -28,6 +28,12 @@
#:use-module (gnu build accounts)
#:use-module ((gnu system shadow) #:prefix sys:)
#:use-module (rnrs io ports)
+ #:use-module (srfi srfi-1)
+ #:use-module (ice-9 ftw)
+ #:use-module (ice-9 popen)
+ #:use-module (ice-9 match)
+ #:use-module (ice-9 format)
+ #:use-module (ice-9 rdelim)
#:export (install-system))
(define %seed
@@ -97,24 +103,92 @@ USERS."
(write-passwd password (string-append etc "/passwd"))
(write-shadow shadow (string-append etc "/shadow")))
+(define* (kill-cow-users cow-path #:key (spare '("udevd")))
+ "Kill all processes that have references to the given COW-PATH in their
+'maps' file. The process whose names are in SPARE list are spared."
+ (define %not-nul
+ (char-set-complement (char-set #\nul)))
+
+ (let ((pids
+ (filter-map (lambda (pid)
+ (call-with-input-file
+ (string-append "/proc/" pid "/maps")
+ (lambda (port)
+ (and (string-contains (get-string-all port)
+ cow-path)
+ (string->number pid)))))
+ (scandir "/proc" string->number))))
+ (for-each (lambda (pid)
+ ;; cmdline does not always exist.
+ (false-if-exception
+ (call-with-input-file
+ (string-append "/proc/" (number->string pid) "/cmdline")
+ (lambda (port)
+ (match (string-tokenize (read-string port) %not-nul)
+ ((argv0 _ ...)
+ (unless (member (pk (basename argv0)) spare)
+ (syslog "Killing process ~a~%" pid)
+ (kill pid SIGKILL)))
+ (_ #f))))))
+ pids)))
+
(define (umount-cow-store)
"Remove the store overlay and the bind-mount on /tmp created by the
-cow-store service."
- (let ((tmp-dir "/remove"))
- (mkdir-p tmp-dir)
- (mount (%store-directory) tmp-dir "" MS_MOVE)
- (umount tmp-dir)
- (umount "/tmp")))
+cow-store service. This procedure is very fragile and a better approach would
+be much appreciated."
+
+ ;; Remove when integrated in (gnu services herd).
+ (define (restart-service name)
+ (with-shepherd-action name ('restart) result
+ result))
+
+ (catch #t
+ (lambda ()
+ (let ((tmp-dir "/remove"))
+ (mkdir-p tmp-dir)
+ (mount (%store-directory) tmp-dir "" MS_MOVE)
+
+ ;; The guix-daemon has possibly opened files from the cow-store,
+ ;; restart it.
+ (restart-service 'guix-daemon)
+
+ ;; Kill all processes started while the cow-store was active (logins
+ ;; on other TTYs for instance).
+ (kill-cow-users tmp-dir)
+
+ ;; Try to umount the store overlay. Some process such as udevd
+ ;; workers might still be active, so do some retries.
+ (let loop ((try 5))
+ (sleep 1)
+ (let ((umounted? (false-if-exception (umount tmp-dir))))
+ (if (and (not umounted?) (> try 0))
+ (loop (- try 1))
+ (if umounted?
+ (syslog "Umounted ~a successfully.~%" tmp-dir)
+ (syslog "Failed to umount ~a.~%" tmp-dir)))))
+
+ (umount "/tmp")))
+ (lambda args
+ (syslog "~a~%" args))))
(define* (install-system locale #:key (users '()))
"Create /etc/shadow and /etc/passwd on the installation target for USERS.
Start COW-STORE service on target directory and launch guix install command in
a subshell. LOCALE must be the locale name under which that command will run,
or #f. Return #t on success and #f on failure."
- (let ((install-command
- (format #f "guix system init --fallback ~a ~a"
- (%installer-configuration-file)
- (%installer-target-dir))))
+ (let* ((options (catch 'system-error
+ (lambda ()
+ ;; If this file exists, it can provide
+ ;; additional command-line options.
+ (call-with-input-file
+ "/tmp/installer-system-init-options"
+ read))
+ (const '())))
+ (install-command (append (list "guix" "system" "init"
+ "--fallback")
+ options
+ (list (%installer-configuration-file)
+ (%installer-target-dir)))))
(mkdir-p (%installer-target-dir))
;; We want to initialize user passwords but we don't want to store them in
@@ -128,7 +202,7 @@ or #f. Return #t on success and #f on failure."
(lambda ()
(start-service 'cow-store (list (%installer-target-dir))))
(lambda ()
- (run-shell-command install-command #:locale locale))
+ (run-command install-command #:locale locale))
(lambda ()
(stop-service 'cow-store)
;; Remove the store overlay created at cow-store service start.
diff --git a/gnu/installer/newt/final.scm b/gnu/installer/newt/final.scm
index 405eee2540..5cb4f6816d 100644
--- a/gnu/installer/newt/final.scm
+++ b/gnu/installer/newt/final.scm
@@ -63,28 +63,38 @@ This will take a few minutes.")
(&installer-step-abort)))))))
(define (run-install-success-page)
- (message-window
- (G_ "Installation complete")
- (G_ "Reboot")
- (G_ "Congratulations! Installation is now complete. \
+ (match (current-clients)
+ (()
+ (message-window
+ (G_ "Installation complete")
+ (G_ "Reboot")
+ (G_ "Congratulations! Installation is now complete. \
You may remove the device containing the installation image and \
-press the button to reboot."))
+press the button to reboot.")))
+ (_
+ ;; When there are clients connected, send them a message and keep going.
+ (send-to-clients '(installation-complete))))
;; Return success so that the installer happily reboots.
'success)
(define (run-install-failed-page)
- (match (choice-window
- (G_ "Installation failed")
- (G_ "Resume")
- (G_ "Restart the installer")
- (G_ "The final system installation step failed. You can resume from \
+ (match (current-clients)
+ (()
+ (match (choice-window
+ (G_ "Installation failed")
+ (G_ "Resume")
+ (G_ "Restart the installer")
+ (G_ "The final system installation step failed. You can resume from \
a specific step, or restart the installer."))
- (1 (raise
- (condition
- (&installer-step-abort))))
- (2
- ;; Keep going, the installer will be restarted later on.
+ (1 (raise
+ (condition
+ (&installer-step-abort))))
+ (2
+ ;; Keep going, the installer will be restarted later on.
+ #t)))
+ (_
+ (send-to-clients '(installation-failure))
#t)))
(define* (run-install-shell locale
diff --git a/gnu/installer/newt/network.scm b/gnu/installer/newt/network.scm
index 40d85817b6..461d5d99c0 100644
--- a/gnu/installer/newt/network.scm
+++ b/gnu/installer/newt/network.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com>
-;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019, 2020 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -119,6 +119,10 @@ network devices were found. Do you want to continue anyway?"))
(define (wait-service-online)
"Display a newt scale until connman detects an Internet access. Do
FULL-VALUE tentatives, spaced by 1 second."
+ (define (online?)
+ (or (connman-online?)
+ (file-exists? "/tmp/installer-assume-online")))
+
(let* ((full-value 5))
(run-scale-page
#:title (G_ "Checking connectivity")
@@ -127,10 +131,10 @@ FULL-VALUE tentatives, spaced by 1 second."
#:scale-update-proc
(lambda (value)
(sleep 1)
- (if (connman-online?)
+ (if (online?)
full-value
(+ value 1))))
- (unless (connman-online?)
+ (unless (online?)
(run-error-page
(G_ "The selected network does not provide access to the \
Internet, please try again.")
diff --git a/gnu/installer/newt/page.scm b/gnu/installer/newt/page.scm
index 8aea5a1109..9031c7d4ba 100644
--- a/gnu/installer/newt/page.scm
+++ b/gnu/installer/newt/page.scm
@@ -19,6 +19,7 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu installer newt page)
+ #:use-module (gnu installer steps)
#:use-module (gnu installer utils)
#:use-module (gnu installer newt utils)
#:use-module (guix i18n)
@@ -26,7 +27,10 @@
#:use-module (ice-9 match)
#:use-module (ice-9 receive)
#:use-module (srfi srfi-1)
+ #:use-module (srfi srfi-11)
#:use-module (srfi srfi-26)
+ #:use-module (srfi srfi-34)
+ #:use-module (srfi srfi-35)
#:use-module (newt)
#:export (draw-info-page
draw-connecting-page
@@ -36,7 +40,9 @@
run-listbox-selection-page
run-scale-page
run-checkbox-tree-page
- run-file-textbox-page))
+ run-file-textbox-page
+
+ run-form-with-clients))
;;; Commentary:
;;;
@@ -49,9 +55,123 @@
;;;
;;; Code:
+(define* (watch-clients! form #:optional (clients (current-clients)))
+ "Have FORM watch the file descriptors corresponding to current client
+connections. Consequently, FORM may exit with the 'exit-fd-ready' reason."
+ (when (current-server-socket)
+ (form-watch-fd form (fileno (current-server-socket))
+ FD-READ))
+
+ (for-each (lambda (client)
+ (form-watch-fd form (fileno client)
+ (logior FD-READ FD-EXCEPT)))
+ clients))
+
+(define close-port-and-reuse-fd
+ (let ((bit-bucket #f))
+ (lambda (port)
+ "Close PORT and redirect its underlying FD to point to a valid open file
+descriptor."
+ (let ((fd (fileno port)))
+ (unless bit-bucket
+ (set! bit-bucket (car (pipe))))
+ (close-port port)
+
+ ;; FIXME: We're leaking FD.
+ (dup2 (fileno bit-bucket) fd)))))
+
+(define* (run-form-with-clients form exp)
+ "Run FORM such as it watches the file descriptors beneath CLIENTS after
+sending EXP to all the clients.
+
+Automatically restart the form when it exits with 'exit-fd-ready but without
+an actual client reply--e.g., it got a connection request or a client
+disconnect.
+
+Like 'run-form', return two values: the exit reason, and an \"argument\"."
+ (define* (discard-client! port #:optional errno)
+ (if errno
+ (syslog "removing client ~d due to ~s~%"
+ (fileno port) (strerror errno))
+ (syslog "removing client ~d due to EOF~%"
+ (fileno port)))
+
+ ;; XXX: Watch out! There's no 'form-unwatch-fd' procedure in Newt so we
+ ;; cheat: we keep PORT's file descriptor open, but make it a duplicate of
+ ;; a valid but inactive FD. Failing to do that, 'run-form' would
+ ;; select(2) on the now-closed port and keep spinning as select(2) returns
+ ;; EBADF.
+ (close-port-and-reuse-fd port)
+
+ (current-clients (delq port (current-clients)))
+ (close-port port))
+
+ (define title
+ ;; Title of FORM.
+ (match exp
+ (((? symbol? tag) alist ...)
+ (match (assq 'title alist)
+ ((_ title) title)
+ (_ tag)))
+ (((? symbol? tag) _ ...)
+ tag)
+ (_
+ 'unknown)))
+
+ ;; Send EXP to all the currently-connected clients.
+ (send-to-clients exp)
+
+ (let loop ()
+ (syslog "running form ~s (~s) with ~d clients~%"
+ form title (length (current-clients)))
+
+ ;; Call 'watch-clients!' within the loop because there might be new
+ ;; clients.
+ (watch-clients! form)
+
+ (let-values (((reason argument) (run-form form)))
+ (match reason
+ ('exit-fd-ready
+ (match (fdes->ports argument)
+ ((port _ ...)
+ (if (memq port (current-clients))
+
+ ;; Read a reply from a client or handle its departure.
+ (catch 'system-error
+ (lambda ()
+ (match (read port)
+ ((? eof-object? eof)
+ (discard-client! port)
+ (loop))
+ (obj
+ (syslog "form ~s (~s): client ~d replied ~s~%"
+ form title (fileno port) obj)
+ (values 'exit-fd-ready obj))))
+ (lambda args
+ (discard-client! port (system-error-errno args))
+ (loop)))
+
+ ;; Accept a new client and send it EXP.
+ (match (accept port)
+ ((client . _)
+ (syslog "accepting new client ~d while on form ~s~%"
+ (fileno client) form)
+ (catch 'system-error
+ (lambda ()
+ (write exp client)
+ (newline client)
+ (force-output client)
+ (current-clients (cons client (current-clients))))
+ (lambda _
+ (close-port client)))
+ (loop)))))))
+ (_
+ (values reason argument))))))
+
(define (draw-info-page text title)
"Draw an informative page with the given TEXT as content. Set the title of
this page to TITLE."
+ (send-to-clients `(info (title ,title) (text ,text)))
(let* ((text-box
(make-reflowed-textbox -1 -1 text 40
#:flags FLAG-BORDER))
@@ -126,20 +246,25 @@ input box, such as FLAG-PASSWORD."
(G_ "Empty input")))))
(let loop ()
(receive (exit-reason argument)
- (run-form form)
- (let ((input (entry-value input-entry)))
- (if (and (not allow-empty-input?)
- (eq? exit-reason 'exit-component)
- (string=? input ""))
- (begin
- ;; Display the error page.
- (error-page)
- ;; Set the focus back to the input input field.
- (set-current-component form input-entry)
- (loop))
- (begin
- (destroy-form-and-pop form)
- input))))))))
+ (run-form-with-clients form
+ `(input (title ,title) (text ,text)
+ (default ,default-text)))
+ (let ((input (if (eq? exit-reason 'exit-fd-ready)
+ argument
+ (entry-value input-entry))))
+ (cond ((not input) ;client disconnect or something
+ (loop))
+ ((and (not allow-empty-input?)
+ (eq? exit-reason 'exit-component)
+ (string=? input ""))
+ ;; Display the error page.
+ (error-page)
+ ;; Set the focus back to the input input field.
+ (set-current-component form input-entry)
+ (loop))
+ (else
+ (destroy-form-and-pop form)
+ input))))))))
(define (run-error-page text title)
"Run a page to inform the user of an error. The page contains the given TEXT
@@ -160,7 +285,8 @@ of the page is set to TITLE."
(newt-set-color COLORSET-ROOT "white" "red")
(add-components-to-form form text-box ok-button)
(make-wrapped-grid-window grid title)
- (run-form form)
+ (run-form-with-clients form
+ `(error (title ,title) (text ,text)))
;; Restore the background to its original color.
(newt-set-color COLORSET-ROOT "white" "blue")
(destroy-form-and-pop form)))
@@ -187,17 +313,23 @@ of the page is set to TITLE."
(make-wrapped-grid-window grid title)
(receive (exit-reason argument)
- (run-form form)
+ (run-form-with-clients form
+ `(confirmation (title ,title)
+ (text ,text)))
(dynamic-wind
(const #t)
(lambda ()
- (case exit-reason
- ((exit-component)
+ (match exit-reason
+ ('exit-component
(cond
((components=? argument ok-button)
#t)
((components=? argument exit-button)
- (exit-button-procedure))))))
+ (exit-button-procedure))))
+ ('exit-fd-ready
+ (if argument
+ #t
+ (exit-button-procedure)))))
(lambda ()
(destroy-form-and-pop form))))))
@@ -222,6 +354,8 @@ of the page is set to TITLE."
(const #t))
(listbox-callback-procedure
identity)
+ (client-callback-procedure
+ listbox-callback-procedure)
(hotkey-callback-procedure
(const #t)))
"Run a page asking the user to select an item in a listbox. The page
@@ -254,9 +388,9 @@ Each time the listbox current item changes, call SKIP-ITEM-PROCEDURE? with the
current listbox item as argument. If it returns #t, skip the element and jump
to the next/previous one depending on the previous item, otherwise do
nothing."
-
- (define (fill-listbox listbox items)
- "Append the given ITEMS to LISTBOX, once they have been converted to text
+ (let loop ()
+ (define (fill-listbox listbox items)
+ "Append the given ITEMS to LISTBOX, once they have been converted to text
with LISTBOX-ITEM->TEXT. Each item appended to the LISTBOX is given a key by
newt. Save this key by returning an association list under the form:
@@ -264,144 +398,165 @@ newt. Save this key by returning an association list under the form:
where NEWT-LISTBOX-KEY is the key returned by APPEND-ENTRY-TO-LISTBOX, when
ITEM was inserted into LISTBOX."
- (map (lambda (item)
- (let* ((text (listbox-item->text item))
- (key (append-entry-to-listbox listbox text)))
- (cons key item)))
- items))
-
- (define (sort-listbox-items listbox-items)
- "Return LISTBOX-ITEMS sorted using the 'string-locale<?' procedure on the text
+ (map (lambda (item)
+ (let* ((text (listbox-item->text item))
+ (key (append-entry-to-listbox listbox text)))
+ (cons key item)))
+ items))
+
+ (define (sort-listbox-items listbox-items)
+ "Return LISTBOX-ITEMS sorted using the 'string-locale<?' procedure on the text
corresponding to each item in the list."
- (let* ((items (map (lambda (item)
- (cons item (listbox-item->text item)))
- listbox-items))
- (sorted-items
- (sort items (lambda (a b)
- (let ((text-a (cdr a))
- (text-b (cdr b)))
- (string-locale<? text-a text-b))))))
- (map car sorted-items)))
-
- ;; Store the last selected listbox item's key.
- (define last-listbox-key (make-parameter #f))
-
- (define (previous-key keys key)
- (let ((index (list-index (cut eq? key <>) keys)))
- (and index
- (> index 0)
- (list-ref keys (- index 1)))))
-
- (define (next-key keys key)
- (let ((index (list-index (cut eq? key <>) keys)))
- (and index
- (< index (- (length keys) 1))
- (list-ref keys (+ index 1)))))
-
- (define (set-default-item listbox listbox-keys default-item)
- "Set the default item of LISTBOX to DEFAULT-ITEM. LISTBOX-KEYS is the
+ (let* ((items (map (lambda (item)
+ (cons item (listbox-item->text item)))
+ listbox-items))
+ (sorted-items
+ (sort items (lambda (a b)
+ (let ((text-a (cdr a))
+ (text-b (cdr b)))
+ (string-locale<? text-a text-b))))))
+ (map car sorted-items)))
+
+ ;; Store the last selected listbox item's key.
+ (define last-listbox-key (make-parameter #f))
+
+ (define (previous-key keys key)
+ (let ((index (list-index (cut eq? key <>) keys)))
+ (and index
+ (> index 0)
+ (list-ref keys (- index 1)))))
+
+ (define (next-key keys key)
+ (let ((index (list-index (cut eq? key <>) keys)))
+ (and index
+ (< index (- (length keys) 1))
+ (list-ref keys (+ index 1)))))
+
+ (define (set-default-item listbox listbox-keys default-item)
+ "Set the default item of LISTBOX to DEFAULT-ITEM. LISTBOX-KEYS is the
association list returned by the FILL-LISTBOX procedure. It is used because
the current listbox item has to be selected by key."
- (for-each (match-lambda
- ((key . item)
- (when (equal? item default-item)
- (set-current-listbox-entry-by-key listbox key))))
- listbox-keys))
-
- (let* ((listbox (make-listbox
- -1 -1
- listbox-height
- (logior FLAG-SCROLL FLAG-BORDER FLAG-RETURNEXIT
- (if listbox-allow-multiple?
- FLAG-MULTIPLE
- 0))))
- (form (make-form #:flags FLAG-NOF12))
- (info-textbox
- (make-reflowed-textbox -1 -1 info-text
- info-textbox-width
- #:flags FLAG-BORDER))
- (button (make-button -1 -1 button-text))
- (button2 (and button2-text
- (make-button -1 -1 button2-text)))
- (grid (vertically-stacked-grid
- GRID-ELEMENT-COMPONENT info-textbox
- GRID-ELEMENT-COMPONENT listbox
- GRID-ELEMENT-SUBGRID
- (apply
- horizontal-stacked-grid
- GRID-ELEMENT-COMPONENT button
- `(,@(if button2
- (list GRID-ELEMENT-COMPONENT button2)
- '())))))
- (sorted-items (if sort-listbox-items?
- (sort-listbox-items listbox-items)
- listbox-items))
- (keys (fill-listbox listbox sorted-items)))
-
- ;; On every listbox element change, check if we need to skip it. If yes,
- ;; depending on the 'last-listbox-key', jump forward or backward. If no,
- ;; do nothing.
- (add-component-callback
- listbox
- (lambda (component)
- (let* ((current-key (current-listbox-entry listbox))
- (listbox-keys (map car keys))
- (last-key (last-listbox-key))
- (item (assoc-ref keys current-key))
- (prev-key (previous-key listbox-keys current-key))
- (next-key (next-key listbox-keys current-key)))
- ;; Update last-listbox-key before a potential call to
- ;; set-current-listbox-entry-by-key, because it will immediately
- ;; cause this callback to be called for the new entry.
- (last-listbox-key current-key)
- (when (skip-item-procedure? item)
- (when (eq? prev-key last-key)
- (if next-key
- (set-current-listbox-entry-by-key listbox next-key)
- (set-current-listbox-entry-by-key listbox prev-key)))
- (when (eq? next-key last-key)
- (if prev-key
- (set-current-listbox-entry-by-key listbox prev-key)
- (set-current-listbox-entry-by-key listbox next-key)))))))
-
- (when listbox-default-item
- (set-default-item listbox keys listbox-default-item))
-
- (when allow-delete?
- (form-add-hotkey form KEY-DELETE))
+ (for-each (match-lambda
+ ((key . item)
+ (when (equal? item default-item)
+ (set-current-listbox-entry-by-key listbox key))))
+ listbox-keys))
+
+ (let* ((listbox (make-listbox
+ -1 -1
+ listbox-height
+ (logior FLAG-SCROLL FLAG-BORDER FLAG-RETURNEXIT
+ (if listbox-allow-multiple?
+ FLAG-MULTIPLE
+ 0))))
+ (form (make-form #:flags FLAG-NOF12))
+ (info-textbox
+ (make-reflowed-textbox -1 -1 info-text
+ info-textbox-width
+ #:flags FLAG-BORDER))
+ (button (make-button -1 -1 button-text))
+ (button2 (and button2-text
+ (make-button -1 -1 button2-text)))
+ (grid (vertically-stacked-grid
+ GRID-ELEMENT-COMPONENT info-textbox
+ GRID-ELEMENT-COMPONENT listbox
+ GRID-ELEMENT-SUBGRID
+ (apply
+ horizontal-stacked-grid
+ GRID-ELEMENT-COMPONENT button
+ `(,@(if button2
+ (list GRID-ELEMENT-COMPONENT button2)
+ '())))))
+ (sorted-items (if sort-listbox-items?
+ (sort-listbox-items listbox-items)
+ listbox-items))
+ (keys (fill-listbox listbox sorted-items)))
+
+ (define (choice->item str)
+ ;; Return the item that corresponds to STR.
+ (match (find (match-lambda
+ ((key . item)
+ (string=? str (listbox-item->text item))))
+ keys)
+ ((key . item) item)
+ (#f (raise (condition (&installer-step-abort))))))
+
+ ;; On every listbox element change, check if we need to skip it. If yes,
+ ;; depending on the 'last-listbox-key', jump forward or backward. If no,
+ ;; do nothing.
+ (add-component-callback
+ listbox
+ (lambda (component)
+ (let* ((current-key (current-listbox-entry listbox))
+ (listbox-keys (map car keys))
+ (last-key (last-listbox-key))
+ (item (assoc-ref keys current-key))
+ (prev-key (previous-key listbox-keys current-key))
+ (next-key (next-key listbox-keys current-key)))
+ ;; Update last-listbox-key before a potential call to
+ ;; set-current-listbox-entry-by-key, because it will immediately
+ ;; cause this callback to be called for the new entry.
+ (last-listbox-key current-key)
+ (when (skip-item-procedure? item)
+ (when (eq? prev-key last-key)
+ (if next-key
+ (set-current-listbox-entry-by-key listbox next-key)
+ (set-current-listbox-entry-by-key listbox prev-key)))
+ (when (eq? next-key last-key)
+ (if prev-key
+ (set-current-listbox-entry-by-key listbox prev-key)
+ (set-current-listbox-entry-by-key listbox next-key)))))))
+
+ (when listbox-default-item
+ (set-default-item listbox keys listbox-default-item))
+
+ (when allow-delete?
+ (form-add-hotkey form KEY-DELETE))
- (add-form-to-grid grid form #t)
- (make-wrapped-grid-window grid title)
+ (add-form-to-grid grid form #t)
+ (make-wrapped-grid-window grid title)
- (receive (exit-reason argument)
- (run-form form)
- (dynamic-wind
- (const #t)
- (lambda ()
- (case exit-reason
- ((exit-component)
- (cond
- ((components=? argument button)
- (button-callback-procedure))
- ((and button2
- (components=? argument button2))
- (button2-callback-procedure))
- ((components=? argument listbox)
- (if listbox-allow-multiple?
- (let* ((entries (listbox-selection listbox))
- (items (map (lambda (entry)
- (assoc-ref keys entry))
- entries)))
- (listbox-callback-procedure items))
- (let* ((entry (current-listbox-entry listbox))
- (item (assoc-ref keys entry)))
- (listbox-callback-procedure item))))))
- ((exit-hotkey)
- (let* ((entry (current-listbox-entry listbox))
- (item (assoc-ref keys entry)))
- (hotkey-callback-procedure argument item)))))
- (lambda ()
- (destroy-form-and-pop form))))))
+ (receive (exit-reason argument)
+ (run-form-with-clients form
+ `(list-selection (title ,title)
+ (multiple-choices?
+ ,listbox-allow-multiple?)
+ (items
+ ,(map listbox-item->text
+ listbox-items))))
+ (dynamic-wind
+ (const #t)
+ (lambda ()
+ (match exit-reason
+ ('exit-component
+ (cond
+ ((components=? argument button)
+ (button-callback-procedure))
+ ((and button2
+ (components=? argument button2))
+ (button2-callback-procedure))
+ ((components=? argument listbox)
+ (if listbox-allow-multiple?
+ (let* ((entries (listbox-selection listbox))
+ (items (map (lambda (entry)
+ (assoc-ref keys entry))
+ entries)))
+ (listbox-callback-procedure items))
+ (let* ((entry (current-listbox-entry listbox))
+ (item (assoc-ref keys entry)))
+ (listbox-callback-procedure item))))))
+ ('exit-fd-ready
+ (let* ((choice argument)
+ (item (if listbox-allow-multiple?
+ (map choice->item choice)
+ (choice->item choice))))
+ (client-callback-procedure item)))
+ ('exit-hotkey
+ (let* ((entry (current-listbox-entry listbox))
+ (item (assoc-ref keys entry)))
+ (hotkey-callback-procedure argument item)))))
+ (lambda ()
+ (destroy-form-and-pop form)))))))
(define* (run-scale-page #:key
title
@@ -498,48 +653,65 @@ ITEMS when 'Ok' is pressed."
items
selection))
- (let* ((checkbox-tree
- (make-checkboxtree -1 -1
- checkbox-tree-height
- FLAG-BORDER))
- (info-textbox
- (make-reflowed-textbox -1 -1 info-text
- info-textbox-width
- #:flags FLAG-BORDER))
- (ok-button (make-button -1 -1 (G_ "OK")))
- (exit-button (make-button -1 -1 (G_ "Exit")))
- (grid (vertically-stacked-grid
- GRID-ELEMENT-COMPONENT info-textbox
- GRID-ELEMENT-COMPONENT checkbox-tree
- GRID-ELEMENT-SUBGRID
- (horizontal-stacked-grid
- GRID-ELEMENT-COMPONENT ok-button
- GRID-ELEMENT-COMPONENT exit-button)))
- (keys (fill-checkbox-tree checkbox-tree items))
- (form (make-form #:flags FLAG-NOF12)))
+ (let loop ()
+ (let* ((checkbox-tree
+ (make-checkboxtree -1 -1
+ checkbox-tree-height
+ FLAG-BORDER))
+ (info-textbox
+ (make-reflowed-textbox -1 -1 info-text
+ info-textbox-width
+ #:flags FLAG-BORDER))
+ (ok-button (make-button -1 -1 (G_ "OK")))
+ (exit-button (make-button -1 -1 (G_ "Exit")))
+ (grid (vertically-stacked-grid
+ GRID-ELEMENT-COMPONENT info-textbox
+ GRID-ELEMENT-COMPONENT checkbox-tree
+ GRID-ELEMENT-SUBGRID
+ (horizontal-stacked-grid
+ GRID-ELEMENT-COMPONENT ok-button
+ GRID-ELEMENT-COMPONENT exit-button)))
+ (keys (fill-checkbox-tree checkbox-tree items))
+ (form (make-form #:flags FLAG-NOF12)))
- (add-form-to-grid grid form #t)
- (make-wrapped-grid-window grid title)
+ (define (choice->item str)
+ ;; Return the item that corresponds to STR.
+ (match (find (match-lambda
+ ((key . item)
+ (string=? str (item->text item))))
+ keys)
+ ((key . item) item)
+ (#f (raise (condition (&installer-step-abort))))))
- (receive (exit-reason argument)
- (run-form form)
- (dynamic-wind
- (const #t)
- (lambda ()
- (case exit-reason
- ((exit-component)
- (cond
- ((components=? argument ok-button)
- (let* ((entries (current-checkbox-selection checkbox-tree))
- (current-items (map (lambda (entry)
- (assoc-ref keys entry))
- entries)))
- (ok-button-callback-procedure)
- current-items))
- ((components=? argument exit-button)
- (exit-button-callback-procedure))))))
- (lambda ()
- (destroy-form-and-pop form))))))
+ (add-form-to-grid grid form #t)
+ (make-wrapped-grid-window grid title)
+
+ (receive (exit-reason argument)
+ (run-form-with-clients form
+ `(checkbox-list (title ,title)
+ (text ,info-text)
+ (items
+ ,(map item->text items))))
+ (dynamic-wind
+ (const #t)
+
+ (lambda ()
+ (match exit-reason
+ ('exit-component
+ (cond
+ ((components=? argument ok-button)
+ (let* ((entries (current-checkbox-selection checkbox-tree))
+ (current-items (map (lambda (entry)
+ (assoc-ref keys entry))
+ entries)))
+ (ok-button-callback-procedure)
+ current-items))
+ ((components=? argument exit-button)
+ (exit-button-callback-procedure))))
+ ('exit-fd-ready
+ (map choice->item argument))))
+ (lambda ()
+ (destroy-form-and-pop form)))))))
(define* (edit-file file #:key locale)
"Spawn an editor for FILE."
@@ -547,9 +719,8 @@ ITEMS when 'Ok' is pressed."
(newt-suspend)
;; Use Nano because it syntax-highlights Scheme by default.
;; TODO: Add a menu to choose an editor?
- (run-shell-command (string-append "/run/current-system/profile/bin/nano "
- file)
- #:locale locale)
+ (run-command (list "/run/current-system/profile/bin/nano" file)
+ #:locale locale)
(newt-resume))
(define* (run-file-textbox-page #:key
@@ -606,13 +777,16 @@ ITEMS when 'Ok' is pressed."
text))
(receive (exit-reason argument)
- (run-form form)
+ (run-form-with-clients form
+ `(file-dialog (title ,title)
+ (text ,info-text)
+ (file ,file)))
(define result
(dynamic-wind
(const #t)
(lambda ()
- (case exit-reason
- ((exit-component)
+ (match exit-reason
+ ('exit-component
(cond
((components=? argument ok-button)
(ok-button-callback-procedure))
@@ -621,10 +795,15 @@ ITEMS when 'Ok' is pressed."
(exit-button-callback-procedure))
((and edit-button?
(components=? argument edit-button))
- (edit-file file))))))
+ (edit-file file))))
+ ('exit-fd-ready
+ (if argument
+ (ok-button-callback-procedure)
+ (exit-button-callback-procedure)))))
(lambda ()
(destroy-form-and-pop form))))
- (if (components=? argument edit-button)
+ (if (and (eq? exit-reason 'exit-component)
+ (components=? argument edit-button))
(loop) ;recurse in tail position
result)))))
diff --git a/gnu/installer/newt/partition.scm b/gnu/installer/newt/partition.scm
index 3cba7f77dd..c925e410a9 100644
--- a/gnu/installer/newt/partition.scm
+++ b/gnu/installer/newt/partition.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com>
-;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019, 2020 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
@@ -682,6 +682,12 @@ by pressing the Exit button.~%~%")))
#:allow-delete? #t
#:button-text (G_ "OK")
#:button-callback-procedure button-ok-action
+
+ ;; Consider client replies equivalent to hitting the "OK" button.
+ ;; XXX: In practice this means that clients cannot do anything but
+ ;; approve the predefined list of partitions.
+ #:client-callback-procedure (lambda (_) (button-ok-action))
+
#:button2-text (G_ "Exit")
#:button2-callback-procedure button-exit-action
#:listbox-callback-procedure listbox-action
diff --git a/gnu/installer/newt/user.scm b/gnu/installer/newt/user.scm
index b01d52172b..ad711d665a 100644
--- a/gnu/installer/newt/user.scm
+++ b/gnu/installer/newt/user.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com>
-;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019, 2020 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
@@ -23,6 +23,7 @@
#:use-module ((gnu installer steps) #:select (&installer-step-abort))
#:use-module (gnu installer newt page)
#:use-module (gnu installer newt utils)
+ #:use-module (gnu installer utils)
#:use-module (guix i18n)
#:use-module (newt)
#:use-module (ice-9 match)
@@ -115,6 +116,7 @@ REAL-NAME, and HOME-DIRECTORY as the initial values in the form."
GRID-ELEMENT-SUBGRID entry-grid
GRID-ELEMENT-SUBGRID button-grid)
title)
+
(let ((error-page
(lambda ()
(run-error-page (G_ "Empty inputs are not allowed.")
@@ -230,33 +232,45 @@ administrator (\"root\").")
(set-current-component form ok-button))
(receive (exit-reason argument)
- (run-form form)
+ (run-form-with-clients form '(add-users))
(dynamic-wind
(const #t)
(lambda ()
- (when (eq? exit-reason 'exit-component)
- (cond
- ((components=? argument add-button)
- (run (cons (run-user-add-page) users)))
- ((components=? argument del-button)
- (let* ((current-user-key (current-listbox-entry listbox))
- (users
- (map (cut assoc-ref <> 'user)
- (remove (lambda (element)
- (equal? (assoc-ref element 'key)
- current-user-key))
- listbox-elements))))
- (run users)))
- ((components=? argument ok-button)
- (when (null? users)
- (run-error-page (G_ "Please create at least one user.")
- (G_ "No user"))
- (run users))
- (reverse users))
- ((components=? argument exit-button)
- (raise
- (condition
- (&installer-step-abort)))))))
+ (match exit-reason
+ ('exit-component
+ (cond
+ ((components=? argument add-button)
+ (run (cons (run-user-add-page) users)))
+ ((components=? argument del-button)
+ (let* ((current-user-key (current-listbox-entry listbox))
+ (users
+ (map (cut assoc-ref <> 'user)
+ (remove (lambda (element)
+ (equal? (assoc-ref element 'key)
+ current-user-key))
+ listbox-elements))))
+ (run users)))
+ ((components=? argument ok-button)
+ (when (null? users)
+ (run-error-page (G_ "Please create at least one user.")
+ (G_ "No user"))
+ (run users))
+ (reverse users))
+ ((components=? argument exit-button)
+ (raise
+ (condition
+ (&installer-step-abort))))))
+ ('exit-fd-ready
+ ;; Read the complete user list at once.
+ (match argument
+ ((('user ('name names) ('real-name real-names)
+ ('home-directory homes) ('password passwords))
+ ..1)
+ (map (lambda (name real-name home password)
+ (user (name name) (real-name real-name)
+ (home-directory home)
+ (password password)))
+ names real-names homes passwords))))))
(lambda ()
(destroy-form-and-pop form))))))
diff --git a/gnu/installer/newt/welcome.scm b/gnu/installer/newt/welcome.scm
index aec3e7a612..1b4b2df816 100644
--- a/gnu/installer/newt/welcome.scm
+++ b/gnu/installer/newt/welcome.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2020 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -11,16 +12,20 @@
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu installer newt welcome)
+ #:use-module (gnu installer steps)
#:use-module (gnu installer utils)
+ #:use-module (gnu installer newt page)
#:use-module (gnu installer newt utils)
#:use-module (guix build syscalls)
#:use-module (guix i18n)
+ #:use-module (srfi srfi-1)
+ #:use-module (srfi srfi-34)
+ #:use-module (srfi srfi-35)
#:use-module (ice-9 match)
#:use-module (ice-9 receive)
#:use-module (newt)
@@ -66,24 +71,43 @@ we want this page to occupy all the screen space available."
GRID-ELEMENT-COMPONENT options-listbox))
(form (make-form)))
+ (define (choice->item str)
+ ;; Return the item that corresponds to STR.
+ (match (find (match-lambda
+ ((key . item)
+ (string=? str (listbox-item->text item))))
+ keys)
+ ((key . item) item)
+ (#f (raise (condition (&installer-step-abort))))))
+
(set-textbox-text logo-textbox (read-all logo))
(add-form-to-grid grid form #t)
(make-wrapped-grid-window grid title)
(receive (exit-reason argument)
- (run-form form)
+ (run-form-with-clients form
+ `(menu (title ,title)
+ (text ,info-text)
+ (items
+ ,(map listbox-item->text
+ listbox-items))))
(dynamic-wind
(const #t)
(lambda ()
- (when (eq? exit-reason 'exit-component)
- (cond
- ((components=? argument options-listbox)
- (let* ((entry (current-listbox-entry options-listbox))
- (item (assoc-ref keys entry)))
- (match item
- ((text . proc)
- (proc))))))))
+ (match exit-reason
+ ('exit-component
+ (let* ((entry (current-listbox-entry options-listbox))
+ (item (assoc-ref keys entry)))
+ (match item
+ ((text . proc)
+ (proc)))))
+ ('exit-fd-ready
+ (let* ((choice argument)
+ (item (choice->item choice)))
+ (match item
+ ((text . proc)
+ (proc)))))))
(lambda ()
(destroy-form-and-pop form))))))
diff --git a/gnu/installer/steps.scm b/gnu/installer/steps.scm
index b2fc819d89..0b6d8e4649 100644
--- a/gnu/installer/steps.scm
+++ b/gnu/installer/steps.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2020 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -19,6 +20,7 @@
(define-module (gnu installer steps)
#:use-module (guix records)
#:use-module (guix build utils)
+ #:use-module (gnu installer utils)
#:use-module (ice-9 match)
#:use-module (ice-9 pretty-print)
#:use-module (srfi srfi-1)
@@ -185,13 +187,18 @@ return the accumalated result so far."
#:todo-steps rest-steps
#:done-steps (append done-steps (list step))))))))
- (call-with-prompt 'raise-above
- (lambda ()
- (run '()
- #:todo-steps steps
- #:done-steps '()))
- (lambda (k condition)
- (raise condition))))
+ ;; Ignore SIGPIPE so that we don't die if a client closes the connection
+ ;; prematurely.
+ (sigaction SIGPIPE SIG_IGN)
+
+ (with-server-socket
+ (call-with-prompt 'raise-above
+ (lambda ()
+ (run '()
+ #:todo-steps steps
+ #:done-steps '()))
+ (lambda (k condition)
+ (raise condition)))))
(define (find-step-by-id steps id)
"Find and return the step in STEPS whose id is equal to ID."
@@ -249,3 +256,7 @@ found in RESULTS."
(pretty-print part port)))
configuration)
(flush-output-port port))))
+
+;;; Local Variables:
+;;; eval: (put 'with-server-socket 'scheme-indent-function 0)
+;;; End:
diff --git a/gnu/installer/tests.scm b/gnu/installer/tests.scm
new file mode 100644
index 0000000000..6f5393e3ab
--- /dev/null
+++ b/gnu/installer/tests.scm
@@ -0,0 +1,340 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2020 Ludovic Courtès <ludo@gnu.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu installer tests)
+ #:use-module (srfi srfi-1)
+ #:use-module (srfi srfi-34)
+ #:use-module (srfi srfi-35)
+ #:use-module (ice-9 match)
+ #:use-module (ice-9 regex)
+ #:use-module (ice-9 pretty-print)
+ #:export (&pattern-not-matched
+ pattern-not-matched?
+
+ %installer-socket-file
+ open-installer-socket
+
+ converse
+ conversation-log-port
+
+ choose-locale+keyboard
+ enter-host-name+passwords
+ choose-services
+ choose-partitioning
+ conclude-installation
+
+ edit-configuration-file))
+
+;;; Commentary:
+;;;
+;;; This module provides tools to test the guided "graphical" installer in a
+;;; non-interactive fashion. The core of it is 'converse': it allows you to
+;;; state Expect-style dialogues, which happen over the Unix-domain socket the
+;;; installer listens to. Higher-level procedures such as
+;;; 'choose-locale+keyboard' are provided to perform specific parts of the
+;;; dialogue.
+;;;
+;;; Code:
+
+(define %installer-socket-file
+ ;; Socket the installer listens to.
+ "/var/guix/installer-socket")
+
+(define* (open-installer-socket #:optional (file %installer-socket-file))
+ "Return a socket connected to the installer."
+ (let ((sock (socket AF_UNIX SOCK_STREAM 0)))
+ (connect sock AF_UNIX file)
+ sock))
+
+(define-condition-type &pattern-not-matched &error
+ pattern-not-matched?
+ (pattern pattern-not-matched-pattern)
+ (sexp pattern-not-matched-sexp))
+
+(define (pattern-error pattern sexp)
+ (raise (condition
+ (&pattern-not-matched
+ (pattern pattern) (sexp sexp)))))
+
+(define conversation-log-port
+ ;; Port where debugging info is logged
+ (make-parameter (current-error-port)))
+
+(define (converse-debug pattern)
+ (format (conversation-log-port)
+ "conversation expecting pattern ~s~%"
+ pattern))
+
+(define-syntax converse
+ (lambda (s)
+ "Convert over PORT: read sexps from there, match them against each
+PATTERN, and send the corresponding REPLY. Raise to '&pattern-not-matched'
+when one of the PATTERNs is not matched."
+
+ ;; XXX: Strings that appear in PATTERNs must be in the language the
+ ;; installer is running in. In the future, we should add support to allow
+ ;; writing English strings in PATTERNs and have the pattern matcher
+ ;; automatically translate them.
+
+ ;; Here we emulate 'pmatch' syntax on top of 'match'. This is ridiculous
+ ;; but that's because 'pmatch' compares objects with 'eq?', making it
+ ;; pretty useless, and it doesn't support ellipses and such.
+
+ (define (quote-pattern s)
+ ;; Rewrite the pattern S from pmatch style (a ,b) to match style like
+ ;; ('a b).
+ (with-ellipsis :::
+ (syntax-case s (unquote _ ...)
+ ((unquote id) #'id)
+ (_ #'_)
+ (... #'...)
+ (id
+ (identifier? #'id)
+ #''id)
+ ((lst :::) (map quote-pattern #'(lst :::)))
+ (pattern #'pattern))))
+
+ (define (match-pattern s)
+ ;; Match one pattern without a guard.
+ (syntax-case s ()
+ ((port (pattern reply) continuation)
+ (with-syntax ((pattern (quote-pattern #'pattern)))
+ #'(let ((pat 'pattern))
+ (converse-debug pat)
+ (match (read port)
+ (pattern
+ (let ((data (call-with-values (lambda () reply)
+ list)))
+ (for-each (lambda (obj)
+ (write obj port)
+ (newline port))
+ data)
+ (force-output port)
+ (continuation port)))
+ (sexp
+ (pattern-error pat sexp))))))))
+
+ (syntax-case s ()
+ ((_ port (pattern reply) rest ...)
+ (match-pattern #'(port (pattern reply)
+ (lambda (port)
+ (converse port rest ...)))))
+ ((_ port (pattern guard reply) rest ...)
+ #`(let ((skip? (not guard))
+ (next (lambda (p)
+ (converse p rest ...))))
+ (if skip?
+ (next port)
+ #,(match-pattern #'(port (pattern reply) next)))))
+ ((_ port)
+ #t))))
+
+(define* (choose-locale+keyboard port
+ #:key
+ (language "English")
+ (location "Hong Kong")
+ (timezone '("Europe" "Zagreb"))
+ (keyboard
+ '("English (US)"
+ "English (intl., with AltGr dead keys)")))
+ "Converse over PORT with the guided installer to choose the specified
+LANGUAGE, LOCATION, TIMEZONE, and KEYBOARD."
+ (converse port
+ ((list-selection (title "Locale language")
+ (multiple-choices? #f)
+ (items _))
+ language)
+ ((list-selection (title "Locale location")
+ (multiple-choices? #f)
+ (items _))
+ location)
+ ((menu (title "GNU Guix install")
+ (text _)
+ (items (,guided _ ...))) ;"Guided graphical installation"
+ guided)
+ ((list-selection (title "Timezone")
+ (multiple-choices? #f)
+ (items _))
+ (first timezone))
+ ((list-selection (title "Timezone")
+ (multiple-choices? #f)
+ (items _))
+ (second timezone))
+ ((list-selection (title "Layout")
+ (multiple-choices? #f)
+ (items _))
+ (first keyboard))
+ ((list-selection (title "Variant")
+ (multiple-choices? #f)
+ (items _))
+ (second keyboard))))
+
+(define* (enter-host-name+passwords port
+ #:key
+ (host-name "guix")
+ (root-password "foo")
+ (users '(("alice" "pass1")
+ ("bob" "pass2")
+ ("charlie" "pass3"))))
+ "Converse over PORT with the guided installer to choose HOST-NAME,
+ROOT-PASSWORD, and USERS."
+ (converse port
+ ((input (title "Hostname") (text _) (default _))
+ host-name)
+ ((input (title "System administrator password") (text _) (default _))
+ root-password)
+ ((input (title "Password confirmation required") (text _) (default _))
+ root-password)
+ ((add-users)
+ (match users
+ (((names passwords) ...)
+ (map (lambda (name password)
+ `(user (name ,name) (real-name ,(string-titlecase name))
+ (home-directory ,(string-append "/home/" name))
+ (password ,password)))
+ names passwords))))))
+
+(define* (choose-services port
+ #:key
+ (desktop-environments '("GNOME"))
+ (choose-network-service?
+ (lambda (service)
+ (or (string-contains service "SSH")
+ (string-contains service "NSS"))))
+ (choose-network-management-tool?
+ (lambda (service)
+ (string-contains service "DHCP"))))
+ "Converse over PORT to choose networking services."
+ (converse port
+ ((checkbox-list (title "Desktop environment") (text _)
+ (items _))
+ desktop-environments)
+ ((checkbox-list (title "Network service") (text _)
+ (items ,services))
+ (filter choose-network-service? services))
+
+ ;; The "Network management" dialog shows up only when no desktop
+ ;; environments have been selected, hence the guard.
+ ((list-selection (title "Network management")
+ (multiple-choices? #f)
+ (items ,services))
+ (null? desktop-environments)
+ (find choose-network-management-tool? services))))
+
+(define (edit-configuration-file file)
+ "Edit FILE, an operating system configuration file generated by the
+installer, by adding a marionette service such that the installed OS is
+instrumented for further testing."
+ (define (read-expressions port)
+ (let loop ((result '()))
+ (match (read port)
+ ((? eof-object?)
+ (reverse result))
+ (exp
+ (loop (cons exp result))))))
+
+ (define (edit exp)
+ (match exp
+ (('operating-system _ ...)
+ `(marionette-operating-system ,exp
+ #:imported-modules
+ '((gnu services herd)
+ (guix build utils)
+ (guix combinators))))
+ (_
+ exp)))
+
+ (let ((content (call-with-input-file file read-expressions)))
+ (call-with-output-file file
+ (lambda (port)
+ (format port "\
+;; Operating system configuration edited for automated testing.~%~%")
+
+ (pretty-print '(use-modules (gnu tests)) port)
+ (for-each (lambda (exp)
+ (pretty-print (edit exp) port)
+ (newline port))
+ content)))
+
+ #t))
+
+(define* (choose-partitioning port
+ #:key
+ (encrypted? #t)
+ (passphrase "thepassphrase")
+ (edit-configuration-file
+ edit-configuration-file))
+ "Converse over PORT to choose the partitioning method. When ENCRYPTED? is
+true, choose full-disk encryption with PASSPHRASE as the LUKS passphrase.
+This conversation goes past the final dialog box that shows the configuration
+file, actually starting the installation process."
+ (converse port
+ ((list-selection (title "Partitioning method")
+ (multiple-choices? #f)
+ (items (,not-encrypted ,encrypted _ ...)))
+ (if encrypted?
+ encrypted
+ not-encrypted))
+ ((list-selection (title "Disk") (multiple-choices? #f)
+ (items (,disk _ ...)))
+ disk)
+
+ ;; The "Partition table" dialog pops up only if there's not already a
+ ;; partition table.
+ ((list-selection (title "Partition table")
+ (multiple-choices? #f)
+ (items _))
+ "gpt")
+ ((list-selection (title "Partition scheme")
+ (multiple-choices? #f)
+ (items (,one-partition _ ...)))
+ one-partition)
+ ((list-selection (title "Guided partitioning")
+ (multiple-choices? #f)
+ (items (,disk _ ...)))
+ disk)
+ ((input (title "Password required")
+ (text _) (default #f))
+ encrypted? ;only when ENCRYPTED?
+ passphrase)
+ ((input (title "Password confirmation required")
+ (text _) (default #f))
+ encrypted?
+ passphrase)
+ ((confirmation (title "Format disk?") (text _))
+ #t)
+ ((info (title "Preparing partitions") _ ...)
+ (values)) ;nothing to return
+ ((file-dialog (title "Configuration file")
+ (text _)
+ (file ,configuration-file))
+ (edit-configuration-file configuration-file))))
+
+(define (conclude-installation port)
+ "Conclude the installation by checking over PORT that we get the final
+messages once the 'guix system init' process has completed."
+ (converse port
+ ((pause) ;"Press Enter to continue."
+ #t)
+ ((installation-complete) ;congratulations!
+ (values))))
+
+;;; Local Variables:
+;;; eval: (put 'converse 'scheme-indent-function 1)
+;;; eval: (put 'with-ellipsis 'scheme-indent-function 1)
+;;; End:
diff --git a/gnu/installer/utils.scm b/gnu/installer/utils.scm
index 842bd02ced..0a91ae1e4a 100644
--- a/gnu/installer/utils.scm
+++ b/gnu/installer/utils.scm
@@ -21,7 +21,9 @@
#:use-module (guix utils)
#:use-module (guix build utils)
#:use-module (guix i18n)
+ #:use-module (srfi srfi-1)
#:use-module (srfi srfi-34)
+ #:use-module (ice-9 match)
#:use-module (ice-9 rdelim)
#:use-module (ice-9 regex)
#:use-module (ice-9 format)
@@ -30,10 +32,15 @@
read-all
nearest-exact-integer
read-percentage
- run-shell-command
+ run-command
syslog-port
- syslog))
+ syslog
+
+ with-server-socket
+ current-server-socket
+ current-clients
+ send-to-clients))
(define* (read-lines #:optional (port (current-input-port)))
"Read lines from PORT and return them as a list."
@@ -61,44 +68,48 @@ number. If no percentage is found, return #f"
(and result
(string->number (match:substring result 1)))))
-(define* (run-shell-command command #:key locale)
- "Run COMMAND, a string, with Bash, and in the given LOCALE. Return true if
+(define* (run-command command #:key locale)
+ "Run COMMAND, a list of strings, in the given LOCALE. Return true if
COMMAND exited successfully, #f otherwise."
+ (define env (environ))
+
(define (pause)
(format #t (G_ "Press Enter to continue.~%"))
- (read-line (current-input-port)))
-
- (call-with-temporary-output-file
- (lambda (file port)
- (when locale
- (let ((supported? (false-if-exception
- (setlocale LC_ALL locale))))
- ;; If LOCALE is not supported, then set LANGUAGE, which might at
- ;; least give us translated messages.
- (if supported?
- (format port "export LC_ALL=\"~a\"~%" locale)
- (format port "export LANGUAGE=\"~a\"~%"
- (string-take locale
- (string-index locale #\_))))))
-
- (format port "exec ~a~%" command)
- (close port)
-
- (guard (c ((invoke-error? c)
- (newline)
- (format (current-error-port)
- (G_ "Command failed with exit code ~a.~%")
- (invoke-error-exit-status c))
- (syslog "command ~s failed with exit code ~a"
- command (invoke-error-exit-status c))
- (pause)
- #f))
- (syslog "running command ~s~%" command)
- (invoke "bash" "--init-file" file)
- (syslog "command ~s succeeded~%" command)
- (newline)
- (pause)
- #t))))
+ (send-to-clients '(pause))
+ (environ env) ;restore environment variables
+ (match (select (cons (current-input-port) (current-clients))
+ '() '())
+ (((port _ ...) _ _)
+ (read-line port))))
+
+ (setenv "PATH" "/run/current-system/profile/bin")
+
+ (when locale
+ (let ((supported? (false-if-exception
+ (setlocale LC_ALL locale))))
+ ;; If LOCALE is not supported, then set LANGUAGE, which might at
+ ;; least give us translated messages.
+ (if supported?
+ (setenv "LC_ALL" locale)
+ (setenv "LANGUAGE"
+ (string-take locale
+ (string-index locale #\_))))))
+
+ (guard (c ((invoke-error? c)
+ (newline)
+ (format (current-error-port)
+ (G_ "Command failed with exit code ~a.~%")
+ (invoke-error-exit-status c))
+ (syslog "command ~s failed with exit code ~a"
+ command (invoke-error-exit-status c))
+ (pause)
+ #f))
+ (syslog "running command ~s~%" command)
+ (apply invoke command)
+ (syslog "command ~s succeeded~%" command)
+ (newline)
+ (pause)
+ #t))
;;;
@@ -134,3 +145,76 @@ COMMAND exited successfully, #f otherwise."
(with-syntax ((fmt (string-append "installer[~d]: "
(syntax->datum #'fmt))))
#'(format (syslog-port) fmt (getpid) args ...))))))
+
+
+;;;
+;;; Client protocol.
+;;;
+
+(define %client-socket-file
+ ;; Unix-domain socket where the installer accepts connections.
+ "/var/guix/installer-socket")
+
+(define current-server-socket
+ ;; Socket on which the installer is currently accepting connections, or #f.
+ (make-parameter #f))
+
+(define current-clients
+ ;; List of currently connected clients.
+ (make-parameter '()))
+
+(define* (open-server-socket
+ #:optional (socket-file %client-socket-file))
+ "Open SOCKET-FILE as a Unix-domain socket to accept incoming connections and
+return it."
+ (mkdir-p (dirname socket-file))
+ (when (file-exists? socket-file)
+ (delete-file socket-file))
+ (let ((sock (socket AF_UNIX SOCK_STREAM 0)))
+ (bind sock AF_UNIX socket-file)
+ (listen sock 0)
+ sock))
+
+(define (call-with-server-socket thunk)
+ (if (current-server-socket)
+ (thunk)
+ (let ((socket (open-server-socket)))
+ (dynamic-wind
+ (const #t)
+ (lambda ()
+ (parameterize ((current-server-socket socket))
+ (thunk)))
+ (lambda ()
+ (close-port socket))))))
+
+(define-syntax-rule (with-server-socket exp ...)
+ "Evaluate EXP with 'current-server-socket' parameterized to a currently
+accepting socket."
+ (call-with-server-socket (lambda () exp ...)))
+
+(define* (send-to-clients exp)
+ "Send EXP to all the current clients."
+ (define remainder
+ (fold (lambda (client remainder)
+ (catch 'system-error
+ (lambda ()
+ (write exp client)
+ (newline client)
+ (force-output client)
+ (cons client remainder))
+ (lambda args
+ ;; We might get EPIPE if the client disconnects; when that
+ ;; happens, remove CLIENT from the set of available clients.
+ (let ((errno (system-error-errno args)))
+ (if (memv errno (list EPIPE ECONNRESET ECONNABORTED))
+ (begin
+ (syslog "removing client ~s due to ~s while replying~%"
+ (fileno client) (strerror errno))
+ (false-if-exception (close-port client))
+ remainder)
+ (cons client remainder))))))
+ '()
+ (current-clients)))
+
+ (current-clients (reverse remainder))
+ exp)
diff --git a/gnu/local.mk b/gnu/local.mk
index 68ed1d4813..a350174ee2 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1,5 +1,5 @@
# GNU Guix --- Functional package management for GNU
-# Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
+# Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
# Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Andreas Enge <andreas@enge.fr>
# Copyright © 2016 Mathieu Lirzin <mthl@gnu.org>
# Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Mark H Weaver <mhw@netris.org>
@@ -656,6 +656,7 @@ INSTALLER_MODULES = \
%D%/installer/record.scm \
%D%/installer/services.scm \
%D%/installer/steps.scm \
+ %D%/installer/tests.scm \
%D%/installer/timezone.scm \
%D%/installer/user.scm \
%D%/installer/utils.scm \
@@ -720,7 +721,6 @@ dist_patch_DATA = \
%D%/packages/patches/antiword-CVE-2014-8123.patch \
%D%/packages/patches/antlr3-3_1-fix-java8-compilation.patch \
%D%/packages/patches/antlr3-3_3-fix-java8-compilation.patch \
- %D%/packages/patches/appstream-glib-2020.patch \
%D%/packages/patches/apr-skip-getservbyname-test.patch \
%D%/packages/patches/arm-trusted-firmware-disable-hdcp.patch \
%D%/packages/patches/aspell-default-dict-dir.patch \
@@ -771,9 +771,7 @@ dist_patch_DATA = \
%D%/packages/patches/catdoc-CVE-2017-11110.patch \
%D%/packages/patches/cdparanoia-fpic.patch \
%D%/packages/patches/cdrtools-3.01-mkisofs-isoinfo.patch \
- %D%/packages/patches/ceph-boost-compat.patch \
%D%/packages/patches/ceph-disable-cpu-optimizations.patch \
- %D%/packages/patches/ceph-volume-respect-PATH.patch \
%D%/packages/patches/chmlib-inttypes.patch \
%D%/packages/patches/clamav-config-llvm-libs.patch \
%D%/packages/patches/clamav-system-tomsfastmath.patch \
@@ -1097,7 +1095,6 @@ dist_patch_DATA = \
%D%/packages/patches/libexif-CVE-2018-20030.patch \
%D%/packages/patches/libextractor-exiv2.patch \
%D%/packages/patches/libgeotiff-adapt-test-script-for-proj-6.2.patch \
- %D%/packages/patches/libgit2-avoid-python.patch \
%D%/packages/patches/libgit2-mtime-0.patch \
%D%/packages/patches/libgnome-encoding.patch \
%D%/packages/patches/libgnomeui-utf8.patch \
@@ -1411,6 +1408,7 @@ dist_patch_DATA = \
%D%/packages/patches/soundconverter-remove-gconf-dependency.patch \
%D%/packages/patches/spice-fix-test-armhf.patch \
%D%/packages/patches/steghide-fixes.patch \
+ %D%/packages/patches/suitesparse-mongoose-cmake.patch \
%D%/packages/patches/superlu-dist-awpm-grid.patch \
%D%/packages/patches/superlu-dist-scotchmetis.patch \
%D%/packages/patches/supertux-unbundle-squirrel.patch \
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index cbddb8c407..2406aa16b2 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -322,7 +322,7 @@ namespace ARDOUR { const char* revision = \"" version "\" ; }"))
("itstool" ,itstool)
("perl" ,perl)
("pkg-config" ,pkg-config)))
- (home-page "http://ardour.org")
+ (home-page "https://ardour.org")
(synopsis "Digital audio workstation")
(description
"Ardour is a multi-channel digital audio workstation, allowing users to
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index f283f9eec3..15ab54dd8a 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -756,7 +756,7 @@ interfaces and processes.")
(propagated-inputs
`(("python-six" ,python-six)
("python-traceback2" ,python-traceback2)))
- (home-page "http://pypi.python.org/pypi/unittest2")
+ (home-page "https://pypi.org/project/unittest2/")
(synopsis "Python unit testing library")
(description
"Unittest2 is a replacement for the unittest module in the Python
@@ -1540,7 +1540,7 @@ the last py.test invocation.")
(synopsis "Py.test plugin to test server connections locally")
(description "Pytest-localserver is a plugin for the pytest testing
framework which enables you to test server connections locally.")
- (home-page "https://pypi.python.org/pypi/pytest-localserver")
+ (home-page "https://pypi.org/project/pytest-localserver/")
(license license:expat)))
(define-public python-pytest-xprocess
@@ -1994,7 +1994,7 @@ especially -cover-package.")
(base32
"0y8d0zwiqar51kxj8lzmkvwc3b8kazb04gk5zcb4nzg5k68zmhq5"))))
(build-system python-build-system)
- (home-page "http://pypi.python.org/pypi/discover/")
+ (home-page "https://pypi.org/project/discover/")
(synopsis
"Python test discovery for unittest")
(description
diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm
index 3bdd406a47..2b3b5d7df6 100644
--- a/gnu/packages/chemistry.scm
+++ b/gnu/packages/chemistry.scm
@@ -3,6 +3,7 @@
;;; Copyright © 2018 Kei Kebreau <kkebreau@posteo.net>
;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -147,7 +148,7 @@ powerful plugin architecture.")
`(#:python ,python-2
;; No test suite
#:tests? #f))
- (home-page "http://dirac.cnrs-orleans.fr/DomainFinder")
+ (home-page "http://dirac.cnrs-orleans.fr/DomainFinder.html")
(synopsis "Analysis of dynamical domains in proteins")
(description "DomainFinder is an interactive program for the determination
and characterization of dynamical domains in proteins. It can infer dynamical
@@ -290,7 +291,7 @@ analogy is that InChI is the bar-code for chemistry and chemical structures.")
;; Show documentation as PDF
(("PREFERENCES\\['documentation_style'\\] = 'html'")
"PREFERENCES['documentation_style'] = 'pdf'") ))))))
- (home-page "http://dirac.cnrs-orleans.fr/nMOLDYN/")
+ (home-page "http://dirac.cnrs-orleans.fr/nMOLDYN.html")
(synopsis "Analysis software for Molecular Dynamics trajectories")
(description "nMOLDYN is an interactive analysis program for Molecular Dynamics
simulations. It is especially designed for the computation and decomposition of
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index b7438a323f..549d53dd7d 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -25,6 +25,7 @@
;;; Copyright © 2018, 2019 Pierre Neidhardt <mail@ambrevar.xyz>
;;; Copyright © 2019 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2019 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -410,7 +411,8 @@ compatible with bzip2 – both at file format and command line level.")
#:phases (modify-phases %standard-phases
(delete 'configure)) ; no configure script
#:make-flags (list (string-append "PREFIX=" %output))))
- (home-page "http://compression.ca/pbzip2/")
+ (home-page (string-append "https://web.archive.org/web/20180412020219/"
+ "http://compression.ca/pbzip2/"))
(synopsis "Parallel bzip2 implementation")
(description
"Pbzip2 is a parallel implementation of the bzip2 block-sorting file
@@ -813,7 +815,7 @@ time for compression ratio.")
("lzo" ,lzo)
("xz" ,xz)
("zlib" ,zlib)))
- (home-page "http://squashfs.sourceforge.net/")
+ (home-page "https://github.com/plougher/squashfs-tools")
(synopsis "Tools to create and extract squashfs file systems")
(description
"Squashfs is a highly compressed read-only file system for Linux. It uses
diff --git a/gnu/packages/coq.scm b/gnu/packages/coq.scm
index 3eba39e5d0..f883c2f690 100644
--- a/gnu/packages/coq.scm
+++ b/gnu/packages/coq.scm
@@ -3,6 +3,7 @@
;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019 Dan Frumin <dfrumin@cs.ru.nl>
;;; Copyright © 2020 Brett Gilio <brettg@gnu.org>
+;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -353,7 +354,7 @@ assistant.")
(string-append "COQLIB=" (assoc-ref outputs "out")
"/lib/coq/")
"install"))))))
- (home-page "https://math-comp.github.io/math-comp/")
+ (home-page "https://math-comp.github.io/")
(synopsis "Mathematical Components for Coq")
(description "Mathematical Components for Coq has its origins in the formal
proof of the Four Colour Theorem. Since then it has grown to cover many areas
diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm
index 8b32c3f0a9..dba9ec75f6 100644
--- a/gnu/packages/cpp.scm
+++ b/gnu/packages/cpp.scm
@@ -7,6 +7,7 @@
;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz>
;;; Copyright © 2019 Jan Wielkiewicz <tona_kosmicznego_smiecia@interia.pl>
;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz>
+;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -439,3 +440,47 @@ create fluid interpolations when animating position, scale, rotation, frames or
other values of screen objects, by setting their values as the tween starting
point and then, after each tween step, plugging back the result.")
(license license:expat)))
+
+(define-public abseil-cpp
+ (package
+ (name "abseil-cpp")
+ (version "20200225")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/abseil/abseil-cpp.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0wb04pszzrl39ny1pz9jvvq8lbbm355dd60jspcyqfwxnk6njgd1"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:configure-flags (list "-DBUILD_SHARED_LIBS=ON"
+ "-DABSL_RUN_TESTS=ON"
+ ;; Needed, else we get errors like:
+ ;;
+ ;; ld: CMakeFiles/absl_periodic_sampler_test.dir/internal/periodic_sampler_test.cc.o:
+ ;; undefined reference to symbol '_ZN7testing4Mock16UnregisterLockedEPNS_8internal25UntypedFunctionMockerBaseE'
+ ;; ld: /gnu/store/bxapb1f1l8frjpbjckk3zdxhmcig3xzk-googletest-1.10.0/lib/libgmock.so:
+ ;; error adding symbols: DSO missing from command line
+ ;; collect2: error: ld returned 1 exit status
+ "-DCMAKE_EXE_LINKER_FLAGS=-lgtest -lpthread -lgmock")
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'remove-gtest-check
+ ;; The CMakeLists fails to find our googletest for some reason, but
+ ;; it works nonetheless.
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ (("check_target\\(gtest\\)") "")
+ (("check_target\\(gtest_main\\)") "")
+ (("check_target\\(gmock\\)") "")))))))
+ (native-inputs
+ `(("googletest" ,googletest)))
+ (home-page "https://abseil.io")
+ (synopsis "Augmented C++ standard library")
+ (description "Abseil is a collection of C++ library code designed to
+augment the C++ standard library. The Abseil library code is collected from
+Google's C++ code base.")
+ (license license:asl2.0)))
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9e834415da..6c7c95dc68 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7180,13 +7180,13 @@ and coverage methods to tune the choice of threshold.")
(define-public r-ggformula
(package
(name "r-ggformula")
- (version "0.9.3")
+ (version "0.9.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggformula" version))
(sha256
- (base32 "1bpsfp9hx001r91pxfiwgxcn5vw5bl1gclb865wz6g9l0jqjfk2p"))))
+ (base32 "04vdhg1bbc1psrx9ggaphz7cx4fw5xsmhkqpqfcg2w4ba2bjy46f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggforce" ,r-ggforce)
@@ -7196,8 +7196,7 @@ and coverage methods to tune the choice of threshold.")
("r-mosaiccore" ,r-mosaiccore)
("r-rlang" ,r-rlang)
("r-stringr" ,r-stringr)
- ("r-tibble" ,r-tibble)
- ("r-tidyr" ,r-tidyr)))
+ ("r-tibble" ,r-tibble)))
(home-page "https://github.com/ProjectMOSAIC/ggformula/")
(synopsis "Formula interface for the @code{r-ggplot2}")
(description
@@ -8238,14 +8237,14 @@ Hothorn, Westfall, 2010, CRC Press).")
(define-public r-emmeans
(package
(name "r-emmeans")
- (version "1.4.4")
+ (version "1.4.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
- "0l1qj6x834fmcvqbj807p7yz7462df925vw91xvg50faqm19d41x"))))
+ "10fmvmd6q4zjr6b18hhc85mwrzv778qzj6lwl9kbs2fsfvsgw7mm"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
@@ -11986,14 +11985,14 @@ users of rARPACK are advised to switch to the RSpectra package.")
(define-public r-compositions
(package
(name "r-compositions")
- (version "1.40-3")
+ (version "1.40-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "compositions" version))
(sha256
(base32
- "103hbmibrf1n333pn4xpll1gqqsv4szms0n5gdq7zak31aar0bg4"))))
+ "0z40llyij3cc80ac1vzzrpykk6ysp89bn6dyyh40fbnc4anwx69a"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bayesm" ,r-bayesm)
@@ -19403,14 +19402,14 @@ analysis and natural language processing.")
(define-public r-spacyr
(package
(name "r-spacyr")
- (version "1.2")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "spacyr" version))
(sha256
(base32
- "1xsiz6zx89vs6ykrkkp011d8fz4ksdgnf5nyaq5ynjr6zv865vks"))))
+ "1b2ccgwsiqkvp7w37x8k7699c676q16vfrybkrfvyczyhki4s6nw"))))
(properties `((upstream-name . "spacyr")))
(build-system r-build-system)
(propagated-inputs
@@ -20136,20 +20135,22 @@ Latent regression models and plausible value imputation are also supported.")
(define-public r-erm
(package
(name "r-erm")
- (version "1.0-0")
+ (version "1.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "eRm" version))
(sha256
(base32
- "11p8j61arq1ih2qi33wf0442vcdbp3zvknzm5aknsifwl4mbzzly"))))
+ "0njqzznnhnkvalmhiq5yq1w7gwp2myki5cv61w42ydvd27hdyyg9"))))
(properties `((upstream-name . "eRm")))
(build-system r-build-system)
(propagated-inputs
- `(("r-lattice" ,r-lattice)
+ `(("r-colorspace" ,r-colorspace)
+ ("r-lattice" ,r-lattice)
("r-mass" ,r-mass)
- ("r-matrix" ,r-matrix)))
+ ("r-matrix" ,r-matrix)
+ ("r-psych" ,r-psych)))
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://cran.r-project.org/package=eRm")
(synopsis "Extended Rasch modeling")
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 1788e0d6df..98f80db89f 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -2284,13 +2284,13 @@ for ODBC.")
(define-public python-pyodbc
(package
(name "python-pyodbc")
- (version "4.0.27")
+ (version "4.0.30")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyodbc" version))
(sha256
- (base32 "1kd2i7hc1330cli72vawzby17c3039cqn1aba4i0zrjnpghjhmib"))
+ (base32 "0skjpraar6hcwsy82612bpj8nw016ncyvvq88j5syrikxgp5saw5"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system python-build-system)
(inputs
diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm
index 0628017b9a..534b64ef95 100644
--- a/gnu/packages/disk.scm
+++ b/gnu/packages/disk.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2015 Mathieu Lirzin <mthl@gnu.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2016, 2019 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
@@ -210,14 +210,14 @@ scheme.")
(define-public ddrescue
(package
(name "ddrescue")
- (version "1.24")
+ (version "1.25")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://gnu/ddrescue/ddrescue-"
version ".tar.lz"))
(sha256
- (base32 "11qh0bbzf00mfb4yq35gnv5m260k4d7q9ixklry6bqvhvvp3ypab"))))
+ (base32 "0qqh38izl5ppap9a5izf3hijh94k65s3zbfkczd4b7x04syqwlyf"))))
(build-system gnu-build-system)
(home-page "https://www.gnu.org/software/ddrescue/ddrescue.html")
(synopsis "Data recovery utility")
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 3e63847a87..0652ea15e6 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -248,7 +248,7 @@ with arguments to the field constructor.")
("python-setuptools-scm" ,python-setuptools-scm)))
(propagated-inputs
`(("python-pytest" ,python-pytest)))
- (home-page "http://pytest-django.readthedocs.org/")
+ (home-page "https://pytest-django.readthedocs.org/")
(synopsis "Django plugin for py.test")
(description "Pytest-django is a plugin for py.test that provides a set of
useful tools for testing Django applications and projects.")
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 6f31a30747..6bdfd7a640 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -60,6 +60,7 @@
;;; Copyright © 2020 Paul Garlick <pgarlick@tourbillion-technology.com>
;;; Copyright © 2020 Robert Smith <robertsmith@posteo.net>
;;; Copyright © 2020 Evan Straw <evan.straw99@gmail.com>
+;;; Copyright © 2020 Masaya Tojo <masaya@tojo.tokyo>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -17258,10 +17259,10 @@ leader key in vim), and much more.")
(license license:gpl3+))))
(define-public emacs-tldr
- (let ((commit "398b197c8d2238628b07e1b32d0f373876279f4c"))
+ (let ((commit "7203d1be3dcbf12131846ffe06601933fa874d74"))
(package
(name "emacs-tldr")
- (version (git-version "0" "0" commit))
+ (version (git-version "0" "1" commit))
(home-page "https://github.com/kuanyui/tldr.el")
(source (origin
(method git-fetch)
@@ -17270,9 +17271,11 @@ leader key in vim), and much more.")
(commit commit)))
(sha256
(base32
- "0iq7qlis6c6r2qkdpncrhh5vsihkhvy5x4y1y8cjb7zxkh62w33f"))
+ "1bw6la463l2yfm7rp76ga4makfy4kpxgwi7ni5gxk31w11g26ryk"))
(file-name (git-file-name name version))))
(build-system emacs-build-system)
+ (propagated-inputs
+ `(("emacs-request" ,emacs-request)))
(synopsis "Simplified and community-driven man pages for Emacs")
(description "@code{emacs-tldr} allows the user to access tldr pages
from within emacs. The @code{tldr} pages are a community effort to simplify
@@ -17844,25 +17847,26 @@ Later you can insert it into an Org buffer using the command
(define-public emacs-amx
(package
(name "emacs-amx")
- (version "3.2")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/DarwinAwardWinner/amx")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0bb8y1dmzyqkrb4mg6zndcsxppby3glridv2aap2pv05gv8kx7mj"))))
+ (version "3.3")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/DarwinAwardWinner/amx")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0ikjzs119g57cwh2v3jmy63lggqc0ib99q5gsl93slkk4y2ihavw"))))
(build-system emacs-build-system)
- (propagated-inputs `(("emacs-s" ,emacs-s)))
+ (propagated-inputs
+ `(("emacs-s" ,emacs-s)))
(home-page "https://github.com/DarwinAwardWinner/amx")
- (synopsis "Alternative interface for M-x")
+ (synopsis "Alternative M-x interface for Emacs")
(description "Amx is an alternative interface for M-x in Emacs. It
provides several enhancements over the ordinary
@code{execute-extended-command}, such as prioritizing your most-used commands
in the completion list and showing keyboard shortcuts, and it supports several
-completion systems for selecting commands, such as ido and ivy.")
+completion systems for selecting commands, such as Ido and Ivy.")
(license license:gpl3+)))
(define-public emacs-lorem-ipsum
@@ -21729,3 +21733,49 @@ supports generation of phonetic and numeric passwords.")
Separated Value) files. It follows the format as defined in RFC 4180 \"Common
Format and MIME Type for CSV Files\" (@url{http://tools.ietf.org/html/rfc4180}).")
(license license:gpl3+)))
+
+(define-public emacs-ddskk
+ ;; XXX: Upstream adds code names to their release tags, so version and code
+ ;; name below need to be updated together.
+ (let ((version "16.3")
+ (code-name "Kutomatsunai"))
+ (package
+ (name "emacs-ddskk")
+ (version version)
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/skk-dev/ddskk")
+ (commit (string-append "ddskk-" version "_" code-name))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0ln4x8f35z5y3kf9m718g223bn3lzcmw40jfjg2j5yi24ydf1wm9"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:modules ((guix build gnu-build-system)
+ (guix build utils)
+ (guix build emacs-utils))
+ #:imported-modules (,@%gnu-build-system-modules
+ (guix build emacs-utils))
+ #:test-target "test"
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'configure
+ (lambda* (#:key outputs #:allow-other-keys)
+ (make-file-writable "SKK-MK")
+ (emacs-substitute-variables "SKK-MK"
+ ("PREFIX" (assoc-ref outputs "out"))
+ ("LISPDIR" '(expand-file-name "/share/emacs/site-lisp" PREFIX))
+ ("SKK_PREFIX" "")
+ ("SKK_INFODIR" '(expand-file-name "info" PREFIX)))
+ (for-each make-file-writable (find-files "./doc"))
+ #t)))))
+ (native-inputs
+ `(("emacs-minimal" ,emacs-minimal)))
+ (home-page "https://github.com/skk-dev/ddskk")
+ (synopsis "Simple Kana to Kanji conversion program")
+ (description
+ "Daredevil SKK is a version of @acronym{SKK, Simple Kana to Kanji
+conversion program}, a Japanese input method on Emacs.")
+ (license license:gpl2+))))
diff --git a/gnu/packages/enchant.scm b/gnu/packages/enchant.scm
index 25825997bb..ff4fc03363 100644
--- a/gnu/packages/enchant.scm
+++ b/gnu/packages/enchant.scm
@@ -36,7 +36,7 @@
(define-public enchant
(package
(name "enchant")
- (version "2.2.7")
+ (version "2.2.8")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/AbiWord/enchant/releases"
@@ -44,7 +44,7 @@
version ".tar.gz"))
(sha256
(base32
- "029smcna98hllgkm2gy94qa7qphxs4xaa8cdbg5kaaw16mhrf8hv"))))
+ "0m9m564qqwbssvvf7y3dlz1yxzqsjiqy1yd2zsmb3l0d7y2y5df7"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--disable-static"
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 8d39730a7b..d802feb1da 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -11,6 +11,7 @@
;;; Copyright © 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2019 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -45,6 +46,7 @@
#:use-module (gnu packages glib)
#:use-module (gnu packages gperf)
#:use-module (gnu packages xorg)
+ #:use-module (gnu packages fribidi)
#:use-module (gnu packages gtk)
#:use-module (gnu packages xml)
#:use-module (gnu packages sqlite)
@@ -678,7 +680,7 @@ files. UFO is a file format that stores fonts source files.")
(propagated-inputs
`(("python2-fonttools" ,python2-fonttools)
("python2-ufolib" ,python2-ufolib)))
- (home-page "https://pypi.python.org/pypi/defcon")
+ (home-page "https://pypi.org/project/defcon/")
(synopsis "Flexible objects for representing @acronym{UFO, unified font object} data")
(description
"Defcon is a set of @acronym{UFO, unified font object} based objects
@@ -836,3 +838,37 @@ work well with other GTK+ desktop environments.")
samples that show coverage of the font and are similar in appearance to
Unicode Charts. It was developed for use with DejaVu Fonts project.")
(license license:gpl3+)))
+
+(define-public libraqm
+ (package
+ (name "libraqm")
+ (version "0.7.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/HOST-Oman/libraqm/"
+ "releases/download/v" version "/"
+ "raqm-" version ".tar.gz"))
+ (sha256
+ (base32 "0hgry3fj2y3qaq2fnmdgd93ixkk3ns5jds4vglkiv2jfvpn7b1g2"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags (list "--disable-static")))
+ (native-inputs
+ `(("gtk-doc" ,gtk-doc)
+ ("pkg-config" ,pkg-config)
+ ("python" ,python-wrapper)))
+ (inputs
+ `(("freetype" ,freetype)
+ ("fribidi" ,fribidi)
+ ("harfbuzz" ,harfbuzz)))
+ (home-page "https://github.com/HOST-Oman/libraqm")
+ (synopsis "Library for complex text layout")
+ (description
+ "Raqm is a small library that encapsulates the logic for complex text
+layout and provides a convenient API.
+
+It currently provides bidirectional text support (using FriBiDi),
+shaping (using HarfBuzz), and proper script itemization. As a result, Raqm
+can support most writing systems covered by Unicode.")
+ (license license:expat)))
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index d6f8abebdd..322e309591 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -5941,7 +5941,7 @@ affect gameplay).")
(package
(inherit chocolate-doom)
(name "crispy-doom")
- (version "5.6.4")
+ (version "5.7.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -5949,7 +5949,7 @@ affect gameplay).")
(commit (string-append "crispy-doom-" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1ls4v2kpb7vi7xji5yqbmyc5lfkz497h1vvj9w86wkrw8k59hlg2"))))
+ (base32 "1gqivy4pxasy7phyznixsagylf9f70bk33b0knpfzzlks6cc6zzj"))))
(native-inputs
(append
(package-native-inputs chocolate-doom)
diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm
index 29b9d34569..ead50bb1dc 100644
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2014, 2015, 2018 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014, 2015, 2016, 2017, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2017, 2018, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Carlos Sánchez de La Lama <csanchezdll@gmail.com>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
@@ -509,14 +509,14 @@ It also includes runtime support libraries for these languages.")))
(define-public gcc-8
(package
(inherit gcc-7)
- (version "8.3.0")
+ (version "8.4.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/gcc/gcc-"
version "/gcc-" version ".tar.xz"))
(sha256
(base32
- "0b3xv411xhlnjmin2979nxcbnidgvzqdf4nbhix99x60dkzavfk4"))
+ "1m1d3gfix56w4aq8myazzfffkl8bqcrx4jhhapnjf7qfs596w2p3"))
(patches (search-patches "gcc-8-strmov-store-file-names.patch"
"gcc-5.0-libvtv-runpath.patch"))))))
diff --git a/gnu/packages/glib.scm b/gnu/packages/glib.scm
index 72d5ea0bdd..c98d8c18f5 100644
--- a/gnu/packages/glib.scm
+++ b/gnu/packages/glib.scm
@@ -670,7 +670,7 @@ useful for C++.")
(arguments
`(#:tests? #f ;segfaults during tests
#:configure-flags '("LIBS=-lcairo-gobject")))
- (home-page "https://pypi.python.org/pypi/PyGObject")
+ (home-page "https://pypi.org/project/PyGObject/")
(synopsis "Python bindings for GObject")
(description
"Python bindings for GLib, GObject, and GIO.")
@@ -898,16 +898,15 @@ programming language. It also contains the utility
(define-public appstream-glib
(package
(name "appstream-glib")
- (version "0.7.16")
+ (version "0.7.17")
(source (origin
(method url-fetch)
(uri (string-append "https://people.freedesktop.org/~hughsient/"
"appstream-glib/releases/"
"appstream-glib-" version ".tar.xz"))
- (patches (search-patches "appstream-glib-2020.patch"))
(sha256
(base32
- "14jr1psx5kxywdprgbqn79w309yz8lrqlsq7288hfrf87gbr1wh4"))))
+ "0jg58m1p5xfrh8zkpqhhg00nqs727z5i1qy6sb0a3vyc98fyk9vw"))))
(build-system meson-build-system)
(native-inputs
`(("gettext" ,gettext-minimal)
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 0cd39f9104..c802164188 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -3671,7 +3671,7 @@ libxml to ease remote use of the RESTful API.")
(define-public libsoup
(package
(name "libsoup")
- (version "2.68.3")
+ (version "2.68.4")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/libsoup/"
@@ -3679,7 +3679,7 @@ libxml to ease remote use of the RESTful API.")
"libsoup-" version ".tar.xz"))
(sha256
(base32
- "1yxs0ax4rq3g0lgkbv7mz497rqj16iyyizddyc13gzxh6n7b0jsk"))))
+ "151j5dc84gbl6a917pxvd0b372lw5za48n63lyv6llfc48lv2l1d"))))
(build-system meson-build-system)
(outputs '("out" "doc"))
(arguments
@@ -5688,7 +5688,7 @@ wraps things up in a developer-friendly way.")
(define-public libgee
(package
(name "libgee")
- (version "0.20.2")
+ (version "0.20.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/libgee/"
@@ -5696,7 +5696,7 @@ wraps things up in a developer-friendly way.")
"libgee-" version ".tar.xz"))
(sha256
(base32
- "0g1mhl7nidg82v4cikkk8dakzc18hg7wv0dsf2pbyijzfm5mq0wy"))))
+ "1pm525wm11dhwz24m8bpcln9547lmrigl6cxf3qsbg4cr3pyvdfh"))))
(build-system gnu-build-system)
(arguments
`(#:phases
diff --git a/gnu/packages/gps.scm b/gnu/packages/gps.scm
index 8f23be05e6..ac8deddad5 100644
--- a/gnu/packages/gps.scm
+++ b/gnu/packages/gps.scm
@@ -3,6 +3,7 @@
;;; Copyright © 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2020 Guillaume Le Vaillant <glv@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -24,17 +25,23 @@
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system scons)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
#:use-module (gnu packages base)
- #:use-module (gnu packages pkg-config)
#:use-module (gnu packages compression)
#:use-module (gnu packages docbook)
- #:use-module (gnu packages image)
- #:use-module (gnu packages xml)
+ #:use-module (gnu packages glib)
#:use-module (gnu packages gtk)
+ #:use-module (gnu packages image)
+ #:use-module (gnu packages libusb)
+ #:use-module (gnu packages linux)
+ #:use-module (gnu packages ncurses)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python)
#:use-module (gnu packages qt)
- #:use-module (gnu packages sqlite))
+ #:use-module (gnu packages sqlite)
+ #:use-module (gnu packages xml))
(define-public gpsbabel
(package
@@ -204,3 +211,84 @@ coordinates as well as partial support for adjustments in global coordinate syst
"GPXSee is a Qt-based GPS log file viewer and analyzer that supports
all common GPS log file formats.")
(license license:gpl3)))
+
+(define-public gpsd
+ (package
+ (name "gpsd")
+ (version "3.19")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://download-mirror.savannah.gnu.org"
+ "/releases/gpsd/gpsd-" version ".tar.gz"))
+ (sha256
+ (base32 "0faz2mvk82hi7ispxxih07lhpyz5dazs4gcknym9piiabga29p97"))))
+ (build-system scons-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("python" ,python)))
+ (inputs
+ `(("bluez" ,bluez)
+ ("dbus" ,dbus)
+ ("libcap" ,libcap)
+ ("libusb" ,libusb)
+ ("ncurses" ,ncurses)))
+ (arguments
+ `(#:scons-flags (list (string-append "prefix=" %output)
+ ;; TODO: Install python bindings.
+ "python=no")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-paths
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((python3 (string-append (assoc-ref inputs "python")
+ "/bin/python3")))
+ (substitute* '("contrib/gpsData.py"
+ "contrib/ntpshmviz"
+ "contrib/skyview2svg"
+ "contrib/webgps.py"
+ "devtools/ais.py"
+ "devtools/aivdmtable"
+ "devtools/cycle_analyzer"
+ "devtools/flocktest"
+ "devtools/identify_failing_build_options.py"
+ "devtools/regress-builder"
+ "devtools/regressdiff"
+ "devtools/sizes"
+ "devtools/striplog"
+ "devtools/tablegen.py"
+ "devtools/test_json_validity.py"
+ "devtools/uninstall_cleanup.py"
+ "gegps"
+ "gps/gps.py"
+ "gpscat"
+ "gpsfake"
+ "gpsprof"
+ "jsongen.py"
+ "leapsecond.py"
+ "maskaudit.py"
+ "test_maidenhead.py"
+ "test_misc.py"
+ "test_xgps_deps.py"
+ "ubxtool"
+ "valgrind-audit.py"
+ "xgps"
+ "xgpsspeed"
+ "zerk")
+ (("/usr/bin/python") python3)
+ (("/usr/bin/env python") python3)))
+ #t))
+ (add-after 'fix-paths 'fix-build
+ (lambda _
+ (substitute* "SConstruct"
+ (("'PATH'")
+ "'PATH','CPATH','LIBRARY_PATH'"))
+ #t)))))
+ (synopsis "GPS service daemon")
+ (description
+ "@code{gpsd} is a service daemon that monitors one or more GPSes or AIS
+receivers attached to a host computer through serial or USB ports, making all
+data on the location/course/velocity of the sensors available to be queried on
+TCP port 2947 of the host computer.")
+ (home-page "https://gpsd.gitlab.io/gpsd/")
+ (license license:bsd-2)))
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 63eb36fd7d..ab2bf1daf0 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -119,7 +119,7 @@ more.")
(native-inputs
`(("pkg-config" ,pkg-config)
("python-pytest" ,python-pytest)))
- (home-page "http://pypi.python.org/pypi/python-igraph")
+ (home-page "https://pypi.org/project/python-igraph/")
(synopsis "Python bindings for the igraph network analysis library")))
(define-public r-igraph
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index 365fe1a113..c4f88caa88 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -308,7 +308,7 @@ structure and layout algorithms.")
("gtk+" ,gtk+)
("python-pycairo" ,python-pycairo)
("python-pygobject" ,python-pygobject)))
- (home-page "https://pypi.python.org/pypi/xdot")
+ (home-page "https://pypi.org/project/xdot/")
(synopsis "Interactive viewer for graphviz dot files")
(description "Xdot is an interactive viewer for graphs written in
@code{graphviz}’s dot language. Internally, it uses the xdot output format as
diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm
index 292a2836cc..05b4a52d39 100644
--- a/gnu/packages/gtk.scm
+++ b/gnu/packages/gtk.scm
@@ -15,7 +15,7 @@
;;; Copyright © 2016 Patrick Hetu <patrick.hetu@auf.org>
;;; Copyright © 2016 ng0 <ng0@n0.is>
;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
-;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com>
;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
@@ -1446,7 +1446,7 @@ and routines to assist in editing internationalized text.")
(define-public girara
(package
(name "girara")
- (version "0.3.3")
+ (version "0.3.4")
(source
(origin
(method git-fetch)
@@ -1455,7 +1455,7 @@ and routines to assist in editing internationalized text.")
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "0q0yfv2777s72p473lw0ll435n7vz4v204cmp9naq8am7a6i6avn"))))
+ (base32 "08rpw9hkaprm4r853xy1d35i2af1pji8c3mzzl01mmwmyr9p0x8k"))))
(native-inputs `(("pkg-config" ,pkg-config)
("check" ,check)
("gettext" ,gettext-minimal)
diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm
index 1062456885..b71b0178d6 100644
--- a/gnu/packages/guile-xyz.scm
+++ b/gnu/packages/guile-xyz.scm
@@ -17,7 +17,7 @@
;;; Copyright © 2017 ng0 <ng0@n0.is>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
-;;; Copyright © 2018, 2019 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2018, 2019, 2020 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2019 swedebugia <swedebugia@riseup.net>
@@ -80,8 +80,10 @@
#:use-module (gnu packages python)
#:use-module (gnu packages readline)
#:use-module (gnu packages sdl)
+ #:use-module (gnu packages search)
#:use-module (gnu packages slang)
#:use-module (gnu packages sqlite)
+ #:use-module (gnu packages swig)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages tls)
@@ -3096,3 +3098,49 @@ currently a re-implementation of the lentes library for Clojure. Lenses
provide composable procedures, which can be used to focus, apply functions
over, or update a value in arbitrary data structures.")
(license license:gpl3+))))
+
+(define-public guile-xapian
+ (let ((commit "ede26b808188eb4d14c6b4181c933dfc09c0a22e")
+ (revision "0"))
+ (package
+ (name "guile-xapian")
+ (version (git-version "0" revision commit))
+ (home-page "https://git.systemreboot.net/guile-xapian")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference (url home-page)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "07a9fmqi3pm6mbbpzi01mjwrqwnljs2rnc3603sq49dz4lf663gb"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ; to prevent guild warnings
+ (inputs
+ `(("guile" ,guile-2.2)
+ ("xapian" ,xapian)
+ ("zlib" ,zlib)))
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("autoconf-archive" ,autoconf-archive)
+ ("automake" ,automake)
+ ("libtool" ,libtool)
+ ("pkg-config" ,pkg-config)
+ ("swig" ,swig)))
+ (synopsis "Guile bindings for Xapian")
+ (description "@code{guile-xapian} provides Guile bindings for Xapian, a
+search engine library. Xapian is a highly adaptable toolkit which allows
+developers to easily add advanced indexing and search facilities to their own
+applications. It has built-in support for several families of weighting
+models and also supports a rich set of boolean query operators.")
+ (license license:gpl2+))))
+
+(define-public guile3.0-xapian
+ (package
+ (inherit guile-xapian)
+ (name "guile3.0-xapian")
+ (inputs
+ `(("guile" ,guile-next)
+ ,@(alist-delete "guile" (package-inputs guile-xapian))))))
diff --git a/gnu/packages/ibus.scm b/gnu/packages/ibus.scm
index c0766c06bd..12a8d6758f 100644
--- a/gnu/packages/ibus.scm
+++ b/gnu/packages/ibus.scm
@@ -59,7 +59,7 @@
(define-public ibus
(package
(name "ibus")
- (version "1.5.21")
+ (version "1.5.22")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/ibus/ibus/"
@@ -67,7 +67,7 @@
version "/ibus-" version ".tar.gz"))
(sha256
(base32
- "1fd2d1jqpp1nn74x04zcilhhab0zar82n0kg614rma6n43kfbhdd"))))
+ "0jmy2w01phpmqnjnfnak7nvfna57mpgfnl87jwc4iai8ijjynw41"))))
(build-system glib-or-gtk-build-system)
(arguments
`(#:tests? #f ; tests fail because there's no connection to dbus
diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index a0b5776807..5229eeda06 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -2353,6 +2353,12 @@ new Date();"))
(string-join (string-split version #\.) "u")
"-ga"))))
(file-name (string-append name "-" version "-checkout"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; Delete included gradle jar
+ (delete-file-recursively "gradle/wrapper")
+ #t))
(sha256
(base32
"0yg38mwpivswccv9n96k06x3iv82i4px1a9xg9l8dswzwmfj259f"))))
diff --git a/gnu/packages/kodi.scm b/gnu/packages/kodi.scm
index 23afd138a3..2831d3d842 100644
--- a/gnu/packages/kodi.scm
+++ b/gnu/packages/kodi.scm
@@ -269,7 +269,7 @@ alternatives. In compilers, this can reduce the cascade of secondary errors.")
(define-public kodi
(package
(name "kodi")
- (version "18.4")
+ (version "18.6")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -278,7 +278,7 @@ alternatives. In compilers, this can reduce the cascade of secondary errors.")
(file-name (git-file-name name version))
(sha256
(base32
- "1m0295czxabdcqyqf5m94av9d88pzhnzjvyfs1q07xqq82h313p7"))
+ "0rwymipn5hljy5xrslzmrljmj6f9wb191wi7gjw20wl6sv44d0bk"))
(patches (search-patches "kodi-skip-test-449.patch"
"kodi-increase-test-timeout.patch"
"kodi-set-libcurl-ssl-parameters.patch"))
diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index d45f0ede90..2de9b84a1b 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -3008,7 +3008,7 @@ is a library for creating graphical user interfaces.")
(sbcl-package->cl-source-package sbcl-cl-cffi-gtk))
(define-public sbcl-cl-webkit
- (let ((commit "cd2a9008e0c152e54755e8a7f07b050fe36bab31"))
+ (let ((commit "79ad41996a1bd7fc8e53fe8d168e8f2030603b14"))
(package
(name "sbcl-cl-webkit")
(version (git-version "2.4" "1" commit))
@@ -3016,12 +3016,12 @@ is a library for creating graphical user interfaces.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/jmercouris/cl-webkit")
+ (url "https://github.com/joachifm/cl-webkit")
(commit commit)))
(file-name (git-file-name "cl-webkit" version))
(sha256
(base32
- "0f5lyn9i7xrn3g1bddga377mcbawkbxydijpg389q4n04gqj0vwf"))))
+ "1gxvmxmss5k79v2ccigx92q46zbydxh9r7plnnqh8na348pffgcs"))))
(build-system asdf-build-system/sbcl)
(inputs
`(("cffi" ,sbcl-cffi)
@@ -3038,7 +3038,7 @@ is a library for creating graphical user interfaces.")
(("libwebkit2gtk" all)
(string-append
(assoc-ref inputs "webkitgtk") "/lib/" all))))))))
- (home-page "https://github.com/jmercouris/cl-webkit")
+ (home-page "https://github.com/joachifm/cl-webkit")
(synopsis "Binding to WebKitGTK+ for Common Lisp")
(description
"@command{cl-webkit} is a binding to WebKitGTK+ for Common Lisp,
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index cab84a520b..a990ffc45e 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -34,6 +34,7 @@
;;; Copyright © 2019 Steve Sprang <scs@stevesprang.com>
;;; Copyright © 2019 Robert Smith <robertsmith@posteo.net>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
+;;; Copyright © 2020 Felix Gruber <felgru@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -3405,16 +3406,18 @@ Fresnel integrals, and similar related functions as well.")
(define-public suitesparse
(package
(name "suitesparse")
- (version "4.5.5")
+ (version "5.7.1")
(source
(origin
- (method url-fetch)
- (uri (string-append
- "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-"
- version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/DrTimothyAldenDavis/SuiteSparse.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "1dnr6pmjzc2qmbkmb4shigx1l74ilf6abn7svyd6brxgvph8vadr"))
+ "174p3l78kv9gaa0i5hflyai2ydwnjzh34k9938sl4aa3li0543s8"))
+ (patches (search-patches "suitesparse-mongoose-cmake.patch"))
(modules '((guix build utils)))
(snippet
;; Remove bundled metis source
@@ -3429,6 +3432,14 @@ Fresnel integrals, and similar related functions as well.")
"BLAS=-lblas"
"TBB=-ltbb"
"MY_METIS_LIB=-lmetis"
+ ;; Flags for cmake (required to build GraphBLAS and Mongoose)
+ (string-append "CMAKE_OPTIONS=-DCMAKE_INSTALL_PREFIX="
+ (assoc-ref %outputs "out")
+ " -DCMAKE_VERBOSE_MAKEFILE=ON"
+ " -DCMAKE_C_FLAGS_RELEASE=\"$(CFLAGS) $(CPPFLAGS)\""
+ " -DCMAKE_CXX_FLAGS_RELEASE=\"$(CXXFLAGS) $(CPPFLAGS)\""
+ " -DCMAKE_SKIP_RPATH=TRUE"
+ " -DCMAKE_BUILD_TYPE=Release")
(string-append "INSTALL_LIB="
(assoc-ref %outputs "out") "/lib")
(string-append "INSTALL_INCLUDE="
@@ -3441,6 +3452,9 @@ Fresnel integrals, and similar related functions as well.")
`(("tbb" ,tbb)
("lapack" ,lapack)
("metis" ,metis)))
+ (native-inputs
+ `(("cmake" ,cmake)
+ ("m4" ,m4)))
(home-page "http://faculty.cse.tamu.edu/davis/suitesparse.html")
(synopsis "Suite of sparse matrix software")
(description
diff --git a/gnu/packages/patches/appstream-glib-2020.patch b/gnu/packages/patches/appstream-glib-2020.patch
deleted file mode 100644
index ab8a4bbdee..0000000000
--- a/gnu/packages/patches/appstream-glib-2020.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-2020 is no longer the future.
-
-Taken from upstream:
-https://github.com/hughsie/appstream-glib/commit/953c8e529d7291e60a95e580967ed79ce2c9ccf0
-
-diff --git a/data/tests/broken.appdata.xml b/data/tests/broken.appdata.xml
-index f7a5386e..cf80f5b4 100644
---- a/data/tests/broken.appdata.xml
-+++ b/data/tests/broken.appdata.xml
-@@ -40,7 +40,7 @@
- <p>This is a duplicate release on the same day!</p>
- </description>
- </release>
-- <release date="2020-01-01" version="0.6.2">
-+ <release date="2050-01-01" version="0.6.2">
- <description>
- <p>This is a release in the future!</p>
- </description>
-diff --git a/libappstream-glib/as-app-validate.c b/libappstream-glib/as-app-validate.c
-index c1103ace..f50e4e41 100644
---- a/libappstream-glib/as-app-validate.c
-+++ b/libappstream-glib/as-app-validate.c
-@@ -864,7 +864,7 @@ as_app_validate_release (AsApp *app,
- AS_PROBLEM_KIND_ATTRIBUTE_MISSING,
- "<release> has no timestamp");
- }
-- if (timestamp > 20120101 && timestamp < 20251231) {
-+ if (timestamp > 20120101 && timestamp < 20351231) {
- ai_app_validate_add (helper,
- AS_PROBLEM_KIND_ATTRIBUTE_INVALID,
- "<release> timestamp should be a UNIX time");
diff --git a/gnu/packages/patches/ceph-boost-compat.patch b/gnu/packages/patches/ceph-boost-compat.patch
deleted file mode 100644
index b3df659d6b..0000000000
--- a/gnu/packages/patches/ceph-boost-compat.patch
+++ /dev/null
@@ -1,81 +0,0 @@
-Fix compatibility with Boost 1.70.
-
-Adapted for 14.2.5 from these upstream commits:
-https://github.com/ceph/ceph/commit/064f142746ae97f54865069cdacf5aae2b1b14f6
-https://github.com/ceph/ceph/commit/f1651b8c509d60787d10c4115e29fecfd2da237c
-
-diff --git a/src/rgw/rgw_asio_frontend.cc b/src/rgw/rgw_asio_frontend.cc
---- a/src/rgw/rgw_asio_frontend.cc
-+++ b/src/rgw/rgw_asio_frontend.cc
-@@ -83,7 +83,8 @@
- using SharedMutex = ceph::async::SharedMutex<boost::asio::io_context::executor_type>;
-
- template <typename Stream>
--void handle_connection(RGWProcessEnv& env, Stream& stream,
-+void handle_connection(boost::asio::io_context& context,
-+ RGWProcessEnv& env, Stream& stream,
- parse_buffer& buffer, bool is_ssl,
- SharedMutex& pause_mutex,
- rgw::dmclock::Scheduler *scheduler,
-@@ -160,7 +161,7 @@
- rgw::io::add_conlen_controlling(
- &real_client))));
- RGWRestfulIO client(cct, &real_client_io);
-- auto y = optional_yield{socket.get_io_context(), yield};
-+ auto y = optional_yield{context, yield};
- process_request(env.store, env.rest, &req, env.uri_prefix,
- *env.auth_registry, &client, env.olog, y, scheduler);
- }
-@@ -604,7 +605,7 @@
- return;
- }
- buffer->consume(bytes);
-- handle_connection(env, stream, *buffer, true, pause_mutex,
-+ handle_connection(context, env, stream, *buffer, true, pause_mutex,
- scheduler.get(), ec, yield);
- if (!ec) {
- // ssl shutdown (ignoring errors)
-@@ -622,7 +623,7 @@
- auto c = connections.add(conn);
- auto buffer = std::make_unique<parse_buffer>();
- boost::system::error_code ec;
-- handle_connection(env, s, *buffer, false, pause_mutex,
-+ handle_connection(context, env, s, *buffer, false, pause_mutex,
- scheduler.get(), ec, yield);
- s.shutdown(tcp::socket::shutdown_both, ec);
- });
-diff --git a/src/rgw/rgw_dmclock_async_scheduler.h b/src/rgw/rgw_dmclock_async_scheduler.h
---- a/src/rgw/rgw_dmclock_async_scheduler.h
-+++ b/src/rgw/rgw_dmclock_async_scheduler.h
-@@ -82,7 +82,12 @@ class AsyncScheduler : public md_config_obs_t, public Scheduler {
- using Completion = async::Completion<Signature, async::AsBase<Request>>;
-
- using Clock = ceph::coarse_real_clock;
-+#if BOOST_VERSION < 107000
- using Timer = boost::asio::basic_waitable_timer<Clock>;
-+#else
-+ using Timer = boost::asio::basic_waitable_timer<Clock,
-+ boost::asio::wait_traits<Clock>, executor_type>;
-+#endif
- Timer timer; //< timer for the next scheduled request
-
- CephContext *const cct;
-diff --git a/src/rgw/rgw_reshard.h b/src/rgw/rgw_reshard.h
---- a/src/rgw/rgw_reshard.h
-+++ b/src/rgw/rgw_reshard.h
-@@ -183,7 +183,14 @@ class RGWReshardWait {
- ceph::condition_variable cond;
-
- struct Waiter : boost::intrusive::list_base_hook<> {
-- boost::asio::basic_waitable_timer<Clock> timer;
-+#if BOOST_VERSION < 107000
-+ using Timer = boost::asio::basic_waitable_timer<Clock>;
-+#else
-+ using Executor = boost::asio::io_context::executor_type;
-+ using Timer = boost::asio::basic_waitable_timer<Clock,
-+ boost::asio::wait_traits<Clock>, Executor>;
-+#endif
-+ Timer timer;
- explicit Waiter(boost::asio::io_context& ioc) : timer(ioc) {}
- };
- boost::intrusive::list<Waiter> waiters;
diff --git a/gnu/packages/patches/ceph-volume-respect-PATH.patch b/gnu/packages/patches/ceph-volume-respect-PATH.patch
deleted file mode 100644
index 08a9a15ddd..0000000000
--- a/gnu/packages/patches/ceph-volume-respect-PATH.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-Look for required tools in $PATH instead of just a handful locations.
-
-diff --git a/src/ceph-volume/ceph_volume/util/system.py b/src/ceph-volume/ceph_volume/util/system.py
-index b637f023a4..14516e1c65 100644
---- a/src/ceph-volume/ceph_volume/util/system.py
-+++ b/src/ceph-volume/ceph_volume/util/system.py
-@@ -33,14 +33,7 @@ def generate_uuid():
-
- def which(executable):
- """find the location of an executable"""
-- locations = (
-- '/usr/local/bin',
-- '/bin',
-- '/usr/bin',
-- '/usr/local/sbin',
-- '/usr/sbin',
-- '/sbin',
-- )
-+ locations = os.getenv('PATH').split(':')
-
- for location in locations:
- executable_path = os.path.join(location, executable)
diff --git a/gnu/packages/patches/libgit2-avoid-python.patch b/gnu/packages/patches/libgit2-avoid-python.patch
deleted file mode 100644
index b2e5141563..0000000000
--- a/gnu/packages/patches/libgit2-avoid-python.patch
+++ /dev/null
@@ -1,322 +0,0 @@
-This provides a Guile reimplementation of clar's "generate.py".
-It makes it possible for us to remove Python from libgit2's build-time
-dependencies.
-libgit2 is used in order to fetch a lot of sources for guix packages.
-Both Python2 and Python3 builds acted up in the past.
-Hence this patch which makes the number of libgit2 dependencies very
-small.
-The reimplementation tries to keep as close as possible to the original
-in both structure and runtime effect. Some things are thus overly
-convoluted just to make them the same as in the original.
-
-Both implementations basically do:
-
-grep -r 'test_.*__.*' . > clar.suite
-
-It is important that the directory traversal order of the original and
-the reimplementation stay the same.
-
-diff -ruN orig/libgit2-0.27.7/tests/CMakeLists.txt libgit2-0.27.7/tests/CMakeLists.txt
---- orig/libgit2-0.27.7/tests/CMakeLists.txt 1970-01-01 01:00:00.000000000 +0100
-+++ libgit2-0.27.7/tests/CMakeLists.txt 2019-03-04 11:13:06.640118979 +0100
-@@ -1,10 +1,3 @@
--FIND_PACKAGE(PythonInterp)
--
--IF(NOT PYTHONINTERP_FOUND)
-- MESSAGE(FATAL_ERROR "Could not find a python interpeter, which is needed to build the tests. "
-- "Make sure python is available, or pass -DBUILD_CLAR=OFF to skip building the tests")
--ENDIF()
--
- SET(CLAR_FIXTURES "${CMAKE_CURRENT_SOURCE_DIR}/resources/")
- SET(CLAR_PATH "${CMAKE_CURRENT_SOURCE_DIR}")
- ADD_DEFINITIONS(-DCLAR_FIXTURE_PATH=\"${CLAR_FIXTURES}\")
-@@ -21,7 +14,7 @@
-
- ADD_CUSTOM_COMMAND(
- OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/clar.suite
-- COMMAND ${PYTHON_EXECUTABLE} generate.py -o "${CMAKE_CURRENT_BINARY_DIR}" -f -xonline -xstress -xperf .
-+ COMMAND guile generate.scm -o "${CMAKE_CURRENT_BINARY_DIR}" -f -x online -x stress -x perf .
- DEPENDS ${SRC_TEST}
- WORKING_DIRECTORY ${CLAR_PATH}
- )
-diff -ruN orig/libgit2-0.27.7/tests/generate.scm libgit2-0.27.7/tests/generate.scm
---- orig/libgit2-0.27.7/tests/generate.scm 1970-01-01 01:00:00.000000000 +0100
-+++ libgit2-0.27.7/tests/generate.scm 2019-03-04 12:18:00.688040975 +0100
-@@ -0,0 +1,277 @@
-+;; -*- geiser-scheme-implementation: guile -*-
-+
-+;;; Implementation: Danny Milosavljevic <dannym@scratchpost.org>
-+;;; Based on: Implementation in Python by Vicent Marti.
-+;;; License: ISC, like the original generate.py in clar.
-+
-+(use-modules (ice-9 ftw))
-+(use-modules (ice-9 regex))
-+(use-modules (ice-9 getopt-long))
-+(use-modules (ice-9 rdelim))
-+(use-modules (ice-9 match))
-+(use-modules (ice-9 textual-ports))
-+(use-modules (srfi srfi-1))
-+
-+(define (render-callback cb)
-+ (if cb
-+ (string-append " { \"" (assoc-ref cb "short-name") "\", &"
-+ (assoc-ref cb "symbol") " }")
-+ " { NULL, NULL }"))
-+
-+(define (replace needle replacement haystack)
-+ "Replace all occurences of NEEDLE in HAYSTACK by REPLACEMENT.
-+NEEDLE is a regular expression."
-+ (regexp-substitute/global #f needle haystack 'pre replacement 'post))
-+
-+(define (skip-comments* text)
-+ (call-with-input-string
-+ text
-+ (lambda (port)
-+ (let loop ((result '())
-+ (section #f))
-+ (define (consume-char)
-+ (cons (read-char port) result))
-+ (define (skip-char)
-+ (read-char port)
-+ result)
-+ (match section
-+ (#f
-+ (match (peek-char port)
-+ (#\/ (loop (consume-char) 'almost-in-block-comment))
-+ (#\" (loop (consume-char) 'in-string-literal))
-+ (#\' (loop (consume-char) 'in-character-literal))
-+ ((? eof-object?) result)
-+ (_ (loop (consume-char) section))))
-+ ('almost-in-block-comment
-+ (match (peek-char port)
-+ (#\* (loop (consume-char) 'in-block-comment))
-+ (#\/ (loop (consume-char) 'in-line-comment))
-+ ((? eof-object?) result)
-+ (_ (loop (consume-char) #f))))
-+ ('in-line-comment
-+ (match (peek-char port)
-+ (#\newline (loop (consume-char) #f))
-+ ((? eof-object?) result)
-+ (_ (loop (skip-char) section))))
-+ ('in-block-comment
-+ (match (peek-char port)
-+ (#\* (loop (skip-char) 'almost-out-of-block-comment))
-+ ((? eof-object?) result)
-+ (_ (loop (skip-char) section))))
-+ ('almost-out-of-block-comment
-+ (match (peek-char port)
-+ (#\/ (loop (cons (read-char port) (cons #\* result)) #f))
-+ (#\* (loop (skip-char) 'almost-out-of-block-comment))
-+ ((? eof-object?) result)
-+ (_ (loop (skip-char) 'in-block-comment))))
-+ ('in-string-literal
-+ (match (peek-char port)
-+ (#\\ (loop (consume-char) 'in-string-literal-escape))
-+ (#\" (loop (consume-char) #f))
-+ ((? eof-object?) result)
-+ (_ (loop (consume-char) section))))
-+ ('in-string-literal-escape
-+ (match (peek-char port)
-+ ((? eof-object?) result)
-+ (_ (loop (consume-char) 'in-string-literal))))
-+ ('in-character-literal
-+ (match (peek-char port)
-+ (#\\ (loop (consume-char) 'in-character-literal-escape))
-+ (#\' (loop (consume-char) #f))
-+ ((? eof-object?) result)
-+ (_ (loop (consume-char) section))))
-+ ('in-character-literal-escape
-+ (match (peek-char port)
-+ ((? eof-object?) result)
-+ (_ (loop (consume-char) 'in-character-literal)))))))))
-+
-+(define (skip-comments text)
-+ (list->string (reverse (skip-comments* text))))
-+
-+(define (maybe-only items)
-+ (match items
-+ ((a) a)
-+ (_ #f)))
-+
-+(define (Module name path excludes)
-+ (let* ((clean-name (replace "_" "::" name))
-+ (enabled (not (any (lambda (exclude)
-+ (string-prefix? exclude clean-name))
-+ excludes))))
-+ (define (parse contents)
-+ (define (cons-match match prev)
-+ (cons
-+ `(("declaration" . ,(match:substring match 1))
-+ ("symbol" . ,(match:substring match 2))
-+ ("short-name" . ,(match:substring match 3)))
-+ prev))
-+ (let* ((contents (skip-comments contents))
-+ (entries (fold-matches (make-regexp
-+ (string-append "^(void\\s+(test_"
-+ name
-+ "__(\\w+))\\s*\\(\\s*void\\s*\\))\\s*\\{")
-+ regexp/newline)
-+ contents
-+ '()
-+ cons-match))
-+ (entries (reverse entries))
-+ (callbacks (filter (lambda (entry)
-+ (match (assoc-ref entry "short-name")
-+ ("initialize" #f)
-+ ("cleanup" #f)
-+ (_ #t)))
-+ entries)))
-+ (if (> (length callbacks) 0)
-+ `(("name" . ,name)
-+ ("enabled" . ,(if enabled "1" "0"))
-+ ("clean-name" . ,clean-name)
-+ ("initialize" . ,(maybe-only (filter-map (lambda (entry)
-+ (match (assoc-ref entry "short-name")
-+ ("initialize" entry)
-+ (_ #f)))
-+ entries)))
-+ ("cleanup" . ,(maybe-only (filter-map (lambda (entry)
-+ (match (assoc-ref entry "short-name")
-+ ("cleanup" entry)
-+ (_ #f)))
-+ entries)))
-+ ("callbacks" . ,callbacks))
-+ #f)))
-+
-+ (define (refresh path)
-+ (and (file-exists? path)
-+ (parse (call-with-input-file path get-string-all))))
-+ (refresh path)))
-+
-+(define (generate-TestSuite path output excludes)
-+ (define (load)
-+ (define enter? (const #t))
-+ (define (leaf file stat result)
-+ (let* ((module-root (string-drop (dirname file)
-+ (string-length path)))
-+ (module-root (filter-map (match-lambda
-+ ("" #f)
-+ (a a))
-+ (string-split module-root #\/))))
-+ (define (make-module path)
-+ (let* ((name (string-join (append module-root (list (string-drop-right (basename path) (string-length ".c")))) "_"))
-+ (name (replace "-" "_" name)))
-+ (Module name path excludes)))
-+ (if (string-suffix? ".c" file)
-+ (let ((module (make-module file)))
-+ (if module
-+ (cons module result)
-+ result))
-+ result)))
-+ (define (down dir stat result)
-+ result)
-+ (define (up file state result)
-+ result)
-+ (define skip (const #f))
-+ (file-system-fold enter? leaf down up skip error '() path))
-+
-+ (define (CallbacksTemplate module)
-+ (string-append "static const struct clar_func _clar_cb_"
-+ (assoc-ref module "name") "[] = {\n"
-+ (string-join (map render-callback
-+ (assoc-ref module "callbacks"))
-+ ",\n")
-+ "\n};\n"))
-+
-+ (define (DeclarationTemplate module)
-+ (string-append (string-join (map (lambda (cb)
-+ (string-append "extern "
-+ (assoc-ref cb "declaration")
-+ ";"))
-+ (assoc-ref module "callbacks"))
-+ "\n")
-+ "\n"
-+ (if (assoc-ref module "initialize")
-+ (string-append "extern " (assoc-ref (assoc-ref module "initialize") "declaration") ";\n")
-+ "")
-+ (if (assoc-ref module "cleanup")
-+ (string-append "extern " (assoc-ref (assoc-ref module "cleanup") "declaration") ";\n")
-+ "")))
-+
-+ (define (InfoTemplate module)
-+ (string-append "
-+ {
-+ \"" (assoc-ref module "clean-name") "\",
-+ " (render-callback (assoc-ref module "initialize")) ",
-+ " (render-callback (assoc-ref module "cleanup")) ",
-+ _clar_cb_" (assoc-ref module "name") ", "
-+ (number->string (length (assoc-ref module "callbacks")))
-+ ", " (assoc-ref module "enabled") "
-+ }"))
-+
-+ (define (Write data)
-+ (define (name< module-a module-b)
-+ (string<? (assoc-ref module-a "name")
-+ (assoc-ref module-b "name")))
-+ (define modules (sort (load) name<))
-+
-+ (define (suite-count)
-+ (length modules))
-+
-+ (define (callback-count)
-+ (fold + 0 (map (lambda (entry)
-+ (length (assoc-ref entry "callbacks")))
-+ modules)))
-+
-+ (define (display-x value)
-+ (display value data))
-+
-+ (for-each (compose display-x DeclarationTemplate) modules)
-+ (for-each (compose display-x CallbacksTemplate) modules)
-+
-+ (display-x "static struct clar_suite _clar_suites[] = {")
-+ (display-x (string-join (map InfoTemplate modules) ","))
-+ (display-x "\n};\n")
-+
-+ (let ((suite-count-str (number->string (suite-count)))
-+ (callback-count-str (number->string (callback-count))))
-+ (display-x "static const size_t _clar_suite_count = ")
-+ (display-x suite-count-str)
-+ (display-x ";\n")
-+
-+ (display-x "static const size_t _clar_callback_count = ")
-+ (display-x callback-count-str)
-+ (display-x ";\n")
-+
-+ (display (string-append "Written `clar.suite` ("
-+ callback-count-str
-+ " tests in "
-+ suite-count-str
-+ " suites)"))
-+ (newline))
-+ #t)
-+
-+ (call-with-output-file (string-append output "/clar.suite") Write))
-+
-+;;; main
-+
-+(define (main)
-+ (define option-spec
-+ '((force (single-char #\f) (value #f))
-+ (exclude (single-char #\x) (value #t))
-+ (output (single-char #\o) (value #t))
-+ (help (single-char #\h) (value #f))))
-+
-+ (define options (getopt-long (command-line) option-spec #:stop-at-first-non-option #t))
-+ (define args (reverse (option-ref options '() '())))
-+ (when (> (length args) 1)
-+ (display "More than one path given\n")
-+ (exit 1))
-+
-+ (if (< (length args) 1)
-+ (set! args '(".")))
-+
-+ (let* ((path (car args))
-+ (output (option-ref options 'output path))
-+ (excluded (filter-map (match-lambda
-+ (('exclude . value) value)
-+ (_ #f))
-+ options)))
-+ (generate-TestSuite path output excluded)))
-+
-+(main)
diff --git a/gnu/packages/patches/suitesparse-mongoose-cmake.patch b/gnu/packages/patches/suitesparse-mongoose-cmake.patch
new file mode 100644
index 0000000000..e5062f9aaa
--- /dev/null
+++ b/gnu/packages/patches/suitesparse-mongoose-cmake.patch
@@ -0,0 +1,27 @@
+Fix required by suitesparse to build Mongoose
+
+The CMakeLists.txt of Mongoose assumes that SuiteSparse_config has been
+installed into the suitesparse source directory, which is not the case
+for us, as we are building suitesparse out-of-tree.
+
+SuiteSparse_config can instead be found in the ${CMAKE_INSTALL_PREFIX}
+directory.
+
+diff --git a/Mongoose/CMakeLists.txt b/Mongoose/CMakeLists.txt
+index 7e134ab..76fa9e2 100644
+--- a/Mongoose/CMakeLists.txt
++++ b/Mongoose/CMakeLists.txt
+@@ -148,10 +148,10 @@ set(CMAKE_CXX_STANDARD 11)
+ #set(CMAKE_CXX_STANDARD_REQUIRED ON)
+
+ # determine which SuiteSparse_config to use
+-if (EXISTS ${PROJECT_SOURCE_DIR}/../SuiteSparse_config)
+- message(STATUS "External ../SuiteSparse_config" ${BoldBlue} " found" ${ColourReset} ".")
++if (EXISTS ${CMAKE_INSTALL_PREFIX})
++ message(STATUS "External SuiteSparse_config" ${BoldBlue} " found" ${ColourReset} ".")
+ set ( SUITESPARSE_CONFIG_DIR ${PROJECT_SOURCE_DIR}/../SuiteSparse_config )
+- link_directories ( ${PROJECT_SOURCE_DIR}/../lib )
++ link_directories ( ${CMAKE_INSTALL_PREFIX}/lib )
+ message ( STATUS "Note: ../SuiteSparse_config must be compiled before compiling Mongoose" )
+ set ( SUITESPARSE_CONFIG_LIBRARY suitesparseconfig )
+ else ()
diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm
index e32e6c7b12..e01ebe72ec 100644
--- a/gnu/packages/patchutils.scm
+++ b/gnu/packages/patchutils.scm
@@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015, 2018 Leo Famulari <leo@famulari.name>
-;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019 Christopher Baines <mail@cbaines.net>
;;;
;;; This file is part of GNU Guix.
@@ -247,7 +247,7 @@ GiB).")
(define-public meld
(package
(name "meld")
- (version "3.20.1")
+ (version "3.20.2")
(source
(origin
(method url-fetch)
@@ -255,7 +255,7 @@ GiB).")
(version-major+minor version)
"/meld-" version ".tar.xz"))
(sha256
- (base32 "0jdj7kd6vj1mdc16gvrj1kar88b2j5875ajq18fx7cbc9ny46j55"))))
+ (base32 "0a0x156zr3w2yg0rnhwy39giy3xnfm6sqcfa4xcw4i6ahvwqa2dc"))))
(build-system python-build-system)
(native-inputs
`(("intltool" ,intltool)
diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm
index c065e97da5..5a536141f5 100644
--- a/gnu/packages/pdf.scm
+++ b/gnu/packages/pdf.scm
@@ -226,7 +226,7 @@ When present, Poppler is able to correctly render CJK and Cyrillic text.")
("python-pyqt" ,python-pyqt)
("poppler-qt5" ,poppler-qt5)
("qtbase" ,qtbase)))
- (home-page "https://pypi.python.org/pypi/python-poppler-qt5")
+ (home-page "https://pypi.org/project/python-poppler-qt5/")
(synopsis "Python bindings for Poppler-Qt5")
(description
"This package provides Python bindings for the Qt5 interface of the
@@ -392,7 +392,7 @@ using libspectre.")
(define-public zathura-djvu
(package
(name "zathura-djvu")
- (version "0.2.8")
+ (version "0.2.9")
(source (origin
(method url-fetch)
(uri
@@ -400,7 +400,7 @@ using libspectre.")
version ".tar.xz"))
(sha256
(base32
- "0axkv1crdxn0z44whaqp2ibkdqcykhjnxk7qzms0dp1b67an9rnh"))))
+ "0062n236414db7q7pnn3ccg5111ghxj3407pn9ri08skxskgirln"))))
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs
`(("djvulibre" ,djvulibre)
@@ -472,7 +472,7 @@ by using the @code{mupdf} rendering library.")
(define-public zathura-pdf-poppler
(package
(name "zathura-pdf-poppler")
- (version "0.2.9")
+ (version "0.3.0")
(source (origin
(method url-fetch)
(uri
@@ -480,7 +480,7 @@ by using the @code{mupdf} rendering library.")
version ".tar.xz"))
(sha256
(base32
- "1p4jcny0jniygns78mcf0nlm298dszh49qpmjmackrm6dq8hc25y"))))
+ "1vfl4vkyy3rf39r1sqaa7y8113bgkh2bkfq3nn2inis9mrykmk6m"))))
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs
`(("poppler" ,poppler)
@@ -508,7 +508,7 @@ by using the poppler rendering engine.")
(define-public zathura
(package
(name "zathura")
- (version "0.4.3")
+ (version "0.4.5")
(source (origin
(method url-fetch)
(uri
@@ -516,7 +516,7 @@ by using the poppler rendering engine.")
version ".tar.xz"))
(sha256
(base32
- "0hgx5x09i6d0z45llzdmh4l348fxh1y102sb1w76f2fp4r21j4ky"))))
+ "0b3nrcvykkpv2vm99kijnic2gpfzva520bsjlihaxandzfm9ff8c"))))
(native-inputs `(("pkg-config" ,pkg-config)
("gettext" ,gettext-minimal)
("glib:bin" ,glib "bin")
@@ -1270,13 +1270,13 @@ manipulating PDF documents from the command line. It supports
(define-public weasyprint
(package
(name "weasyprint")
- (version "50")
+ (version "51")
(source
(origin
(method url-fetch)
(uri (pypi-uri "WeasyPrint" version))
(sha256
- (base32 "0invs96zvmcr6wh5klj52jrcnr9qg150v9wpmbhcsf3vv1d1hbcw"))
+ (base32 "0skdzwq7cd715dnnds6abx0k0xmmnmsqp0vb1r1w20sg7abp3sdk"))
(patches (search-patches "weasyprint-library-paths.patch"))))
(build-system python-build-system)
(arguments
@@ -1304,11 +1304,11 @@ manipulating PDF documents from the command line. It supports
(lambda _
(substitute* "setup.cfg"
;; flake8 and isort syntax checks fail, which is not our
- ;; business
+ ;; business.
(("addopts = --flake8 --isort") ""))))
(replace 'check
(lambda _
- ;; run pytest, excluding one failing test
+ ;; Run pytest, excluding one failing test.
(invoke "pytest" "-k" "not test_flex_column_wrap_reverse"))))))
(inputs
`(("fontconfig" ,fontconfig)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index ac75616657..08d75525be 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -972,7 +972,7 @@ object to help create WSGI responses.")
(base32
"1ksbc726av9xacml6jhcfyn828hlhb9xlddpx6fcvnlvmpmpvhk9"))))
(build-system python-build-system)
- (home-page "https://pypi.python.org/pypi/zope.event")
+ (home-page "https://pypi.org/project/zope.event/")
(synopsis "Event publishing system for Python")
(description "Zope.event provides an event publishing API, intended for
use by applications which are unaware of any subscribers to their events. It
@@ -1021,10 +1021,10 @@ conforming to a given API or contract.")
"0zwxaaa66sqxg5k7zcrvs0fbg9ym1njnxnr28dfmchzhwjvwnfzl"))))
(build-system python-build-system)
(arguments
- '(#:tests? #f)) ; circular dependency with zope.testrunner
+ '(#:tests? #f)) ; circular dependency with zope.testrunner
(propagated-inputs
`(("python-zope-interface" ,python-zope-interface)))
- (home-page "http://cheeseshop.python.org/pypi/zope.exceptions")
+ (home-page "https://pypi.org/project/zope.exceptions/")
(synopsis "Zope exceptions")
(description "Zope.exceptions provides general-purpose exception types
that have uses outside of the Zope framework.")
@@ -1051,7 +1051,7 @@ that have uses outside of the Zope framework.")
(for-each delete-file (find-files "." "(\\.pyc|~)$"))
#t))))
(build-system python-build-system)
- (home-page "https://pypi.python.org/pypi/zope.testing")
+ (home-page "https://pypi.org/project/zope.testing/")
(synopsis "Zope testing helpers")
(description "Zope.testing provides a number of testing utilities for HTML
forms, HTTP servers, regular expressions, and more.")
@@ -1082,7 +1082,7 @@ forms, HTTP servers, regular expressions, and more.")
("unzip" ,unzip)))
(propagated-inputs
`(("python-zope-interface" ,python-zope-interface)))
- (home-page "https://pypi.python.org/pypi/zope.testrunner")
+ (home-page "https://pypi.org/project/zope.testrunner/")
(synopsis "Zope testrunner script")
(description "Zope.testrunner provides a script for running Python
tests.")
@@ -1109,7 +1109,7 @@ tests.")
(base32
"1rslyph0klk58dmjjy4j0jxy21k03azksixc3x2xhqbkv97cmzml"))))
(build-system python-build-system)
- (home-page "https://pypi.python.org/pypi/zope.i18nmessageid")
+ (home-page "https://pypi.org/project/zope.i18nmessageid/")
(synopsis "Message identifiers for internationalization")
(description "Zope.i18nmessageid provides facilities for declaring
internationalized messages within program source text.")
@@ -1140,7 +1140,7 @@ internationalized messages within program source text.")
`(("python-zope-testing" ,python-zope-testing)
("python-coverage" ,python-coverage)
("python-nose" ,python-nose)))
- (home-page "https://pypi.python.org/pypi/zope.schema")
+ (home-page "https://pypi.org/project/zope.schema/")
(synopsis "Zope data schemas")
(description "Zope.scheme provides extensions to zope.interface for
defining data schemas.")
@@ -1165,7 +1165,7 @@ defining data schemas.")
(propagated-inputs
`(("python-zope-i18nmessageid" ,python-zope-i18nmessageid)
("python-zope-schema" ,python-zope-schema)))
- (home-page "https://pypi.python.org/pypi/zope.configuration")
+ (home-page "https://pypi.org/project/zope.configuration/")
(synopsis "Zope Configuration Markup Language")
(description "Zope.configuration implements ZCML, the Zope Configuration
Markup Language.")
@@ -1190,7 +1190,7 @@ Markup Language.")
'(#:tests? #f)) ; FIXME: Tests can't find zope.interface.
(propagated-inputs
`(("python-zope-interface" ,python-zope-interface)))
- (home-page "https://pypi.python.org/pypi/zope.proxy")
+ (home-page "https://pypi.org/project/zope.proxy/")
(synopsis "Generic, transparent proxies")
(description "Zope.proxy provides generic, transparent proxies for Python.
Proxies are special objects which serve as mostly-transparent wrappers around
@@ -1219,7 +1219,7 @@ brokering, etc.) for which the proxy is responsible.")
(propagated-inputs
`(("python-zope-proxy" ,python-zope-proxy)
("python-zope-schema" ,python-zope-schema)))
- (home-page "https://pypi.python.org/pypi/zope.location/")
+ (home-page "https://pypi.org/project/zope.location/")
(synopsis "Zope location library")
(description "Zope.location implements the concept of \"locations\" in
Zope3, which are are special objects that have a structural location.")
@@ -1253,7 +1253,7 @@ Zope3, which are are special objects that have a structural location.")
("python-zope-location" ,python-zope-location)
("python-zope-testrunner" ,python-zope-testrunner)
("python-zope-testing" ,python-zope-testing)))
- (home-page "https://pypi.python.org/pypi/zope.security")
+ (home-page "https://pypi.org/project/zope.security/")
(synopsis "Zope security framework")
(description "Zope.security provides a generic mechanism to implement
security policies on Python objects.")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index ed599cd5d5..bc5ff3d2d8 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -475,14 +475,14 @@ NetCDF files can also be read and modified. Python-HDF4 is a fork of
(define-public python-h5py
(package
(name "python-h5py")
- (version "2.8.0")
+ (version "2.10.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "h5py" version))
(sha256
(base32
- "0mdr6wrq02ac93m1aqx9kad0ppfzmm4imlxqgyy1x4l7hmdcc9p6"))))
+ "0baipzv8n93m0dq0riyi8rfhzrjrfrfh8zqhszzp1j2xjac2fhc4"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; no test target
@@ -504,10 +504,11 @@ NetCDF files can also be read and modified. Python-HDF4 is a fork of
`(("python-six" ,python-six)
("python-numpy" ,python-numpy)))
(inputs
- `(("hdf5" ,hdf5)))
+ `(("hdf5" ,hdf5-1.10)))
(native-inputs
`(("python-cython" ,python-cython)
- ("python-pkgconfig" ,python-pkgconfig)))
+ ("python-pkgconfig" ,python-pkgconfig)
+ ("pkg-config" ,pkg-config)))
(home-page "https://www.h5py.org/")
(synopsis "Read and write HDF5 files from Python")
(description
@@ -748,7 +749,7 @@ other machines, such as over the network.")
;; One could bootstrap with an internal untested setuptools.
(arguments
`(#:tests? #f))
- (home-page "https://pypi.python.org/pypi/setuptools")
+ (home-page "https://pypi.org/project/setuptools/")
(synopsis
"Library designed to facilitate packaging Python projects")
(description
@@ -1111,7 +1112,7 @@ from the Python interpreter, or as a small part of a larger application.")
(native-inputs
`(("python-py" ,python-py)
("python-pytest" ,python-pytest-bootstrap)))
- (home-page "https://pypi.python.org/pypi/six/")
+ (home-page "https://pypi.org/project/six/")
(synopsis "Python 2 and 3 compatibility utilities")
(description
"Six is a Python 2 and 3 compatibility library. It provides utility
@@ -1282,7 +1283,7 @@ Python 3.3+.")
(arguments `(#:python ,python-2
#:tests? #f)) ; invalid command "test"
;; Currently no offical homepage.
- (home-page "https://pypi.python.org/pypi/dogtail/")
+ (home-page "https://pypi.org/project/dogtail/")
(synopsis "GUI test tool and automation framework written in Python")
(description
"Dogtail is a GUI test tool and automation framework written in Python.
@@ -1393,7 +1394,7 @@ bug tracker.")
(build-system python-build-system)
(arguments
`(#:python ,python-2))
- (home-page "https://pypi.python.org/pypi/enum/")
+ (home-page "https://pypi.org/project/enum/")
(synopsis "Robust enumerated type support in Python")
(description
"This provides a module for robust enumerations in Python. It has
@@ -1414,7 +1415,7 @@ compatibility.")
(base32
"1cgm5ng2gcfrkrm3hc22brl6chdmv67b9zvva9sfs7gn7dwc9n4a"))))
(build-system python-build-system)
- (home-page "https://pypi.python.org/pypi/enum34")
+ (home-page "https://pypi.org/project/enum34/")
(synopsis "Backported Python 3.4 Enum")
(description
"Enum34 is the new Python stdlib enum module available in Python 3.4
@@ -1757,7 +1758,7 @@ code introspection, and logging.")
(build-system python-build-system)
(arguments
`(#:tests? #f))
- (home-page "http://docs.openstack.org/developer/pbr/")
+ (home-page "https://docs.openstack.org/pbr/latest/")
(synopsis "Minimal build of python-pbr used for bootstrapping")
(description
"Used only for bootstrapping python2-pbr, you should not need this.")
@@ -2158,7 +2159,7 @@ cutting and pasting that code over and over.")
(base32
"1s6cp2lv4m0f00hjckjz8p6m7d3n3v16jvg353llf5ia1iqsnsib"))))
(build-system python-build-system)
- (home-page "https://pypi.python.org/pypi/Unidecode")
+ (home-page "https://pypi.org/project/Unidecode/")
(synopsis "ASCII transliterations of Unicode text")
(description
"Unidecode provides ASCII transliterations of Unicode text. Unidecode is
@@ -2337,7 +2338,7 @@ environments and back.")
(build-system python-build-system)
(inputs
`(("libyaml" ,libyaml)))
- (home-page "http://pyyaml.org/wiki/PyYAML")
+ (home-page "https://pyyaml.org")
(synopsis "YAML parser and emitter for Python")
(description
"PyYAML is a YAML parser and emitter for Python. PyYAML features a
@@ -3829,7 +3830,7 @@ that client code uses to construct the grammar directly in Python code.")
`(("python-sphinx" ,python-sphinx)))
(native-inputs
`(("python-nose" ,python-nose)))
- (home-page "https://pypi.python.org/pypi/numpydoc")
+ (home-page "https://pypi.org/project/numpydoc/")
(synopsis
"Numpy's Sphinx extensions")
(description
@@ -4779,7 +4780,7 @@ PNG, PostScript, PDF, and SVG file output.")
(sha256
(base32 "0308djallnh00v112y5b7nadl657ysmkp6vc8xn51d6yzc9zm7n3"))))
(build-system python-build-system)
- (home-page "https://pypi.python.org/pypi/decorator/")
+ (home-page "https://pypi.org/project/decorator/")
(synopsis "Python module to simplify usage of decorators")
(description
"The aim of the decorator module is to simplify the usage of decorators
@@ -4808,7 +4809,7 @@ etc. The core of this module is a decorator factory.")
(arguments '(#:tests? #f))
(native-inputs
`(("python-nose" ,python-nose)))
- (home-page "https://pypi.python.org/pypi/drmaa")
+ (home-page "https://pypi.org/project/drmaa/")
(synopsis "Python bindings for the DRMAA library")
(description
"A Python package for Distributed Resource Management (DRM) job
@@ -5023,7 +5024,7 @@ them as the version argument or in a SCM managed file.")
(propagated-inputs
`(("python-scandir" ,python-scandir)
("python-six" ,python-six)))
- (home-page "https://pypi.python.org/pypi/pathlib2/")
+ (home-page "https://pypi.org/project/pathlib2/")
(synopsis "Object-oriented file system paths")
(description "The goal of pathlib2 is to provide a backport of the
standard @code{pathlib} module which tracks the standard library module, so
@@ -6930,7 +6931,7 @@ from an XML-based format.")
(description "This package provides a Python library to parse, manipulate
or create documents in LilyPond format. A command line program ly is also
provided that can be used to do various manipulations with LilyPond files.")
- (home-page "https://pypi.python.org/pypi/python-ly")
+ (home-page "https://pypi.org/project/python-ly/")
(license license:gpl2+)))
(define-public python-appdirs
@@ -7035,7 +7036,7 @@ should be stored on various operating systems.")
(description "MessagePack is a fast, compact binary serialization format,
suitable for similar data to JSON. This package provides CPython bindings for
reading and writing MessagePack data.")
- (home-page "https://pypi.python.org/pypi/msgpack/")
+ (home-page "https://pypi.org/project/msgpack/")
(license license:asl2.0)))
;; This msgpack library's name changed from "python-msgpack" to "msgpack" with
@@ -7528,7 +7529,7 @@ a hash value.")
(arguments
;; There are no tests.
`(#:tests? #f))
- (home-page "https://pypi.python.org/pypi/termcolor")
+ (home-page "https://pypi.org/project/termcolor/")
(synopsis "ANSII Color formatting for terminal output")
(description
"This package provides ANSII Color formatting for output in terminals.")
@@ -8782,7 +8783,7 @@ for the module to work under Python 3.3.")
(synopsis "Colored terminal text rendering for Python")
(description "Colorama is a Python library for rendering colored terminal
text.")
- (home-page "https://pypi.python.org/pypi/colorama")
+ (home-page "https://pypi.org/project/colorama/")
(license license:bsd-3)))
(define-public python2-colorama
@@ -8830,7 +8831,7 @@ library as well as on the command line.")
(synopsis "Plugin and hook calling mechanism for Python")
(description "Pluggy is an extraction of the plugin manager as used by
Pytest but stripped of Pytest specific details.")
- (home-page "https://pypi.python.org/pypi/pluggy")
+ (home-page "https://pypi.org/project/pluggy/")
(license license:expat)))
(define-public python2-pluggy
@@ -9535,7 +9536,7 @@ anymore.")
(propagated-inputs
`(("python2-scandir" ,python2-scandir)
("python2-six" ,python2-six)))
- (home-page "https://pypi.python.org/pypi/pathlib2/")
+ (home-page "https://pypi.org/project/pathlib2/")
(synopsis "Object-oriented file system paths - backport of standard
pathlib module")
(description "The goal of pathlib2 is to provide a backport of standard
@@ -12328,7 +12329,7 @@ projects.")
(define-public python-invoke
(package
(name "python-invoke")
- (home-page "http://www.pyinvoke.org/")
+ (home-page "https://www.pyinvoke.org/")
(version "1.3.0")
(source (origin
(method url-fetch)
@@ -13486,7 +13487,7 @@ which adds support for zone identifiers to IPv6 addresses.")
(base32
"192pclzs2y0yaywqkrlvd0x73740q310kvqvm6jldhi619mq59wi"))))
(build-system python-build-system)
- (home-page "https://pypi.python.org/pypi/rfc3987")
+ (home-page "https://pypi.org/project/rfc3987/")
(synopsis "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)")
(description "@code{rfc3987} provides routines for parsing and
validation of URIs (see RFC 3986) and IRIs (see RFC 3987).")
@@ -15735,23 +15736,126 @@ infrastructure at import time, runtime, or statically (using the included pycc
tool).")
(license license:bsd-3)))
+(define-public python-numcodecs
+ (package
+ (name "python-numcodecs")
+ (version "0.6.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "numcodecs" version))
+ (sha256
+ (base32
+ "0kbfr8pl3x9glsypbq8hzim003f16ml1b1cvgrh4w1sdvgal6j7g"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-msgpack" ,python-msgpack)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)
+ ("python-setuptools-scm" ,python-setuptools-scm)))
+ (home-page "https://github.com/zarr-developers/numcodecs")
+ (synopsis "Buffer compression and transformation codecs")
+ (description
+ "This Python package provides buffer compression and transformation
+codecs for use in data storage and communication applications.")
+ (license license:expat)))
+
+(define-public python-asciitree
+ (package
+ (name "python-asciitree")
+ (version "0.3.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "asciitree" version))
+ (sha256
+ (base32
+ "0vhgri2m2xlnibhz4xwn4hpbc7xacisxjqrk6k5kyppq96vbk92a"))))
+ (build-system python-build-system)
+ (home-page "https://github.com/mbr/asciitree")
+ (synopsis "Draws ASCII trees")
+ (description "This package draws tree structures using characters.")
+ (license license:expat)))
+
+(define-public python-zarr
+ (package
+ (name "python-zarr")
+ (version "2.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "zarr" version))
+ (sha256
+ (base32
+ "026n3sjzjv2gmwx6y72b8ij0hk42bc8zdbvfj5gdqzd4i6wj3ajk"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'disable-service-tests
+ (lambda _
+ (setenv "ZARR_TEST_ABS" "0")
+ (setenv "ZARR_TEST_MONGO" "0")
+ (setenv "ZARR_TEST_REDIS" "0")
+ #t))
+ (replace 'check
+ (lambda _
+ (invoke "pytest" "-vv" "-k" "not lmdb")
+ #t)))))
+ (propagated-inputs
+ `(("python-asciitree" ,python-asciitree)
+ ("python-fasteners" ,python-fasteners)
+ ("python-numcodecs" ,python-numcodecs)
+ ("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)
+ ("python-setuptools-scm" ,python-setuptools-scm)))
+ (home-page "https://github.com/zarr-developers/zarr-python")
+ (synopsis "Chunked, compressed, N-dimensional arrays for Python")
+ (description
+ "This package provides an implementation of chunked, compressed,
+N-dimensional arrays for Python.")
+ (license license:expat)))
+
(define-public python-anndata
(package
(name "python-anndata")
- (version "0.6.18")
+ (version "0.7.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "anndata" version))
(sha256
(base32
- "03x83yjaccbqszj7x4fwwmpil0ai59yx64d1zmf2691za3j03w73"))))
+ "0rnfbpr55j1a1bi2kd4mz444741hrn74kz90h5rnjr59jmpfnh09"))))
(build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'delete-inconvenient-tests
+ (lambda _
+ ;; This test depends on python-scikit-learn.
+ (delete-file "anndata/tests/test_inplace_subset.py")
+ #t))
+ (delete 'check)
+ (add-after 'install 'check
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest" "-vv"))))))
(propagated-inputs
`(("python-h5py" ,python-h5py)
+ ("python-importlib-metadata" ,python-importlib-metadata)
("python-natsort" ,python-natsort)
+ ("python-numcodecs" ,python-numcodecs)
+ ("python-packaging" ,python-packaging)
("python-pandas" ,python-pandas)
- ("python-scipy" ,python-scipy)))
+ ("python-scipy" ,python-scipy)
+ ("python-zarr" ,python-zarr)))
+ (native-inputs
+ `(("python-joblib" ,python-joblib)
+ ("python-pytest" ,python-pytest)
+ ("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://github.com/theislab/anndata")
(synopsis "Annotated data for data analysis pipelines")
(description "Anndata is a package for simple (functional) high-level APIs
diff --git a/gnu/packages/regex.scm b/gnu/packages/regex.scm
index ef0d5d854b..5654104bcf 100644
--- a/gnu/packages/regex.scm
+++ b/gnu/packages/regex.scm
@@ -30,7 +30,7 @@
(define-public re2
(package
(name "re2")
- (version "2020-01-01")
+ (version "2020-03-03")
(home-page "https://github.com/google/re2")
(source (origin
(method git-fetch)
@@ -38,7 +38,7 @@
(file-name (git-file-name name version))
(sha256
(base32
- "0gcli7y2ax3karx7m1q1r9qm49danaxbgxslywjwmya5nmr7x3p4"))))
+ "0f1fncvg41dg9k06jiqbd7k51ljihk7rjb0kvxkbrlvgbzlpb860"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((guix build gnu-build-system)
diff --git a/gnu/packages/scsi.scm b/gnu/packages/scsi.scm
index f8c5d5ef60..803f49931e 100644
--- a/gnu/packages/scsi.scm
+++ b/gnu/packages/scsi.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016 Chris Marusich <cmmarusich@gmail.com>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -27,14 +27,14 @@
(define-public sg3-utils
(package
(name "sg3-utils")
- (version "1.44")
+ (version "1.45")
(source (origin
(method url-fetch)
(uri (string-append "http://sg.danny.cz/sg/p/sg3_utils-"
version ".tar.xz"))
(sha256
(base32
- "01avlgrbxlij8spish4i69ji1m49biz4mbayzzc2qx0hcl8ar56a"))))
+ "1vmjb17y33a73sv7jg8fzs6bhr7yh2k9sba81sjiyf1pvi3vbnn7"))))
(build-system gnu-build-system)
(home-page "http://sg.danny.cz/sg/sg3_utils.html")
(synopsis "SCSI device utilities")
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index b083ed02bd..81956c85e2 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -504,14 +504,14 @@ code for possible problems.")
(define-public r-foreign
(package
(name "r-foreign")
- (version "0.8-75")
+ (version "0.8-76")
(source
(origin
(method url-fetch)
(uri (cran-uri "foreign" version))
(sha256
(base32
- "0g4mi101srjbl17ydb2hl3854m3xj0llj6861lfr30sp08nkqavl"))))
+ "1z6x2x1z12wnv0z4p74d91r5wfaq30sdz4ynwx0lncz1q45mhbh5"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/foreign")
(synopsis "Read data stored by other statistics software")
@@ -590,13 +590,13 @@ and operations on them using LAPACK and SuiteSparse.")
(define-public r-nlme
(package
(name "r-nlme")
- (version "3.1-144")
+ (version "3.1-145")
(source
(origin
(method url-fetch)
(uri (cran-uri "nlme" version))
(sha256
- (base32 "1gqyq53fdq23wsi3f4n9vg4mn5i0v18zam5lnzlpg581xifx2779"))))
+ (base32 "1i9a3afdmn2ziks0imz0j09ay9n0zb9mhrymy9mg97vvlz5diwrh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -933,13 +933,13 @@ in which the whole-plots or split-plots or both can be freely exchangeable.")
(define-public r-plyr
(package
(name "r-plyr")
- (version "1.8.5")
+ (version "1.8.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "plyr" version))
(sha256
- (base32 "0x4mbb3rgv1ayxqidw0p9i10khbg51fz5r62vw4il8d7licqq07a"))))
+ (base32 "11sjjdn146w95s1vsfmmgdls082cbnm1slv98xvyjhsl2mpx4mga"))))
(build-system r-build-system)
(propagated-inputs `(("r-rcpp" ,r-rcpp)))
(home-page "http://had.co.nz/plyr")
diff --git a/gnu/packages/storage.scm b/gnu/packages/storage.scm
index 1691939d7f..376a801fe2 100644
--- a/gnu/packages/storage.scm
+++ b/gnu/packages/storage.scm
@@ -53,18 +53,16 @@
(define-public ceph
(package
(name "ceph")
- (version "14.2.7")
+ (version "14.2.8")
(source (origin
(method url-fetch)
(uri (string-append "https://download.ceph.com/tarballs/ceph-"
version ".tar.gz"))
(sha256
(base32
- "0qiqhm6hvz299q54k3i4crnb5dhpq6xnn2yqih9pxn9van0dq1ln"))
+ "0p7pjycqhxqg1mmix8ykx3xqq01d560p54iiidxps0rcvwfkyyki"))
(patches
- (search-patches "ceph-boost-compat.patch"
- "ceph-volume-respect-PATH.patch"
- "ceph-disable-cpu-optimizations.patch"))
+ (search-patches "ceph-disable-cpu-optimizations.patch"))
(modules '((guix build utils)))
(snippet
'(begin
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index a8cb4cc347..514dfe7ab7 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -15,7 +15,7 @@
;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com>
;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2017 André <eu@euandre.org>
-;;; Copyright © 2017, 2018 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2017, 2018, 2020 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at>
;;; Copyright © 2017 Oleg Pykhalov <go.wigust@gmail.com>
;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
@@ -534,7 +534,7 @@ everything from small to very large projects with speed and efficiency.")
(define-public libgit2
(package
(name "libgit2")
- (version "0.28.4")
+ (version "0.99.0")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -543,21 +543,37 @@ everything from small to very large projects with speed and efficiency.")
(file-name (git-file-name name version))
(sha256
(base32
- "171b25aym4q88bidc4c76y4l6jmdwifm3q9zjqsll0wjhlkycfy1"))
- (patches (search-patches "libgit2-avoid-python.patch"
- "libgit2-mtime-0.patch"))
+ "0qxzv49ip378g1n7hrbifb9c6pys2kj1hnxcafmbb94gj3pgd9kg"))
+ (patches (search-patches "libgit2-mtime-0.patch"))
- ;; Remove bundled software.
+ ;; Remove bundled software. Keep "http-parser" because it
+ ;; contains patches that are not available in the system version.
(snippet '(begin
- (delete-file-recursively "deps")
+ (with-directory-excursion "deps"
+ (for-each (lambda (dir)
+ (delete-file-recursively dir))
+ (lset-difference equal?
+ (scandir ".")
+ '("." ".." "http-parser"))))
#t))
- (modules '((guix build utils)))))
+ (modules '((guix build utils)
+ (srfi srfi-1)
+ (ice-9 ftw)))))
(build-system cmake-build-system)
(outputs '("out" "debug"))
(arguments
- `(#:configure-flags '("-DUSE_SHA1DC=ON") ; SHA-1 collision detection
+ `(#:configure-flags '("-DUSE_NTLMCLIENT=OFF" ;TODO: package this
+ "-DREGEX_BACKEND=pcre2")
#:phases
(modify-phases %standard-phases
+ (add-after 'unpack 'fix-pcre2-reference
+ (lambda _
+ ;; Use PCRE2 with 8-bit character support, as there is no "libpcre2.pc".
+ ;; See <https://github.com/libgit2/libgit2/issues/5438>.
+ (substitute* "src/CMakeLists.txt"
+ (("\"libpcre2\"")
+ "\"libpcre2-8\""))
+ #t))
(add-after 'unpack 'fix-hardcoded-paths
(lambda _
(substitute* "tests/repo/init.c"
@@ -574,14 +590,14 @@ everything from small to very large projects with speed and efficiency.")
(replace 'check
(lambda _ (invoke "./libgit2_clar" "-v" "-Q"))))))
(inputs
- `(("libssh2" ,libssh2)
- ("http-parser" ,http-parser)))
+ `(("libssh2" ,libssh2)))
(native-inputs
- `(("guile" ,guile-2.2)
- ("pkg-config" ,pkg-config)))
+ `(("pkg-config" ,pkg-config)
+ ("python" ,python)))
(propagated-inputs
- ;; These two libraries are in 'Requires.private' in libgit2.pc.
+ ;; These libraries are in 'Requires.private' in libgit2.pc.
`(("openssl" ,openssl)
+ ("pcre2" ,pcre2)
("zlib" ,zlib)))
(home-page "https://libgit2.github.com/")
(synopsis "Library providing Git core methods")
diff --git a/gnu/packages/webkit.scm b/gnu/packages/webkit.scm
index f9ef1cb44b..1474b6623d 100644
--- a/gnu/packages/webkit.scm
+++ b/gnu/packages/webkit.scm
@@ -93,14 +93,14 @@ backend which implements them.")
(define-public wpebackend-fdo
(package
(name "wpebackend-fdo")
- (version "1.4.1")
+ (version "1.4.2")
(source (origin
(method url-fetch)
(uri (string-append "https://wpewebkit.org/releases/"
"wpebackend-fdo-" version ".tar.xz"))
(sha256
(base32
- "1799vf6wc78z15l39sfh39l5rrvlqpi29ynjm0324rpsrfvs0jb2"))))
+ "07wd736d4nhd2vpxnjzv9pb8firvbn11jmdbnhpkhjxbxa1k86pw"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f)) ;no tests
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index d79af78db2..8193975555 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -267,14 +267,14 @@ commands would.")
(define-public i3-wm
(package
(name "i3-wm")
- (version "4.17.1")
+ (version "4.18")
(source (origin
(method url-fetch)
(uri (string-append "https://i3wm.org/downloads/i3-"
version ".tar.bz2"))
(sha256
(base32
- "0iazv2i2rgmakzh95pgj6iapyzn7bdpcbcd35a79mhlml4ry33qy"))))
+ "0dv5g8ycfmijxfjyw8hzsxaf80v09lb73zh7x2vszy78h3amifqz"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
diff --git a/gnu/tests.scm b/gnu/tests.scm
index 60e7ef30c0..705bf561a6 100644
--- a/gnu/tests.scm
+++ b/gnu/tests.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
@@ -254,6 +254,12 @@ the system under test."
(set-record-type-printer! <system-test> write-system-test)
+(define-gexp-compiler (compile-system-test (test <system-test>)
+ system target)
+ "Compile TEST to a derivation."
+ ;; XXX: SYSTEM and TARGET are ignored.
+ (system-test-value test))
+
(define (test-modules)
"Return the list of modules that define system tests."
(scheme-modules (dirname (search-path %load-path "guix.scm"))
diff --git a/gnu/tests/base.scm b/gnu/tests/base.scm
index a891711844..37b83dc7ec 100644
--- a/gnu/tests/base.scm
+++ b/gnu/tests/base.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
;;;
;;; This file is part of GNU Guix.
@@ -55,7 +55,7 @@
(define* (run-basic-test os command #:optional (name "basic")
- #:key initialization)
+ #:key initialization root-password)
"Return a derivation called NAME that tests basic features of the OS started
using COMMAND, a gexp that evaluates to a list of strings. Compare some
properties of running system to what's declared in OS, an <operating-system>.
@@ -63,7 +63,10 @@ properties of running system to what's declared in OS, an <operating-system>.
When INITIALIZATION is true, it must be a one-argument procedure that is
passed a gexp denoting the marionette, and it must return gexp that is
inserted before the first test. This is used to introduce an extra
-initialization step, such as entering a LUKS passphrase."
+initialization step, such as entering a LUKS passphrase.
+
+When ROOT-PASSWORD is true, enter it as the root password when logging in.
+Otherwise assume that there is no password for root."
(define special-files
(service-value
(fold-services (operating-system-services os)
@@ -300,7 +303,19 @@ info --version")
marionette)
;; Now we can type.
- (marionette-type "root\n\nid -un > logged-in\n" marionette)
+ (let ((password #$root-password))
+ (if password
+ (begin
+ (marionette-type "root\n" marionette)
+ (wait-for-screen-text marionette
+ (lambda (text)
+ (string-contains text "Password"))
+ #:ocrad
+ #$(file-append ocrad "/bin/ocrad"))
+ (marionette-type (string-append password "\n\n")
+ marionette))
+ (marionette-type "root\n\n" marionette)))
+ (marionette-type "id -un > logged-in\n" marionette)
;; It can take a while before the shell commands are executed.
(marionette-eval '(use-modules (rnrs io ports)) marionette)
diff --git a/gnu/tests/install.scm b/gnu/tests/install.scm
index 335efbd468..9ecc45cc04 100644
--- a/gnu/tests/install.scm
+++ b/gnu/tests/install.scm
@@ -26,10 +26,14 @@
#:use-module (gnu system install)
#:use-module (gnu system vm)
#:use-module ((gnu build vm) #:select (qemu-command))
+ #:use-module (gnu packages admin)
#:use-module (gnu packages bootloaders)
+ #:use-module (gnu packages cryptsetup)
+ #:use-module (gnu packages linux)
#:use-module (gnu packages ocr)
#:use-module (gnu packages package-management)
#:use-module (gnu packages virtualization)
+ #:use-module (gnu services networking)
#:use-module (guix store)
#:use-module (guix monads)
#:use-module (guix packages)
@@ -44,7 +48,10 @@
%test-raid-root-os
%test-encrypted-root-os
%test-btrfs-root-os
- %test-jfs-root-os))
+ %test-jfs-root-os
+
+ %test-gui-installed-os
+ %test-gui-installed-os-encrypted))
;;; Commentary:
;;;
@@ -179,6 +186,7 @@ reboot\n")
(define* (run-install target-os target-os-source
#:key
(script %simple-installation-script)
+ (gui-test #f)
(packages '())
(os (marionette-operating-system
(operating-system
@@ -191,6 +199,7 @@ reboot\n")
packages))
(kernel-arguments '("console=ttyS0")))
#:imported-modules '((gnu services herd)
+ (gnu installer tests)
(guix combinators))))
(installation-disk-image-file-system-type "ext4")
(target-size (* 2200 MiB)))
@@ -256,13 +265,21 @@ packages defined in installation-os."
(start 'term-tty1))
marionette)
- (marionette-eval '(call-with-output-file "/etc/target-config.scm"
- (lambda (port)
- (write '#$target-os-source port)))
- marionette)
-
- (exit (marionette-eval '(zero? (system #$script))
- marionette)))))
+ (when #$(->bool script)
+ (marionette-eval '(call-with-output-file "/etc/target-config.scm"
+ (lambda (port)
+ (write '#$target-os-source port)))
+ marionette)
+ (exit (marionette-eval '(zero? (system #$script))
+ marionette)))
+
+ (when #$(->bool gui-test)
+ (wait-for-unix-socket "/var/guix/installer-socket"
+ marionette)
+ (format #t "installer socket ready~%")
+ (force-output)
+ (exit #$(and gui-test
+ (gui-test #~marionette)))))))
(gexp->derivation "installation" install)))
@@ -890,4 +907,175 @@ build (current-guix) and then store a couple of full system images.")
(command (qemu-command/writable-image image)))
(run-basic-test %jfs-root-os command "jfs-root-os")))))
+
+;;;
+;;; Installation through the graphical interface.
+;;;
+
+(define %syslog-conf
+ ;; Syslog configuration that dumps to /dev/console, so we can see the
+ ;; installer's messages during the test.
+ (computed-file "syslog.conf"
+ #~(begin
+ (copy-file #$%default-syslog.conf #$output)
+ (chmod #$output #o644)
+ (let ((port (open-file #$output "a")))
+ (display "\n*.info /dev/console\n" port)
+ #t))))
+
+(define (operating-system-with-console-syslog os)
+ "Return OS with a syslog service that writes to /dev/console."
+ (operating-system
+ (inherit os)
+ (services (modify-services (operating-system-user-services os)
+ (syslog-service-type config
+ =>
+ (syslog-configuration
+ (inherit config)
+ (config-file %syslog-conf)))))))
+
+(define %root-password "foo")
+
+(define* (gui-test-program marionette #:key (encrypted? #f))
+ #~(let ()
+ (define (screenshot file)
+ (marionette-control (string-append "screendump " file)
+ #$marionette))
+
+ (setvbuf (current-output-port) 'none)
+ (setvbuf (current-error-port) 'none)
+
+ (marionette-eval '(use-modules (gnu installer tests))
+ #$marionette)
+
+ ;; Arrange so that 'converse' prints debugging output to the console.
+ (marionette-eval '(let ((console (open-output-file "/dev/console")))
+ (setvbuf console 'none)
+ (conversation-log-port console))
+ #$marionette)
+
+ ;; Tell the installer to not wait for the Connman "online" status.
+ (marionette-eval '(call-with-output-file "/tmp/installer-assume-online"
+ (const #t))
+ #$marionette)
+
+ ;; Run 'guix system init' with '--no-grafts', to cope with the lack of
+ ;; network access.
+ (marionette-eval '(call-with-output-file
+ "/tmp/installer-system-init-options"
+ (lambda (port)
+ (write '("--no-grafts" "--no-substitutes")
+ port)))
+ #$marionette)
+
+ (marionette-eval '(define installer-socket
+ (open-installer-socket))
+ #$marionette)
+ (screenshot "installer-start.ppm")
+
+ (marionette-eval '(choose-locale+keyboard installer-socket)
+ #$marionette)
+ (screenshot "installer-locale.ppm")
+
+ ;; Choose the host name that the "basic" test expects.
+ (marionette-eval '(enter-host-name+passwords installer-socket
+ #:host-name "liberigilo"
+ #:root-password
+ #$%root-password
+ #:users
+ '(("alice" "pass1")
+ ("bob" "pass2")))
+ #$marionette)
+ (screenshot "installer-services.ppm")
+
+ (marionette-eval '(choose-services installer-socket
+ #:desktop-environments '()
+ #:choose-network-service?
+ (const #f))
+ #$marionette)
+ (screenshot "installer-partitioning.ppm")
+
+ (marionette-eval '(choose-partitioning installer-socket
+ #:encrypted? #$encrypted?
+ #:passphrase #$%luks-passphrase)
+ #$marionette)
+ (screenshot "installer-run.ppm")
+
+ (marionette-eval '(conclude-installation installer-socket)
+ #$marionette)
+
+ (sync)
+ #t))
+
+(define %extra-packages
+ ;; Packages needed when installing with an encrypted root.
+ (list isc-dhcp
+ lvm2-static cryptsetup-static e2fsck/static
+ loadkeys-static))
+
+(define installation-os-for-gui-tests
+ ;; Operating system that contains all of %EXTRA-PACKAGES, needed for the
+ ;; target OS, as well as syslog output redirected to the console so we can
+ ;; see what the installer is up to.
+ (marionette-operating-system
+ (operating-system
+ (inherit (operating-system-with-console-syslog
+ (operating-system-add-packages
+ (operating-system-with-current-guix
+ installation-os)
+ %extra-packages)))
+ (kernel-arguments '("console=ttyS0")))
+ #:imported-modules '((gnu services herd)
+ (gnu installer tests)
+ (guix combinators))))
+
+(define* (guided-installation-test name #:key encrypted?)
+ (define os
+ (operating-system
+ (inherit %minimal-os)
+ (users (append (list (user-account
+ (name "alice")
+ (comment "Bob's sister")
+ (group "users")
+ (supplementary-groups
+ '("wheel" "audio" "video")))
+ (user-account
+ (name "bob")
+ (comment "Alice's brother")
+ (group "users")
+ (supplementary-groups
+ '("wheel" "audio" "video"))))
+ %base-user-accounts))
+ ;; The installer does not create a swap device in guided mode with
+ ;; encryption support.
+ (swap-devices (if encrypted? '() '("/dev/vdb2")))
+ (services (cons (service dhcp-client-service-type)
+ (operating-system-user-services %minimal-os)))))
+
+ (system-test
+ (name name)
+ (description
+ "Install an OS using the graphical installer and test it.")
+ (value
+ (mlet* %store-monad ((image (run-install os '(this is unused)
+ #:script #f
+ #:os installation-os-for-gui-tests
+ #:gui-test
+ (lambda (marionette)
+ (gui-test-program
+ marionette
+ #:encrypted? encrypted?))))
+ (command (qemu-command/writable-image image)))
+ (run-basic-test os command name
+ #:initialization (and encrypted? enter-luks-passphrase)
+ #:root-password %root-password)))))
+
+(define %test-gui-installed-os
+ (guided-installation-test "gui-installed-os"
+ #:encrypted? #f))
+
+(define %test-gui-installed-os-encrypted
+ (guided-installation-test "gui-installed-os-encrypted"
+ #:encrypted? #t))
+
;;; install.scm ends here