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-rw-r--r--gnu/bootloader/grub.scm47
-rw-r--r--gnu/build/activation.scm2
-rw-r--r--gnu/build/image.scm6
-rw-r--r--gnu/installer/final.scm15
-rw-r--r--gnu/local.mk3
-rw-r--r--gnu/packages/admin.scm4
-rw-r--r--gnu/packages/adns.scm13
-rw-r--r--gnu/packages/algebra.scm4
-rw-r--r--gnu/packages/backup.scm8
-rw-r--r--gnu/packages/check.scm5
-rw-r--r--gnu/packages/ci.scm8
-rw-r--r--gnu/packages/cran.scm357
-rw-r--r--gnu/packages/crates-io.scm10
-rw-r--r--gnu/packages/crypto.scm5
-rw-r--r--gnu/packages/databases.scm153
-rw-r--r--gnu/packages/dhall.scm38
-rw-r--r--gnu/packages/dictionaries.scm4
-rw-r--r--gnu/packages/djvu.scm26
-rw-r--r--gnu/packages/documentation.scm2
-rw-r--r--gnu/packages/education.scm39
-rw-r--r--gnu/packages/emacs-xyz.scm4
-rw-r--r--gnu/packages/emulators.scm6
-rw-r--r--gnu/packages/file-systems.scm2
-rw-r--r--gnu/packages/game-development.scm62
-rw-r--r--gnu/packages/gnome.scm12
-rw-r--r--gnu/packages/gnuzilla.scm8
-rw-r--r--gnu/packages/golang.scm285
-rw-r--r--gnu/packages/graphics.scm4
-rw-r--r--gnu/packages/gtk.scm24
-rw-r--r--gnu/packages/java.scm6
-rw-r--r--gnu/packages/kde-utils.scm5
-rw-r--r--gnu/packages/libreoffice.scm4
-rw-r--r--gnu/packages/linux.scm120
-rw-r--r--gnu/packages/lisp-xyz.scm32
-rw-r--r--gnu/packages/machine-learning.scm6
-rw-r--r--gnu/packages/mail.scm19
-rw-r--r--gnu/packages/man.scm4
-rw-r--r--gnu/packages/maths.scm4
-rw-r--r--gnu/packages/maven.scm9
-rw-r--r--gnu/packages/messaging.scm4
-rw-r--r--gnu/packages/music.scm38
-rw-r--r--gnu/packages/networking.scm8
-rw-r--r--gnu/packages/package-management.scm6
-rw-r--r--gnu/packages/password-utils.scm15
-rw-r--r--gnu/packages/patches/dhall-remove-network-tests.patch97
-rw-r--r--gnu/packages/patches/exercism-disable-self-update.patch79
-rw-r--r--gnu/packages/pep.scm349
-rw-r--r--gnu/packages/php.scm4
-rw-r--r--gnu/packages/rpc.scm49
-rw-r--r--gnu/packages/serialization.scm4
-rw-r--r--gnu/packages/statistics.scm120
-rw-r--r--gnu/packages/tex.scm60
-rw-r--r--gnu/packages/text-editors.scm4
-rw-r--r--gnu/packages/version-control.scm14
-rw-r--r--gnu/packages/video.scm6
-rw-r--r--gnu/packages/web.scm17
-rw-r--r--gnu/packages/wm.scm298
-rw-r--r--gnu/packages/xfce.scm4
-rw-r--r--gnu/system.scm5
-rw-r--r--gnu/system/vm.scm1
60 files changed, 1732 insertions, 815 deletions
diff --git a/gnu/bootloader/grub.scm b/gnu/bootloader/grub.scm
index d4dbb57131..b905ae360c 100644
--- a/gnu/bootloader/grub.scm
+++ b/gnu/bootloader/grub.scm
@@ -5,6 +5,7 @@
;;; Copyright © 2017, 2020 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2019, 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2020 Stefan <stefan-guix@vodafonemail.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -135,41 +136,25 @@ file with the resolution provided in CONFIG."
(_ #f)))))
(define* (eye-candy config store-device store-mount-point
- #:key store-directory-prefix system port)
+ #:key store-directory-prefix port)
"Return a gexp that writes to PORT (a port-valued gexp) the 'grub.cfg' part
concerned with graphics mode, background images, colors, and all that.
STORE-DEVICE designates the device holding the store, and STORE-MOUNT-POINT is
its mount point; these are used to determine where the background image and
-fonts must be searched for. SYSTEM must be the target system string---e.g.,
-\"x86_64-linux\". STORE-DIRECTORY-PREFIX is a directory prefix to prepend to
-any store file name."
- (define setup-gfxterm-body
- (let ((gfxmode
- (or (and-let* ((theme (bootloader-configuration-theme config))
- (gfxmode (grub-theme-gfxmode theme)))
- (string-join gfxmode ";"))
- "auto")))
-
- ;; Intel and EFI systems need to be switched into graphics mode, whereas
- ;; most other modern architectures have no other mode and therefore
- ;; don't need to be switched.
-
- ;; XXX: Do we really need to restrict to x86 systems? We could imitate
- ;; what the GRUB default configuration does and decide based on whether
- ;; a user provided 'gfxterm' in the terminal-outputs field of their
- ;; bootloader-configuration record.
- (if (string-match "^(x86_64|i[3-6]86)-" system)
- (format #f "
- set gfxmode=~a
- insmod all_video
- insmod gfxterm~%" gfxmode)
- "")))
-
+fonts must be searched for. STORE-DIRECTORY-PREFIX is a directory prefix to
+prepend to any store file name."
(define (setup-gfxterm config font-file)
(if (memq 'gfxterm (bootloader-configuration-terminal-outputs config))
- #~(format #f "if loadfont ~a; then
- setup_gfxterm
-fi~%" #+font-file)
+ #~(format #f "
+if loadfont ~a; then
+ set gfxmode=~a
+ insmod all_video
+ insmod gfxterm
+fi~%"
+ #+font-file
+ #$(string-join
+ (grub-theme-gfxmode (bootloader-theme config))
+ ";"))
""))
(define (theme-colors type)
@@ -190,8 +175,6 @@ fi~%" #+font-file)
(and image
#~(format #$port "
-function setup_gfxterm {~a}
-
# Set 'root' to the partition that contains /gnu/store.
~a
@@ -206,7 +189,6 @@ else
set menu_color_normal=cyan/blue
set menu_color_highlight=white/blue
fi~%"
- #$setup-gfxterm-body
#$(grub-root-search store-device font-file)
#$(setup-gfxterm config font-file)
#$(grub-setup-io config)
@@ -380,7 +362,6 @@ menuentry ~s {
device
mount-point
#:store-directory-prefix store-directory-prefix
- #:system system
#:port #~port)))
(define keyboard-layout-config
diff --git a/gnu/build/activation.scm b/gnu/build/activation.scm
index b915e6bb67..4b67926e88 100644
--- a/gnu/build/activation.scm
+++ b/gnu/build/activation.scm
@@ -321,7 +321,7 @@ improvement."
(define (boot-time-system)
"Return the '--system' argument passed on the kernel command line."
(find-long-option "--system" (if (string-contains %host-type "linux-gnu")
- linux-command-line
+ (linux-command-line)
(command-line))))
(define* (activate-current-system
diff --git a/gnu/build/image.scm b/gnu/build/image.scm
index fb85bd4bb8..893b846976 100644
--- a/gnu/build/image.scm
+++ b/gnu/build/image.scm
@@ -161,8 +161,7 @@ deduplicates files common to CLOSURE and the rest of PREFIX."
references-graphs
(register-closures? #t)
system-directory
- (make-device-nodes
- make-essential-device-nodes)
+ make-device-nodes
#:allow-other-keys)
"Initialize the given ROOT directory. Use BOOTCFG and BOOTCFG-LOCATION to
install the bootloader configuration.
@@ -175,7 +174,8 @@ of the directory of the 'system' derivation."
(populate-store references-graphs root)
;; Populate /dev.
- (make-device-nodes root)
+ (when make-device-nodes
+ (make-device-nodes root))
(when register-closures?
(for-each (lambda (closure)
diff --git a/gnu/installer/final.scm b/gnu/installer/final.scm
index ece1aff95c..e06b104d59 100644
--- a/gnu/installer/final.scm
+++ b/gnu/installer/final.scm
@@ -127,7 +127,7 @@ USERS."
(lambda (port)
(match (string-tokenize (read-string port) %not-nul)
((argv0 _ ...)
- (unless (member (pk (basename argv0)) spare)
+ (unless (member (basename argv0) spare)
(syslog "Killing process ~a (~a)~%" pid argv0)
(kill pid SIGKILL)))
(_ #f))))))
@@ -205,7 +205,18 @@ or #f. Return #t on success and #f on failure."
(lambda ()
(start-service 'cow-store (list (%installer-target-dir))))
(lambda ()
- (run-command install-command #:locale locale))
+ ;; If there are any connected clients, assume that we are running
+ ;; installation tests. In that case, dump the standard and error
+ ;; outputs to syslog.
+ (if (not (null? (current-clients)))
+ (with-output-to-file "/dev/console"
+ (lambda ()
+ (with-error-to-file "/dev/console"
+ (lambda ()
+ (setvbuf (current-output-port) 'none)
+ (setvbuf (current-error-port) 'none)
+ (run-command install-command #:locale locale)))))
+ (run-command install-command #:locale locale)))
(lambda ()
(stop-service 'cow-store)
;; Remove the store overlay created at cow-store service start.
diff --git a/gnu/local.mk b/gnu/local.mk
index 771ad59b84..6738973e49 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -413,6 +413,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/pcre.scm \
%D%/packages/pdf.scm \
%D%/packages/pem.scm \
+ %D%/packages/pep.scm \
%D%/packages/perl.scm \
%D%/packages/perl-check.scm \
%D%/packages/perl-compression.scm \
@@ -863,7 +864,6 @@ dist_patch_DATA = \
%D%/packages/patches/desmume-gcc6-fixes.patch \
%D%/packages/patches/desmume-gcc7-fixes.patch \
%D%/packages/patches/dfu-programmer-fix-libusb.patch \
- %D%/packages/patches/dhall-remove-network-tests.patch \
%D%/packages/patches/diffutils-gets-undeclared.patch \
%D%/packages/patches/dkimproxy-add-ipv6-support.patch \
%D%/packages/patches/docbook-xsl-nonrecursive-string-subst.patch \
@@ -901,6 +901,7 @@ dist_patch_DATA = \
%D%/packages/patches/evilwm-lost-focus-bug.patch \
%D%/packages/patches/evolution-data-server-locales.patch \
%D%/packages/patches/evolution-data-server-libical-compat.patch \
+ %D%/packages/patches/exercism-disable-self-update.patch \
%D%/packages/patches/exiv2-CVE-2017-14860.patch \
%D%/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch \
%D%/packages/patches/extempore-unbundle-external-dependencies.patch \
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index bcbdf9b395..1a0e19b19a 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -213,7 +213,7 @@ usual file attributes can be checked for inconsistencies.")
(define-public progress
(package
(name "progress")
- (version "0.14")
+ (version "0.15")
(source
(origin
(method git-fetch)
@@ -221,7 +221,7 @@ usual file attributes can be checked for inconsistencies.")
(url "https://github.com/Xfennec/progress.git")
(commit (string-append "v" version))))
(sha256
- (base32 "1lk2v4b767klib93an4g3f7z5qrv9kdk9jf7545vw1immc4kamrl"))
+ (base32 "1cnb4ixlhshn139mj5sr42k5m6gjjbyqvkn1324c47niwrgp7dqm"))
(file-name (git-file-name name version))))
(build-system gnu-build-system)
(native-inputs
diff --git a/gnu/packages/adns.scm b/gnu/packages/adns.scm
index 5d8c6fdc91..57f34942d5 100644
--- a/gnu/packages/adns.scm
+++ b/gnu/packages/adns.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2015, 2016, 2018 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2018, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2019 Marius Bakke <mbakke@fastmail.com>
;;;
@@ -25,22 +25,23 @@
#:use-module (guix download)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
+ #:use-module (gnu packages m4)
#:use-module (gnu packages pkg-config))
(define-public adns
(package
(name "adns")
- (version "1.5.1")
+ (version "1.6.0")
(source (origin
(method url-fetch)
(uri (list (string-append "mirror://gnu/adns/adns-"
version ".tar.gz")
(string-append
- "http://www.chiark.greenend.org.uk/~ian/adns/ftp/adns-"
- version ".tar.gz")))
+ "https://www.chiark.greenend.org.uk/~ian/adns/ftp/adns-"
+ version ".tar.gz")))
(sha256
(base32
- "1ssfh94ck6kn98nf2yy6743srpgqgd167va5ja3bwx42igqjc42v"))))
+ "1pi0xl07pav4zm2jrbrfpv43s1r1q1y12awgak8k7q41m5jp4hpv"))))
(build-system gnu-build-system)
(arguments
;; Make sure the programs under bin/ fine libadns.so.
@@ -50,6 +51,8 @@
;; XXX: Tests expect real name resolution to work.
#:tests? #f))
+ (native-inputs
+ `(("m4" ,m4)))
(home-page "https://www.gnu.org/software/adns/")
(synopsis "Asynchronous DNS client library and utilities")
(description
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 1008d24cd3..b78e6ef304 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -609,7 +609,7 @@ matrices, and polynomials over the integers and over finite fields.")
(define-public singular
(package
(name "singular")
- (version "4.1.3p1")
+ (version "4.1.3p2")
(source
(origin
(method url-fetch)
@@ -623,7 +623,7 @@ matrices, and polynomials over the integers and over finite fields.")
#\.) "-")
"/singular-" version ".tar.gz"))
(sha256 (base32
- "1f02mrjwh7pd3pydfvjxsw5rph2qmkg1idwqrdsax924sa77sljw"))))
+ "1524yrni7gh0hir5ckridq671q5s6avfjdsdyahj51kzdl3wcypf"))))
(build-system gnu-build-system)
(native-inputs
`(("doxygen" ,doxygen)
diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm
index 950dbc55ff..74acd791ac 100644
--- a/gnu/packages/backup.scm
+++ b/gnu/packages/backup.scm
@@ -563,14 +563,13 @@ detection, and lossless compression.")
(define-public borg
(package
(name "borg")
- (version "1.1.11")
+ (version "1.1.13")
(source
(origin
(method url-fetch)
(uri (pypi-uri "borgbackup" version))
(sha256
- (base32
- "190gjzx83b6p64nqj840x382dgz9gfv0gm7wj585lnkrpa90j29n"))
+ (base32 "089q3flmwbz7dc28zlscwylf64kgck3jf1n6lqpwww8hlrk8cjhn"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -653,7 +652,8 @@ detection, and lossless compression.")
;; These tests assume the kernel supports FUSE.
"and not test_fuse "
"and not test_fuse_allow_damaged_files "
- "and not test_mount_hardlinks")))))
+ "and not test_mount_hardlinks "
+ "and not test_readonly_mount ")))))
(add-after 'install 'install-doc
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 3edb79d55b..6ae4273738 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1889,7 +1889,7 @@ statements in the module it tests.")
(define-public python-pylint
(package
(name "python-pylint")
- (version "2.5.2")
+ (version "2.5.3")
(source
(origin
(method git-fetch)
@@ -1898,8 +1898,7 @@ statements in the module it tests.")
(commit (string-append "pylint-" version))))
(file-name (git-file-name name version))
(sha256
- (base32
- "150x679mrlgm1s4ym7irf9mnsjilqyaakss4spc4pbrzkl11agnh"))))
+ (base32 "04cgbh2z1mygar63plzziyz34yg6bdr4i0g63jp256fgnqwb1bi3"))))
(build-system python-build-system)
;; FIXME: Tests are failing since version 2.4.3, see:
;; https://github.com/PyCQA/pylint/issues/3198.
diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm
index b74e73ceea..317136e38f 100644
--- a/gnu/packages/ci.scm
+++ b/gnu/packages/ci.scm
@@ -2,7 +2,7 @@
;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2016, 2017 Mathieu Lirzin <mthl@gnu.org>
-;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2017, 2020 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2017, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
;;;
@@ -47,8 +47,8 @@
#:use-module (guix build-system gnu))
(define-public cuirass
- (let ((commit "9559fd18d4b89bf797216fbe187f2b26b0a2d165")
- (revision "30"))
+ (let ((commit "2280ae18eb25aa7034636c58bf288c9bd5a8fa3b")
+ (revision "31"))
(package
(name "cuirass")
(version (git-version "0.0.1" revision commit))
@@ -60,7 +60,7 @@
(file-name (git-file-name name version))
(sha256
(base32
- "026cpcws8mb483mywwx2znpy9i7lw5n3lyqa9k6d87kxmw59060c"))))
+ "1gbmpwgiwy740d936b052gfivzw52pgrny7j7lbl56wi9wnawkc9"))))
(build-system gnu-build-system)
(arguments
'(#:modules ((guix build utils)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b27dd40871..7fa47aee1c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -75,6 +75,7 @@
#:use-module (gnu packages pcre)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages pulseaudio) ;libsndfile
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages statistics)
@@ -124,13 +125,13 @@ the system clipboards.")
(define-public r-ggpmisc
(package
(name "r-ggpmisc")
- (version "0.3.4")
+ (version "0.3.5")
(source (origin
(method url-fetch)
(uri (cran-uri "ggpmisc" version))
(sha256
(base32
- "0xc1yp0kphipq23ri4ij93garx1x2nrf4i0lhs6m10pp9yz7fbmj"))))
+ "0ma2d3a3v8n85sghxr9anl6vgbs8gi82i1dllw99n81gsm59wgin"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
@@ -138,13 +139,19 @@ the system clipboards.")
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-lubridate" ,r-lubridate)
+ ("r-magrittr" ,r-magrittr)
("r-mass" ,r-mass)
("r-plyr" ,r-plyr)
("r-polynom" ,r-polynom)
+ ("r-rlang" ,r-rlang)
+ ("r-scales" ,r-scales)
("r-splus2r" ,r-splus2r)
+ ("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-xts" ,r-xts)
("r-zoo" ,r-zoo)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://www.r4photobiology.info/")
(synopsis "Miscellaneous Extensions to @code{ggplot2}")
(description "This package provides extensions to @code{ggplot2},
@@ -253,14 +260,14 @@ information.")
(define-public r-ellipsis
(package
(name "r-ellipsis")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ellipsis" version))
(sha256
(base32
- "01z9gq311nzwv3a0sa49jhm5ylqd59srip4vjkrf23hzgb5i9y0b"))))
+ "1nvmkcca57d9067rcggw1gby80ibx5hplk2myz0cs9zwilaib2jg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rlang" ,r-rlang)))
@@ -596,24 +603,24 @@ the embedded @code{RapidXML} C++ library.")
(define-public r-modelr
(package
(name "r-modelr")
- (version "0.1.7")
+ (version "0.1.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "modelr" version))
(sha256
(base32
- "1nln33ajad0c917hmal4v6fbw8rncsch9xz5sifqfw6wgqjx9yy6"))))
+ "1i31nff7bqibk6r4hhd4j1vzwbyaf8493v0bjaagn36njmysfnw2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
- ("r-dplyr" ,r-dplyr)
("r-magrittr" ,r-magrittr)
("r-purrr" ,r-purrr)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
- ("r-tidyselect" ,r-tidyselect)))
+ ("r-tidyselect" ,r-tidyselect)
+ ("r-vctrs" ,r-vctrs)))
(home-page "https://github.com/tidyverse/modelr")
(synopsis "Helper functions for modelling in pipelines")
(description
@@ -624,13 +631,13 @@ into a pipeline of data manipulation and visualisation.")
(define-public r-httpuv
(package
(name "r-httpuv")
- (version "1.5.2")
+ (version "1.5.4")
(source (origin
(method url-fetch)
(uri (cran-uri "httpuv" version))
(sha256
(base32
- "13ax0hs2lc39ilznh1zarwqdzahcbhb8adilrfik3xg0fkljpcwk"))))
+ "066rprqvz9qln6xd85x1yh1wbbmzd157xjl8zq1zbgr8l6347inm"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
@@ -677,13 +684,13 @@ in systems and applications.")
(define-public r-servr
(package
(name "r-servr")
- (version "0.16")
+ (version "0.17")
(source (origin
(method url-fetch)
(uri (cran-uri "servr" version))
(sha256
(base32
- "106skz04iq4dkblr17idxsxfcfqic6rcaz8mahydkwjjppnhp5fc"))))
+ "0lxkjr7mwdk96cdpx66j92nn4w2vkgn2j2bbg7kd4238jsk9srs7"))))
(build-system r-build-system)
(propagated-inputs
`(("r-httpuv" ,r-httpuv)
@@ -1176,14 +1183,14 @@ Bootstrap themes, which are packaged for use with Shiny applications.")
(define-public r-d3r
(package
(name "r-d3r")
- (version "0.8.7")
+ (version "0.9.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "d3r" version))
(sha256
(base32
- "0xl3im76lp7pd5lhp8jfyqdm4j4zvjrx5a5fl81xv2cf7x3n4f2a"))))
+ "0vd1qk8yr18xdfkv5ybhqvf0mmccpi721wqa7c881nzm9nnlzc4y"))))
(build-system r-build-system)
(arguments
`(#:modules ((guix build utils)
@@ -1218,6 +1225,7 @@ Bootstrap themes, which are packaged for use with Shiny applications.")
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-htmltools" ,r-htmltools)
+ ("r-rlang" ,r-rlang)
("r-tidyr" ,r-tidyr)))
(native-inputs
`(("uglify-js" ,uglify-js)
@@ -1529,17 +1537,19 @@ including functions for geolocation and routing.")
(define-public r-haven
(package
(name "r-haven")
- (version "2.2.0")
+ (version "2.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "haven" version))
(sha256
(base32
- "0g9d6mxqmrw2zdms78jpx2sx73pczlyy771v1h5hmxqz9sqyk7hr"))))
+ "03cypgqhdkrfbfpl1yx2wb7flczrbak1w654wkicmd5ajwr9zvkf"))))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-forcats" ,r-forcats)
("r-hms" ,r-hms)
@@ -1547,7 +1557,8 @@ including functions for geolocation and routing.")
("r-rlang" ,r-rlang)
("r-readr" ,r-readr)
("r-tibble" ,r-tibble)
- ("r-tidyselect" ,r-tidyselect)))
+ ("r-tidyselect" ,r-tidyselect)
+ ("r-vctrs" ,r-vctrs)))
(home-page "https://haven.tidyverse.org")
(synopsis "Import and Export 'SPSS', 'Stata' and 'SAS' Files")
(description
@@ -1577,14 +1588,14 @@ component analysis (with robust methods, and parallelized functions).")
(define-public r-ape
(package
(name "r-ape")
- (version "5.3")
+ (version "5.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "ape" version))
(sha256
(base32
- "08wbk1kxhs32bmmvqlqanbdg1w235amd35k8m00fngsj9h9xzc08"))))
+ "0f74x9vx9sxpns2hlq4w2x80cd2gw42isfgncvs9pqbjf4hiyqnr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
@@ -1653,14 +1664,14 @@ colors are provided.")
(define-public r-glue
(package
(name "r-glue")
- (version "1.4.0")
+ (version "1.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "glue" version))
(sha256
(base32
- "1hb9j2519jv9zgkgjb25hnqi22i7zxnaksqd16m4nxa1f6gl0v7a"))))
+ "1j1va4vi3g9sl0cyjdwxvh5lvh10x8k9qvnsr9zyxddcbk9qgdpq"))))
(build-system r-build-system)
;; knitr depends on glue, so we can't add knitr here to build the
;; vignettes.
@@ -1799,17 +1810,19 @@ is configured appropriately so R can use them.")
(define-public r-pkgload
(package
(name "r-pkgload")
- (version "1.0.2")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "pkgload" version))
(sha256
(base32
- "0z7jvharafahi2gv5547mk1n499isjzw06kfwymmxc0gd575d1ii"))))
+ "03bv8xq4s6s7m34y1kjs99jzlb95vwrfi76mbnhmzcx2pc6ld78q"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-desc" ,r-desc)
+ `(("r-cli" ,r-cli)
+ ("r-crayon" ,r-crayon)
+ ("r-desc" ,r-desc)
("r-pkgbuild" ,r-pkgbuild)
("r-rlang" ,r-rlang)
("r-rprojroot" ,r-rprojroot)
@@ -1955,15 +1968,17 @@ ellipses, circles, cylinders, arrows, ...")
(define-public r-globaloptions
(package
(name "r-globaloptions")
- (version "0.1.1")
+ (version "0.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "GlobalOptions" version))
(sha256
- (base32 "0x89hfz80avq4zcskxl71i4zi0mgniqqxfrvz050aa2189wfyja2"))))
+ (base32 "0gkm77w6db9ajyncy1xdcivplap06a51zi99m009kylccschd2a7"))))
(properties `((upstream-name . "GlobalOptions")))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/jokergoo/GlobalOptions")
(synopsis "Generate functions to get or set global options")
(description
@@ -2080,21 +2095,24 @@ compare different dendrograms to one another.")
(define-public r-getoptlong
(package
(name "r-getoptlong")
- (version "0.1.8")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "GetoptLong" version))
(sha256
(base32
- "1l8xkvyl152bsyvxazsvx2sm1vkygn75x0lsg3sbg7xp6drdn3kc"))))
+ "1fswgy5j4xaipqs7nk7nzrl66vrchhxrk0w7hcsbyij3sxgn3z9j"))))
(properties `((upstream-name . "GetoptLong")))
(build-system r-build-system)
(inputs
`(("perl" ,perl)))
(propagated-inputs
- `(("r-globaloptions" ,r-globaloptions)
+ `(("r-crayon" ,r-crayon)
+ ("r-globaloptions" ,r-globaloptions)
("r-rjson" ,r-rjson)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/jokergoo/GetoptLong")
(synopsis "Parsing command-line arguments and variable interpolation")
(description
@@ -2240,14 +2258,14 @@ package also provides a C++ API, that works with or without Rcpp.")
(define-public r-ggally
(package
(name "r-ggally")
- (version "1.5.0")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "GGally" version))
(sha256
(base32
- "082s321zspg5al6acigwrhg4fsrmkkk5caabg662qbcy8v6n34h6"))))
+ "1gkmpzh1yvwvypkw0nwqv3gsf6za3220wig3rfv8g23kss60rl1s"))))
(properties `((upstream-name . "GGally")))
(build-system r-build-system)
(inputs
@@ -2255,11 +2273,13 @@ package also provides a C++ API, that works with or without Rcpp.")
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
("r-gtable" ,r-gtable)
+ ("r-lifecycle" ,r-lifecycle)
("r-plyr" ,r-plyr)
("r-progress" ,r-progress)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-reshape" ,r-reshape)
- ("r-rlang" ,r-rlang)))
+ ("r-rlang" ,r-rlang)
+ ("r-scales" ,r-scales)))
(home-page "https://ggobi.github.io/ggally")
(synopsis "Extension to ggplot2")
(description
@@ -2294,13 +2314,13 @@ most popular ones.")
(define-public r-sp
(package
(name "r-sp")
- (version "1.4-1")
+ (version "1.4-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "sp" version))
(sha256
- (base32 "0fbh865r4py89g6ln8bslig2vbxxwa642p5k5g02rskyhajg35lg"))))
+ (base32 "02jxsd30apzjbdbssirysq70d4svdwzn931jhxr0ladl72g9bqvk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -2653,19 +2673,20 @@ functions from LINPACK.")
(define-public r-fitdistrplus
(package
(name "r-fitdistrplus")
- (version "1.0-14")
+ (version "1.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "fitdistrplus" version))
(sha256
(base32
- "10q08wsv8v3w7797jdvvv60bgrf1bi6438wf0jcqv81ays82a245"))))
+ "1rnfnwmxa495fql7q0h9018cnwygwhj8gfh6ryz1vbf474570vjl"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
- ("r-npsurv" ,r-npsurv)
("r-survival" ,r-survival)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "http://riskassessment.r-forge.r-project.org")
(synopsis "Fitting a parametric distribution from data")
(description
@@ -2794,14 +2815,14 @@ contexts.")
(define-public r-squarem
(package
(name "r-squarem")
- (version "2020.2")
+ (version "2020.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "SQUAREM" version))
(sha256
(base32
- "1j6sa93xjvynnzx9jx79a3fysbykmbqyknknsqif5bcha6xp6cvf"))))
+ "17l05i87vwvcsk79fbg52zrx04zdlwiiyl3ga8qafs7mqx0j976q"))))
(properties `((upstream-name . "SQUAREM")))
(build-system r-build-system)
(home-page "https://coah.jhu.edu/people/Faculty_personal_Pages/Varadhan.html")
@@ -3448,14 +3469,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.")
(define-public r-jomo
(package
(name "r-jomo")
- (version "2.6-10")
+ (version "2.7-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "jomo" version))
(sha256
(base32
- "1k9l4290g350zbw1pjs871q9bxj3j2h1dilxpp06v4wy4n7d8qs0"))))
+ "0cdy9m4ylarkk9d0v1s61k2d877l4bbxly8a4jwhfy43fdvskz1w"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lme4" ,r-lme4)
@@ -3521,14 +3542,14 @@ analysis of multiply imputed data sets.")
(define-public r-mice
(package
(name "r-mice")
- (version "3.8.0")
+ (version "3.9.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mice" version))
(sha256
(base32
- "1ibybvigqkkla4xwhqs2w4m6c68alfcdsljx99nn4p92rzb1ig04"))))
+ "1wycbc2iqp68gfzvqx1gsn5n1k1h4bg79dy8m5msqf226hy83ncn"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
@@ -4168,13 +4189,13 @@ iVAT).")
(define-public r-xfun
(package
(name "r-xfun")
- (version "0.13")
+ (version "0.14")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
- (base32 "03iyqgx9mmdbd3qih70qzijjqcdg7k7ps5r1y6q8praanx9qvnm3"))))
+ (base32 "183f6d7lr116f90j37a8hfr6ni1x9xkqj79s8lnky1jwr6zj3ha9"))))
(build-system r-build-system)
;; knitr itself depends on xfun
#;
@@ -4231,14 +4252,14 @@ to variables on the left-hand side of the assignment.")
(define-public r-vctrs
(package
(name "r-vctrs")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "vctrs" version))
(sha256
(base32
- "0ay1fk05mk6cnpfbzqwx6pjxmjk3ipx5xx6k0sbh81r5bqj17vpn"))))
+ "025si8gqwsj79lna3s0hdzxmymjyzbjq3ddan7n6chah6n3kbrhp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
@@ -4316,14 +4337,14 @@ terminals.")
(define-public r-tinytex
(package
(name "r-tinytex")
- (version "0.22")
+ (version "0.23")
(source
(origin
(method url-fetch)
(uri (cran-uri "tinytex" version))
(sha256
(base32
- "0s9f62v3ps5f8903ar6kxlf1z3b4v78vlw1nb05bq55dgj8brg3b"))))
+ "084jd1m2i3zyxxlls7skq3jxv3b5cgps3yk60q1yzyy9sxslab7m"))))
(build-system r-build-system)
(propagated-inputs
`(("r-xfun" ,r-xfun)))
@@ -5519,14 +5540,14 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).")
(define-public r-arules
(package
(name "r-arules")
- (version "1.6-5")
+ (version "1.6-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "arules" version))
(sha256
(base32
- "0bcvfn8lvcv74vv9z3kgg7yq5hm7wjqhmzadi55cbm8zxd76g84v"))))
+ "1pk3jjizn2m5rwi7qkdkbq9f07acgpy0qdzzqmx0agg47cwahlkm"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@@ -5698,14 +5719,14 @@ simple method for converting between file types.")
(define-public r-maptools
(package
(name "r-maptools")
- (version "0.9-9")
+ (version "1.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "maptools" version))
(sha256
(base32
- "0v4llkxk8qs61vq4ykvaim4k23aagdaz0p62ns7zfq02sln3pfk9"))))
+ "0fs1y3cbymcq4f76wd27h5a7ihdmxii3ca8x29x32xgxhmasni4l"))))
(build-system r-build-system)
(propagated-inputs
`(("r-foreign" ,r-foreign)
@@ -5726,19 +5747,21 @@ exchanging spatial objects with other R packages.")
(define-public r-later
(package
(name "r-later")
- (version "1.0.0")
+ (version "1.1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "later" version))
(sha256
(base32
- "11xjavj7siz0xv2ffq1ld4bwl35jyrcfpvvs4p3ilpifxx49hyr7"))))
+ "1k9n2j7zxw9gfclnx8zfqp6w64c5d6apn7g02yhkajkpmszagfki"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
("r-rcpp" ,r-rcpp)
("r-rlang" ,r-rlang)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/r-lib/later")
(synopsis "Utilities for delaying function execution")
(description
@@ -5749,14 +5772,14 @@ time after the current time, after the R execution stack has emptied.")
(define-public r-promises
(package
(name "r-promises")
- (version "1.1.0")
+ (version "1.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "promises" version))
(sha256
(base32
- "01l0ydjvvy6afcg5d6pzvk1ikd3djq8n2flv8c831ksn68z0zsn8"))))
+ "002qkhcn3ri6a3w5fizjvdvrjgvqiw8i7rl9jglcnqik5kmwc61p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-later" ,r-later)
@@ -5764,6 +5787,8 @@ time after the current time, after the R execution stack has emptied.")
("r-r6" ,r-r6)
("r-rcpp" ,r-rcpp)
("r-rlang" ,r-rlang)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://rstudio.github.io/promises")
(synopsis "Abstractions for promise-based asynchronous programming")
(description
@@ -5938,14 +5963,14 @@ obtain a better initial configuration in non-metric MDS.")
(define-public r-reticulate
(package
(name "r-reticulate")
- (version "1.15")
+ (version "1.16")
(source
(origin
(method url-fetch)
(uri (cran-uri "reticulate" version))
(sha256
(base32
- "03dmnx9jhxx6vfbv2i5n6sln38kb9zkshz982pg3l9i4jjf3xns7"))))
+ "0ddx3xrlw55d8d3w7pxap618w2c5pd1n2jw4xsa185s8mf1zifkl"))))
(build-system r-build-system)
(inputs `(("python" ,python)))
(propagated-inputs
@@ -6135,14 +6160,14 @@ publication-ready plots.")
(define-public r-ellipse
(package
(name "r-ellipse")
- (version "0.4.1")
+ (version "0.4.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ellipse" version))
(sha256
(base32
- "0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"))))
+ "1wm5v7zdv2drgdba7z96jwsx74mqhlq80qgrvdb4vb5r02dcw68p"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/ellipse/")
(synopsis "Functions for drawing ellipses and ellipse-like confidence regions")
@@ -6437,14 +6462,14 @@ references and Rd files.")
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.9")
+ (version "0.3.11")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "0kp8rmab917zimnyc0rz37czf5f044z9naiyq0yxw68i990ikxf7"))))
+ "0nwasra2kb5wplcim7n57kynwhyg4vsk3fz42mbpm0hig1lzl9pp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
@@ -6554,14 +6579,14 @@ and tests them.")
(define-public r-overlap
(package
(name "r-overlap")
- (version "0.3.2")
+ (version "0.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "overlap" version))
(sha256
(base32
- "1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy"))))
+ "17cnr4qin1qy0df4k491267acna12gpbbps6w3gi8nccqxfrb1pd"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/overlap/")
(synopsis "Estimates of coefficient of overlapping for animal activity patterns")
@@ -6621,14 +6646,14 @@ other add-on packages.")
(define-public r-insight
(package
(name "r-insight")
- (version "0.8.3")
+ (version "0.8.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "insight" version))
(sha256
(base32
- "0lm5a4r368mq1pwmxjk2xnz25lb9j4v7mdkl1bahk2alklxgb8yj"))))
+ "0ggczjd112kclknyxxqvjkzwzazfhjwglchafzamk4zb08ww7y7k"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
@@ -6649,14 +6674,14 @@ information are missing.")
(define-public r-sjlabelled
(package
(name "r-sjlabelled")
- (version "1.1.4")
+ (version "1.1.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjlabelled" version))
(sha256
(base32
- "00dnrvwf7zbaq07hkh4rx24pvi5bwkl4npf6ycg101s63633dq5m"))))
+ "0grskmd7wrw31lkf85z6xz0bv246m6grvqkijvqi4q8zkl6p5vb3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)))
@@ -6675,14 +6700,14 @@ vice versa), or to deal with multiple declared missing values.")
(define-public r-sjmisc
(package
(name "r-sjmisc")
- (version "2.8.4")
+ (version "2.8.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjmisc" version))
(sha256
(base32
- "1ad7ca71w0v9ja4wb47aygczc987zz1lnjljhh2n497nzrpzzv64"))))
+ "0xl0s56d13bia89ai619rcr0fzbvc2k8f7hjxik4qp0g4v87zzlk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@@ -6755,14 +6780,14 @@ functions.")
(define-public r-flextable
(package
(name "r-flextable")
- (version "0.5.9")
+ (version "0.5.10")
(source
(origin
(method url-fetch)
(uri (cran-uri "flextable" version))
(sha256
(base32
- "1rkz0nhwjy1l8sb0kmna5v492n2ydnk7gydswnmf88r8vfyjczhw"))))
+ "1j7yvjiavar21ywck6nyz0p6bd66fnj99bq8lljdz4rrl3314yb8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
@@ -6773,6 +6798,7 @@ functions.")
("r-officer" ,r-officer)
("r-rlang" ,r-rlang)
("r-rmarkdown" ,r-rmarkdown)
+ ("r-uuid" ,r-uuid)
("r-xml2" ,r-xml2)))
(home-page "https://davidgohel.github.io/flextable")
(synopsis "Functions for tabular reporting")
@@ -6998,26 +7024,26 @@ the work.")
(define-public r-doby
(package
(name "r-doby")
- (version "4.6.5")
+ (version "4.6.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "doBy" version))
(sha256
(base32
- "1ckazh701b4ilg8bj17ji903538jmb49d997gm49ah5j5jc1x0g7"))))
+ "0wz1vmsf1545r1m42q88s675ncwvm8figjn7kzbngjn9aqck9qbq"))))
(properties `((upstream-name . "doBy")))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
("r-deriv" ,r-deriv)
- ("r-dplyr" ,r-dplyr)
("r-magrittr" ,r-magrittr)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
- ("r-plyr" ,r-plyr)
("r-pbkrtest" ,r-pbkrtest)
("r-tibble" ,r-tibble)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "http://people.math.aau.dk/~sorenh/software/doBy/")
(synopsis "Groupwise statistics, LSmeans, linear contrasts, and utilities")
(description
@@ -7460,13 +7486,13 @@ while providing the intuitive capabilities of @code{r-ggplot2}.")
(define-public r-mosaicdata
(package
(name "r-mosaicdata")
- (version "0.17.0")
+ (version "0.18.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mosaicData" version))
(sha256
- (base32 "04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9"))))
+ (base32 "0cx5dg26ha7nzkdyghkbbd6ikncj60qv1538az77lfgn2jylvkbz"))))
(properties `((upstream-name . "mosaicData")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/mosaicData/")
@@ -8490,14 +8516,14 @@ Hothorn, Westfall, 2010, CRC Press).")
(define-public r-emmeans
(package
(name "r-emmeans")
- (version "1.4.6")
+ (version "1.4.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
- "0mxk7ghlv4r6sna4897q1la2xgyn1dw3r9srhm9x4h5l4701avfa"))))
+ "0jh7l1rzsb2ihbnh4r4388kwm629z17rcapvdws1hnkklhr8j74k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
@@ -8588,18 +8614,20 @@ correlation, censored, ordered and multivariate problems.")
(define-public r-bayesplot
(package
(name "r-bayesplot")
- (version "1.7.1")
+ (version "1.7.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "bayesplot" version))
(sha256
(base32
- "0sq0ajnm96hmlqf1cv5n2gshh3qdij4n1zbm7qrniz2q6b5aj342"))))
+ "0aqy4bfjq1fmds0vpacsmqih528cp8wk4v4w0balzkph6zqzpwcl"))))
(build-system r-build-system)
(inputs
`(("pandoc" ,ghc-pandoc)
("pandoc-citeproc" ,ghc-pandoc-citeproc)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
@@ -8809,14 +8837,14 @@ results using @code{ggplot2}.")
(define-public r-effectsize
(package
(name "r-effectsize")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "effectsize" version))
(sha256
(base32
- "0kijp4wamkidaxysc11dd4vhvnm4wnbi87871wcbwn27k5b6i5dg"))))
+ "1n5b5434sd8f1v95bfjwg92v879rkaj8zpm6ldnrg0kgfb0gy6q4"))))
(properties `((upstream-name . "effectsize")))
(build-system r-build-system)
(propagated-inputs
@@ -8836,13 +8864,13 @@ conversion of indices such as Cohen's d, r, odds, etc.")
(define-public r-sjplot
(package
(name "r-sjplot")
- (version "2.8.3")
+ (version "2.8.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjPlot" version))
(sha256
- (base32 "0ip1rkjlhyf3axlc8qqss1qq1f0xrda890c1jmcbhm98wwjw264f"))))
+ (base32 "0b7k0mshkk8k26w11xbxkb5v0klhq279zn2xdz83cn8k791xkqyd"))))
(properties `((upstream-name . "sjPlot")))
(build-system r-build-system)
(propagated-inputs
@@ -10680,14 +10708,14 @@ the combination of non-negative and non-positive constraints.")
(define-public r-iso
(package
(name "r-iso")
- (version "0.0-18")
+ (version "0.0-18.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "Iso" version))
(sha256
(base32
- "014mm5b1f7i6nwlz3kyg1biph0y542kcx5bd13p68cv5a928qzid"))))
+ "0vy6jdyvp751430sf2f690yhasjr70cpk3p3lnaaxjq3fs5gg99g"))))
(properties `((upstream-name . "Iso")))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
@@ -10877,14 +10905,14 @@ preparing, executing, and processing HTTP requests.")
(define-public r-bigrquery
(package
(name "r-bigrquery")
- (version "1.3.0")
+ (version "1.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "bigrquery" version))
(sha256
(base32
- "0j8asipnb4fg4kk3apy37ywqq78ncmqh9wq015xpww2zb9shnbvf"))))
+ "0mq03sqv5lkyn3dlxvyd6lqqwnryfdaqh05pjvngzp194fxmd9cy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
@@ -10910,14 +10938,14 @@ preparing, executing, and processing HTTP requests.")
(define-public r-gmp
(package
(name "r-gmp")
- (version "0.5-13.6")
+ (version "0.6-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gmp" version))
(sha256
(base32
- "0j2sz2nw41y9306rl1b8hbn0spz7453z5iawcq0bvslyrhc1d9ir"))))
+ "1c9vpr6j6h5f6dm9l535nscl66rvr8sba5az2kswjhmzwb9xpjxc"))))
(build-system r-build-system)
(arguments
'(#:phases
@@ -11672,13 +11700,13 @@ But it can also be used to do data analysis for small scale data sets.")
(define-public r-cmprsk
(package
(name "r-cmprsk")
- (version "2.2-9")
+ (version "2.2-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "cmprsk" version))
(sha256
- (base32 "0xhgfg5b4i9skkaxp7gzkafgg5bqs5q1rp4hpw2jjmykg2nifn99"))))
+ (base32 "1xnx2zanw548prxsw2zw5cddkkg6kj97jgyzw67achq5mnsvfbg8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-survival" ,r-survival)))
@@ -12574,14 +12602,14 @@ probabilities from a standard bivariate normal CDF.")
(define-public r-lavaan
(package
(name "r-lavaan")
- (version "0.6-5")
+ (version "0.6-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "lavaan" version))
(sha256
(base32
- "04kvsh2m6mnzlhv83phr3hjzy4sx1ck6f7dgsm7xb8cs84dnxszy"))))
+ "0sfv58r2kxinax62bx6j3kkfx07qm16ddwf5qz392q33h9zs009h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
@@ -12950,14 +12978,14 @@ return the match results in tidy data frames.")
(define-public r-picante
(package
(name "r-picante")
- (version "1.8.1")
+ (version "1.8.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "picante" version))
(sha256
(base32
- "1b16zm8zjjsl181b8krkdcrbcw347kf772c4w7y5332qmfi7jhz0"))))
+ "19savjzj44b7ifdxcp02ynj22z4n4ikq2aipc74ljzy3yykmqmjn"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
@@ -13005,14 +13033,14 @@ can be used with function approximation, eligibility traces (Singh & Sutton,
(define-public r-lemon
(package
(name "r-lemon")
- (version "0.4.4")
+ (version "0.4.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "lemon" version))
(sha256
(base32
- "0m9hqwi709j9iwsxn8jh63741jiyr7ppwgqaw2zkv285p3m5wvd5"))))
+ "1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
@@ -13023,6 +13051,8 @@ can be used with function approximation, eligibility traces (Singh & Sutton,
("r-plyr" ,r-plyr)
("r-rlang" ,r-rlang)
("r-scales" ,r-scales)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/stefanedwards/lemon")
(synopsis "Freshen up your ggplot2 plots")
(description
@@ -13623,13 +13653,13 @@ either PDF/EPS files.")
(define-public r-polspline
(package
(name "r-polspline")
- (version "1.1.18")
+ (version "1.1.19")
(source
(origin
(method url-fetch)
(uri (cran-uri "polspline" version))
(sha256
- (base32 "00h1xg89wncfj2nk68zv7vphfcc68s7k0l5s9511bzxz8khhw9fz"))))
+ (base32 "0rhzf735hmbqfn2xbgcln4sqx7m9far72g5gq9mghgkw016kqglm"))))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://cran.r-project.org/web/packages/polspline/")
@@ -13643,20 +13673,23 @@ lspec, polyclass, and polymars.")
(define-public r-rms
(package
(name "r-rms")
- (version "5.1-4")
+ (version "6.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "rms" version))
(sha256
- (base32 "19knh1sw0icw6jh9wfb2hq5jf49i2qfvp9myvqm5paa495689x9q"))))
+ (base32 "0m88m63d19qz03x8v56h4rrblln3d2943spi1v4wxxnbcdk22np9"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-ggplot2" ,r-ggplot2)
+ `(("r-cluster" ,r-cluster)
+ ("r-digest" ,r-digest)
+ ("r-ggplot2" ,r-ggplot2)
("r-hmisc" ,r-hmisc)
("r-htmltable" ,r-htmltable)
("r-htmltools" ,r-htmltools)
("r-lattice" ,r-lattice)
+ ("r-mass" ,r-mass)
("r-multcomp" ,r-multcomp)
("r-nlme" ,r-nlme)
("r-polspline" ,r-polspline)
@@ -13878,13 +13911,13 @@ SELECT or UPDATE queries to an end-point.")
(define-public r-bookdown
(package
(name "r-bookdown")
- (version "0.18")
+ (version "0.19")
(source (origin
(method url-fetch)
(uri (cran-uri "bookdown" version))
(sha256
(base32
- "1my6g16phx21v5cvfqcnjibh3zcv02xkix347aafd6a7r3hnxpq5"))))
+ "137l0cyzw9ij2l3zyk3mm1k2db9vhbax6c9y4rydvh4i9gka5vlq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
@@ -14272,20 +14305,22 @@ the XKCD web comic.")
(define-public r-msigdbr
(package
(name "r-msigdbr")
- (version "7.0.1")
+ (version "7.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "msigdbr" version))
(sha256
(base32
- "19p8z617m3my8la7n1qgb1s2msf940r372im3q30qkbcx3qxg3sd"))))
+ "0jvi49qa7616s58p0rx66pcw7h12rc8kgcg9225jk7pc3934hnzh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-magrittr" ,r-magrittr)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/igordot/msigdbr")
(synopsis "MSigDB gene sets for multiple organisms")
(description
@@ -14512,14 +14547,14 @@ that fills this gap.")
(define-public r-europepmc
(package
(name "r-europepmc")
- (version "0.3")
+ (version "0.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "europepmc" version))
(sha256
(base32
- "1ngqs1sqzkbwv98dd5z4cxj8bnz41wyd0g060a2vpqi3s99s4i2h"))))
+ "174nnyc2mbgqxb5kgqabn1vf71c2mps7ig2bclq4is0f7nb64pym"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@@ -14528,8 +14563,13 @@ that fills this gap.")
("r-plyr" ,r-plyr)
("r-progress" ,r-progress)
("r-purrr" ,r-purrr)
+ ("r-rlang" ,r-rlang)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
("r-urltools" ,r-urltools)
("r-xml2" ,r-xml2)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/ropensci/europepmc/")
(synopsis "R Interface to the Europe PubMed Central RESTful Web Service")
(description
@@ -14547,14 +14587,14 @@ databases, including ENA, PDB or ChEMBL are also accessible.")
(define-public r-ggraph
(package
(name "r-ggraph")
- (version "2.0.2")
+ (version "2.0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggraph" version))
(sha256
(base32
- "1ckq82hg52vr2wydkqv2wrppgjyvddd6bwqzrngqlm7j71xapjl0"))))
+ "1pz06j0za4p6dc3fqjzcw8bpym70bmnfcvpv1q34r74rnwzjdyvq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
@@ -15806,14 +15846,14 @@ path of values for the regularization parameter.")
(define-public r-rhpcblasctl
(package
(name "r-rhpcblasctl")
- (version "0.20-17")
+ (version "0.20-137")
(source
(origin
(method url-fetch)
(uri (cran-uri "RhpcBLASctl" version))
(sha256
(base32
- "0iwc06blr5sx7rylwczi2jrha8sk8qs0jklflwpidl0zj1jxdggp"))))
+ "0vv144sgjhf7fazk633i16fc06g9k43syyxj1g34pi9gsgdcn0nv"))))
(properties `((upstream-name . "RhpcBLASctl")))
(build-system r-build-system)
(home-page "https://prs.ism.ac.jp/~nakama/Rhpc/")
@@ -16077,14 +16117,14 @@ both R code and compiled C/C++/FORTRAN code.")
(define-public r-systemfonts
(package
(name "r-systemfonts")
- (version "0.2.1")
+ (version "0.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "systemfonts" version))
(sha256
(base32
- "0dna00xai0pw76b4830yy4r5j1hq7f7kla67v0iz39cjm4rq4ygq"))))
+ "0wf62mfam5zlrck0wrdbyi4hi7pn5j0739rihgp8sj2cjypm2lnb"))))
(properties `((upstream-name . "systemfonts")))
(build-system r-build-system)
(inputs
@@ -16223,14 +16263,14 @@ in pipelines.")
(define-public r-parameters
(package
(name "r-parameters")
- (version "0.6.1")
+ (version "0.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "parameters" version))
(sha256
(base32
- "0mylxkf1y6mk4kf6c57x102sf4c800pfasjcfbf1hnsh6ya0m6dy"))))
+ "1cmb2hc6f4qdx9aj586zhllckzs6s5sznbqrywvgmhp6a2saaqax"))))
(properties `((upstream-name . "parameters")))
(build-system r-build-system)
(propagated-inputs
@@ -16252,13 +16292,13 @@ effect size.")
(define-public r-rgdal
(package
(name "r-rgdal")
- (version "1.4-8")
+ (version "1.5-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "rgdal" version))
(sha256
- (base32 "1jd691amf3ghznq5im15gvhl6v6k25klpl75m4ngrqf9xlxaa3as"))))
+ (base32 "02z7rhpizzmymiqpi90nm15bjdz0411bqlavlk0lhwxb42ilhif6"))))
(properties `((upstream-name . "rgdal")))
(build-system r-build-system)
(inputs
@@ -16268,7 +16308,8 @@ effect size.")
(propagated-inputs
`(("r-sp" ,r-sp)))
(native-inputs
- `(("pkg-config" ,pkg-config)))
+ `(("pkg-config" ,pkg-config)
+ ("r-knitr" ,r-knitr)))
(home-page "http://rgdal.r-forge.r-project.org")
(synopsis "Bindings for the Geospatial Data Abstraction Library")
(description
@@ -16759,14 +16800,14 @@ simulation.")
(define-public r-abcrlda
(package
(name "r-abcrlda")
- (version "1.0.2")
+ (version "1.0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "abcrlda" version))
(sha256
(base32
- "0zjdrbg3zx0znqnh0dvmifs9c12b8vjhbaf3nbwab9xh25nsmg75"))))
+ "04pcdnk2szfpc2ylcw5ds7y895ivy03bycal03kxw7cwylzxasks"))))
(properties `((upstream-name . "abcrlda")))
(build-system r-build-system)
(home-page "https://ieeexplore.ieee.org/document/8720003/")
@@ -16895,14 +16936,14 @@ into R, in order to support other packages.")
(define-public r-showtextdb
(package
(name "r-showtextdb")
- (version "2.0")
+ (version "3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "showtextdb" version))
(sha256
(base32
- "1qwwj9x2jvadvwn60h75k99c9xi7yhqjsgaakahz5paxgj583bsh"))))
+ "0hlnc3fhgrdkd46n7hb6id0gg1v0bf8s4679nrr7rchyp455szq2"))))
(properties `((upstream-name . "showtextdb")))
(build-system r-build-system)
(propagated-inputs
@@ -16917,14 +16958,14 @@ package.")
(define-public r-showtext
(package
(name "r-showtext")
- (version "0.8")
+ (version "0.8-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "showtext" version))
(sha256
(base32
- "15v90s061iz9i655xin7kqb6ahnski55pgz3329wcz60bnbjb82x"))))
+ "1n1cd9f4zrv45k5953akclqh1jh7fy122dqkgmbfi5h122v6p2h0"))))
(properties `((upstream-name . "showtext")))
(build-system r-build-system)
(inputs
@@ -17246,14 +17287,14 @@ data.")
(define-public r-elasticnet
(package
(name "r-elasticnet")
- (version "1.1.1")
+ (version "1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "elasticnet" version))
(sha256
(base32
- "0p9dplnsp28z4s2fl6afbwrgd0aj339fak8mmndicmrh7bb7rpmb"))))
+ "0nxcw06d0cp2mbqzg2fm9yys5xm6xx7bfcfvr0avcs8afkvz29j8"))))
(properties `((upstream-name . "elasticnet")))
(build-system r-build-system)
(propagated-inputs
@@ -17865,16 +17906,18 @@ transcription, ...")
(define-public r-seewave
(package
(name "r-seewave")
- (version "2.1.5")
+ (version "2.1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "seewave" version))
(sha256
(base32
- "1qg8f5gik9pw6f9mcxqmrc9x3003s8vdm6g01pjjpyc9qaqiz2vi"))))
+ "123h3q0gps0vy9sikr7gjphnv9m3l4h4mykiydjllmrpaw1s1844"))))
(properties `((upstream-name . "seewave")))
(build-system r-build-system)
+ (inputs
+ `(("libsndfile" ,libsndfile)))
(propagated-inputs
`(("r-tuner" ,r-tuner)))
(home-page "http://rug.mnhn.fr/seewave")
@@ -18266,14 +18309,14 @@ allowed.")
(define-public r-gdina
(package
(name "r-gdina")
- (version "2.7.9")
+ (version "2.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "GDINA" version))
(sha256
(base32
- "13pmj069r04h38hg61ibyn1ab15zdy9m0qv60vi25ahgsmg6ccvx"))))
+ "0chxnhp37xfd78gafkgwqrmc0jf3pvpdyrkc438kl0l53fb7dld7"))))
(properties `((upstream-name . "GDINA")))
(build-system r-build-system)
(propagated-inputs
@@ -18624,14 +18667,14 @@ API; see the package vignette for details.")
(define-public r-actuar
(package
(name "r-actuar")
- (version "2.3-3")
+ (version "3.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "actuar" version))
(sha256
(base32
- "0aw3hlan5y22mdqk1wvnw9ksqhwp4yy5hi0dpv21p7s0hyxhphih"))))
+ "0dkp1sczldzy7kj70qvh1q59jhsq1brjybmxdz43jnx63y45llpz"))))
(properties `((upstream-name . "actuar")))
(build-system r-build-system)
(propagated-inputs `(("r-expint" ,r-expint)))
@@ -19364,21 +19407,22 @@ automatically show a loader when the output is (re)calculating.")
(define-public r-rsvg
(package
(name "r-rsvg")
- (version "2.0")
+ (version "2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rsvg" version))
(sha256
(base32
- "0r066lvyfvhsjjpiad259f1m3qk5w7hxhbyjzhlryzf3fy0hvh29"))))
+ "0bxnwa9sbzx6jlxrzh3ymjq81vkxil2qx7kk7wp13a0cql7dhxcn"))))
(properties `((upstream-name . "rsvg")))
(build-system r-build-system)
(inputs
`(("librsvg" ,librsvg)
("zlib" ,zlib)))
(native-inputs
- `(("pkg-config" ,pkg-config)))
+ `(("pkg-config" ,pkg-config)
+ ("r-knitr" ,r-knitr)))
(home-page "https://github.com/jeroen/rsvg#readme")
(synopsis "Render SVG images into PDF, PNG, PostScript, or Bitmap arrays")
(description
@@ -19420,14 +19464,14 @@ OpenMP.")
(define-public r-emplik
(package
(name "r-emplik")
- (version "1.0-4.3")
+ (version "1.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "emplik" version))
(sha256
(base32
- "1g4hz85bvw29c77zs0ig487z92jjl682vv457x81l077h0psvk7c"))))
+ "1kw8g8j075bsicdvgkjf4870rfv5c30gvmw6qkkaz3ki22x74w77"))))
(properties `((upstream-name . "emplik")))
(build-system r-build-system)
(propagated-inputs
@@ -20100,14 +20144,14 @@ actuarial models such as pension mathematics.")
(define-public r-sem
(package
(name "r-sem")
- (version "3.1-9")
+ (version "3.1-11")
(source
(origin
(method url-fetch)
(uri (cran-uri "sem" version))
(sha256
(base32
- "1f9c6g6pfx66gd2pappcsqh484ah6a0x4z47hpd46rah0817hcsa"))))
+ "03j3ig6fy34pi6nwfq9w8f5m555lilw5skr1vn6ay4yvjmvavc9k"))))
(properties `((upstream-name . "sem")))
(build-system r-build-system)
(propagated-inputs
@@ -20127,14 +20171,14 @@ least squares.")
(define-public r-semtools
(package
(name "r-semtools")
- (version "0.5-2")
+ (version "0.5-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "semTools" version))
(sha256
(base32
- "1zj841pszfsikzp82cmh463qyc4xhdrqjqcnhc2r8mcflv12irv6"))))
+ "0k3w10fnq0l89inhxvnypyrfhlrm921mfn0kwyyfpndvbqizky1d"))))
(properties `((upstream-name . "semTools")))
(build-system r-build-system)
(propagated-inputs
@@ -20176,17 +20220,20 @@ perform @dfn{exploratory mediation} (XMed).")
(define-public r-stanheaders
(package
(name "r-stanheaders")
- (version "2.19.2")
+ (version "2.21.0-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "StanHeaders" version))
(sha256
(base32
- "0cmk0fzczx7dcywcw1dhm6gfq84qlsx77qrsk4z3bf3dhr4bznam"))))
+ "1zyph2x47x9a5baj5d79a1lzj7gajirisajvkrcngrjvw8bq7810"))))
(properties `((upstream-name . "StanHeaders")))
(build-system r-build-system)
(inputs `(("pandoc" ,ghc-pandoc)))
+ (propagated-inputs
+ `(("r-rcppeigen" ,r-rcppeigen)
+ ("r-rcppparallel" ,r-rcppparallel)))
(native-inputs
`(("gfortran" ,gfortran)
("r-knitr" ,r-knitr))) ; for vignettes
@@ -20244,14 +20291,14 @@ Complete access to optimized C functions is made available with
(define-public r-openmx
(package
(name "r-openmx")
- (version "2.17.3")
+ (version "2.17.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "OpenMx" version))
(sha256
(base32
- "1s2pcg281ag3qz2wz8yi826f2d3kj3qg916js7zz0nsrljcyv5bc"))))
+ "07y4w7xdb63p5kkrj6sdx1kabbsgbbj7nw9hc690jy84r15aryal"))))
(properties `((upstream-name . "OpenMx")))
(build-system r-build-system)
(propagated-inputs
@@ -21194,15 +21241,17 @@ and an overall emphasis on typography.")
(define-public r-crochet
(package
(name "r-crochet")
- (version "2.2.0")
+ (version "2.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "crochet" version))
(sha256
(base32
- "1cbv79nyycxk6f8ldcsnn2pvgxqlnrj0qs19nhafnq2clxy863k6"))))
+ "0zvjaf6cv0nrjb4l4llkr0mmgha7ig31p4ri2rlnqyjlxi5l8hyq"))))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/agrueneberg/crochet")
(synopsis "Implementation Helper for Matrix-Like Types")
(description
@@ -21730,14 +21779,14 @@ included in this package as well.")
(define-public r-brms
(package
(name "r-brms")
- (version "2.12.0")
+ (version "2.13.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "brms" version))
(sha256
(base32
- "1699lwkklfhjz7fddawlig552g2zvrc34mqwrzqjgl35r9fm08gs"))))
+ "0vdncdawxawi16f326qrgy9jjjipmqdjxh741y9p7xdzd4fwaxx3"))))
(properties `((upstream-name . "brms")))
(build-system r-build-system)
(propagated-inputs
diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm
index 1f59d4def1..f4b0688e8d 100644
--- a/gnu/packages/crates-io.scm
+++ b/gnu/packages/crates-io.scm
@@ -27484,22 +27484,20 @@ to XDG Base Directory specification")
(define-public rust-yaml-rust-0.4
(package
(name "rust-yaml-rust")
- (version "0.4.3")
+ (version "0.4.4")
(source
(origin
(method url-fetch)
(uri (crate-uri "yaml-rust" version))
- (file-name
- (string-append name "-" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
- (base32
- "0ka3qhqc5lvk3hz14wmsj32jhmh44blcbfrx5hfxli2gg38kv4k5"))))
+ (base32 "038byay0dxsz6isckviz4qshfpyjqmyvda7pq96i6d53y4ickw1r"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-linked-hash-map" ,rust-linked-hash-map-0.5))
#:cargo-development-inputs
- (("rust-quickcheck" ,rust-quickcheck-0.7))))
+ (("rust-quickcheck" ,rust-quickcheck-0.9))))
(home-page "https://chyh1990.github.io/yaml-rust/")
(synopsis "The missing YAML 1.2 parser for rust")
(description
diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm
index ccf1c2875f..99b23b7b7e 100644
--- a/gnu/packages/crypto.scm
+++ b/gnu/packages/crypto.scm
@@ -1031,7 +1031,7 @@ quickly by using all your CPU cores and hardware acceleration.")
(define-public minisign
(package
(name "minisign")
- (version "0.8")
+ (version "0.9")
(source
(origin
(method url-fetch)
@@ -1039,8 +1039,7 @@ quickly by using all your CPU cores and hardware acceleration.")
(string-append "https://github.com/jedisct1/minisign/releases/download/"
version "/minisign-" version ".tar.gz"))
(sha256
- (base32
- "10hhgwxf9rcdlr00shrkcyxndrc22dh5lj8k5z27xg3nc0jba3hk"))))
+ (base32 "1h9cfvvm6lqq33b2wdar1x3w4k7zyrscavllyb0l5dmcdabq60r2"))))
(build-system cmake-build-system)
(arguments
; No test suite
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 78b98d82af..bab4b4d128 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -88,7 +88,9 @@
#:use-module (gnu packages language)
#:use-module (gnu packages libevent)
#:use-module (gnu packages linux)
+ #:use-module (gnu packages logging)
#:use-module (gnu packages man)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages parallel)
@@ -98,6 +100,7 @@
#:use-module (gnu packages perl-web)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages popt)
+ #:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
@@ -105,6 +108,8 @@
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rdf)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages regex)
+ #:use-module (gnu packages rpc)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
#:use-module (gnu packages sphinx)
@@ -1142,7 +1147,7 @@ including field and record folding.")))
(define-public rocksdb
(package
(name "rocksdb")
- (version "6.8.1")
+ (version "6.10.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1151,7 +1156,7 @@ including field and record folding.")))
(file-name (git-file-name name version))
(sha256
(base32
- "0i6qglyrcqwxnrvq67zm7ln79a4sj8mzgij9h0nz5zkxax8v1zg1"))
+ "0rp8q73dx5f1nkcf2qp6fljm4dpj281y6cqckqgv976kvwvqdgz1"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1748,14 +1753,14 @@ libmysqlclient. It will fill an aray with long options, ready to be parsed by
(define-public perl-sql-abstract
(package
(name "perl-sql-abstract")
- (version "1.86")
+ (version "1.87")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
"SQL-Abstract-" version ".tar.gz"))
(sha256
- (base32 "1pwcm8hwxcgidyyrak37lx69d85q728jxsb0b14jz93gbvdgg9z7"))))
+ (base32 "0jhw91b23wc9bkfwcgvka4x5ddxk58m9bcp5ay7a3vx77nla09p9"))))
(build-system perl-build-system)
(native-inputs
`(("perl-module-install" ,perl-module-install)
@@ -3216,20 +3221,22 @@ Monitor read/write activity on a mongo server
@end table")
(license license:asl2.0)))
+;; There are many wrappers for this in other languages. When touching, please
+;; be sure to ensure all dependencies continue to build.
(define-public apache-arrow
(package
(name "apache-arrow")
- (version "0.10.0")
+ (version "0.17.1")
(source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow")
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/apache/arrow")
+ (commit (string-append "apache-arrow-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02r6yx3yhywzikd3b0vfkjgddhfiriyx2vpm3jf5880wq59x798a"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f
@@ -3242,91 +3249,135 @@ Monitor read/write activity on a mongo server
(setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
(setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
(setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs "flatbuffers"))
- (setenv "JEMALLOC_HOME" (assoc-ref %build-inputs "jemalloc"))
(setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson"))
#t)))
#:build-type "Release"
#:configure-flags
(list "-DARROW_PYTHON=ON"
-
- ;; Install to PREFIX/lib (the default is
- ;; PREFIX/lib64).
- (string-append "-DCMAKE_INSTALL_LIBDIR="
- (assoc-ref %outputs "out")
+ "-DARROW_GLOG=ON"
+ ;; Parquet options
+ "-DARROW_PARQUET=ON"
+ "-DPARQUET_BUILD_EXECUTABLES=ON"
+ ;; The maintainers disallow using system versions of
+ ;; jemalloc:
+ ;; https://issues.apache.org/jira/browse/ARROW-3507. This
+ ;; is unfortunate because jemalloc increases performance:
+ ;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
+ "-DARROW_JEMALLOC=OFF"
+
+ ;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
+ ;; option that instructs the build system how to resolve
+ ;; each dependency. SYSTEM = Finding the dependency in
+ ;; system paths using CMake's built-in find_package
+ ;; function, or using pkg-config for packages that do not
+ ;; have this feature
+ "-DARROW_DEPENDENCY_SOURCE=SYSTEM"
+
+ ;; Split output into its component packages.
+ (string-append "-DCMAKE_INSTALL_PREFIX="
+ (assoc-ref %outputs "lib"))
+ (string-append "-DCMAKE_INSTALL_RPATH="
+ (assoc-ref %outputs "lib")
"/lib")
-
- ;; XXX These Guix package offer static
- ;; libraries that are not position independent,
- ;; and ld fails to link them into the arrow .so
- "-DARROW_WITH_SNAPPY=OFF"
- "-DARROW_WITH_ZLIB=OFF"
- "-DARROW_WITH_ZSTD=OFF"
- "-DARROW_WITH_LZ4=OFF"
+ (string-append "-DCMAKE_INSTALL_BINDIR="
+ (assoc-ref %outputs "out")
+ "/bin")
+ (string-append "-DCMAKE_INSTALL_INCLUDEDIR="
+ (assoc-ref %outputs "include")
+ "/share/include")
+
+
+ "-DARROW_WITH_SNAPPY=ON"
+ "-DARROW_WITH_ZLIB=ON"
+ "-DARROW_WITH_ZSTD=ON"
+ "-DARROW_WITH_LZ4=ON"
+ "-DARROW_COMPUTE=ON"
+ "-DARROW_CSV=ON"
+ "-DARROW_DATASET=ON"
+ "-DARROW_FILESYSTEM=ON"
+ "-DARROW_HDFS=ON"
+ "-DARROW_JSON=ON"
+ ;; Arrow Python C++ integration library (required for
+ ;; building pyarrow). This library must be built against
+ ;; the same Python version for which you are building
+ ;; pyarrow. NumPy must also be installed. Enabling this
+ ;; option also enables ARROW_COMPUTE, ARROW_CSV,
+ ;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
+ ;; ARROW_JSON.
+ "-DARROW_PYTHON=ON"
;; Building the tests forces on all the
;; optional features and the use of static
;; libraries.
"-DARROW_BUILD_TESTS=OFF"
+ "-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
+ ;;"-DBENCHMARK_ENABLE_TESTING=OFF"
"-DARROW_BUILD_STATIC=OFF")))
(inputs
`(("boost" ,boost)
- ("rapidjson" ,rapidjson)
("brotli" ,google-brotli)
- ("flatbuffers" ,flatbuffers)
- ("jemalloc" ,jemalloc)
+ ("double-conversion" ,double-conversion)
+ ("snappy" ,snappy)
+ ("gflags" ,gflags)
+ ("glog" ,glog)
+ ("apache-thrift" ,apache-thrift "lib")
+ ("protobuf" ,protobuf)
+ ("rapidjson" ,rapidjson)
+ ("zlib" ,zlib)
+ ("bzip2" ,bzip2)
+ ("lz4" ,lz4)
+ ("zstd" ,zstd "lib")
+ ("re2" ,re2)
+ ("grpc" ,grpc)
("python-3" ,python)
("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (outputs '("out" "lib" "include"))
(home-page "https://arrow.apache.org/")
(synopsis "Columnar in-memory analytics")
(description "Apache Arrow is a columnar in-memory analytics layer
-designed to accelerate big data. It houses a set of canonical in-memory
+designed to accelerate big data. It houses a set of canonical in-memory
representations of flat and hierarchical data along with multiple
-language-bindings for structure manipulation. It also provides IPC and common
+language-bindings for structure manipulation. It also provides IPC and common
algorithm implementations.")
(license license:asl2.0)))
(define-public python-pyarrow
(package
+ (inherit apache-arrow)
(name "python-pyarrow")
- (version "0.10.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow")
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
(build-system python-build-system)
(arguments
- '(#:tests? #f ; XXX There are no tests in the "python" directory
+ '(#:tests? #f ; XXX There are no tests in the "python" directory
#:phases
(modify-phases %standard-phases
(delete 'build) ; XXX the build is performed again during the install phase
(add-after 'unpack 'enter-source-directory
(lambda _ (chdir "python") #t))
- (add-after 'unpack 'set-env
+ (add-after 'unpack 'make-git-checkout-writable
(lambda _
- (setenv "ARROW_HOME" (assoc-ref %build-inputs "apache-arrow"))
+ (for-each make-file-writable (find-files "."))
#t)))))
(propagated-inputs
- `(("apache-arrow" ,apache-arrow)
+ `(("apache-arrow" ,apache-arrow "lib")
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-six" ,python-six)))
(native-inputs
`(("cmake" ,cmake-minimal)
+ ("pkg-config" ,pkg-config)
("python-cython" ,python-cython)
("python-pytest" ,python-pytest)
("python-pytest-runner" ,python-pytest-runner)
("python-setuptools-scm" ,python-setuptools-scm)))
+ (outputs '("out"))
(home-page "https://arrow.apache.org/docs/python/")
(synopsis "Python bindings for Apache Arrow")
- (description "This library provides a Pythonic API wrapper for the reference
-Arrow C++ implementation, along with tools for interoperability with pandas,
-NumPy, and other traditional Python scientific computing packages.")
+ (description
+ "This library provides a Pythonic API wrapper for the reference Arrow C++
+implementation, along with tools for interoperability with pandas, NumPy, and
+other traditional Python scientific computing packages.")
(license license:asl2.0)))
(define-public python2-pyarrow
diff --git a/gnu/packages/dhall.scm b/gnu/packages/dhall.scm
index bbe2d271d7..c0776902e7 100644
--- a/gnu/packages/dhall.scm
+++ b/gnu/packages/dhall.scm
@@ -1,4 +1,5 @@
;;; Copyright © 2020 John Soo <jsoo1@asu.edu>
+;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -29,18 +30,14 @@
(define-public dhall
(package
(name "dhall")
- (version "1.31.1")
+ (version "1.32.0")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://hackage.haskell.org/package/dhall/dhall-"
- version
- ".tar.gz"))
+ (uri (string-append "https://hackage.haskell.org/package/dhall/dhall-"
+ version ".tar.gz"))
(sha256
- (base32
- "18v7vvcbcm9s7slh6h43rj9yakkkxwnwgj6kv84i6qzd2j7d80mc"))
- (patches (search-patches "dhall-remove-network-tests.patch"))))
+ (base32 "1imj0bh5365pdizvjbw2wqz0g9hakigf1zm4fr6379qdchxpp90p"))))
(build-system haskell-build-system)
(inputs
`(("ghc-aeson" ,ghc-aeson)
@@ -56,6 +53,7 @@
("ghc-dotgen" ,ghc-dotgen)
("ghc-either" ,ghc-either)
("ghc-exceptions" ,ghc-exceptions)
+ ("ghc-half" ,ghc-half)
("ghc-hashable" ,ghc-hashable)
("ghc-lens-family-core" ,ghc-lens-family-core)
("ghc-megaparsec" ,ghc-megaparsec)
@@ -99,9 +97,23 @@
(arguments
`(#:phases
(modify-phases %standard-phases
- ;; Remove tests that require network
- (add-after 'unpack 'remove-more-tests
+ (add-after 'unpack 'remove-network-tests
(lambda _
+ (with-directory-excursion "dhall-lang/tests"
+ (for-each
+ delete-file
+ '("import/failure/referentiallyInsane.dhall"
+ "import/success/customHeadersA.dhall"
+ "import/success/noHeaderForwardingA.dhall"
+ "import/success/unit/RemoteAsTextA.dhall"
+ "import/success/unit/SimpleRemoteA.dhall"
+ "import/success/unit/asLocation/RemoteChain1A.dhall"
+ "import/success/unit/asLocation/RemoteChain2A.dhall"
+ "import/success/unit/asLocation/RemoteChain3A.dhall"
+ "import/success/unit/asLocation/RemoteChainEnvA.dhall"
+ "import/success/unit/asLocation/RemoteChainMissingA.dhall"
+ "type-inference/success/CacheImportsA.dhall"
+ "type-inference/success/CacheImportsCanonicalizeA.dhall")))
(substitute* "src/Dhall/Tutorial.hs"
(((string-append
"-- >>> input auto "
@@ -117,10 +129,8 @@
"examples/True\" :: IO Bool"))
""))
#t)))))
- (home-page
- "https://dhall-lang.org/")
- (synopsis
- "Configuration language guaranteed to terminate")
+ (home-page "https://dhall-lang.org/")
+ (synopsis "Configuration language guaranteed to terminate")
(description
"Dhall is an explicitly typed configuration language that is not Turing
complete. Despite being Turing incomplete, Dhall is a real programming
diff --git a/gnu/packages/dictionaries.scm b/gnu/packages/dictionaries.scm
index c13dbc2454..aee8799c98 100644
--- a/gnu/packages/dictionaries.scm
+++ b/gnu/packages/dictionaries.scm
@@ -205,14 +205,14 @@ It comes with a German-English dictionary with approximately 270,000 entries.")
(define-public grammalecte
(package
(name "grammalecte")
- (version "1.9.0")
+ (version "1.10.0")
(source
(origin
(method url-fetch/zipbomb)
(uri (string-append "https://grammalecte.net/grammalecte/zip/"
"Grammalecte-fr-v" version ".zip"))
(sha256
- (base32 "1dmbmvf27dy0cnq2x7ldp9xmni8fl1p7vflgpy0yrgifgrjvnxzr"))))
+ (base32 "0lyngnvg995qdm9bhqj8vd8aywpcdqmzv3j4j77wxhsfa9k0pz08"))))
(build-system python-build-system)
(home-page "https://grammalecte.net")
(synopsis "French spelling and grammar checker")
diff --git a/gnu/packages/djvu.scm b/gnu/packages/djvu.scm
index 1fb5b5267e..f5ea9bd332 100644
--- a/gnu/packages/djvu.scm
+++ b/gnu/packages/djvu.scm
@@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -22,7 +23,9 @@
#:use-module (guix utils)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix git-download)
#:use-module (guix build-system gnu)
+ #:use-module (gnu packages autotools)
#:use-module (gnu packages glib)
#:use-module (gnu packages image)
#:use-module (gnu packages pkg-config)
@@ -59,18 +62,22 @@ utilities.")
(define-public djview
(package
(name "djview")
- (version "4.10.6")
+ (version "4.11")
(source
(origin
- (method url-fetch)
- (uri (string-append "mirror://sourceforge/djvu/DjView/"
- (version-major+minor version) "/"
- "djview-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://git.code.sf.net/p/djvu/djview-git")
+ (commit (string-append "release." version))))
(sha256
- (base32 "08bwv8ppdzhryfcnifgzgdilb12jcnivl4ig6hd44f12d76z6il4"))))
+ (base32 "0qlhd0xlxn8i869m0hwdjvwivi2vigqm88wliyr1h7s84zl3qhsy"))
+ (file-name (git-file-name name version))))
(build-system gnu-build-system)
(native-inputs
- `(("pkg-config" ,pkg-config)
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("libtool" ,libtool)
+ ("pkg-config" ,pkg-config)
("qttools" ,qttools)))
(inputs
`(("djvulibre" ,djvulibre)
@@ -86,6 +93,11 @@ utilities.")
(lambda _
(substitute* "desktopfiles/djvulibre-djview4.desktop"
(("Exec=djview4 %f") "Exec=djview %f"))
+ #t))
+ (add-after 'unpack 'make-files-writable
+ (lambda _
+ (for-each make-file-writable
+ (find-files "."))
#t)))))
(home-page "http://djvu.sourceforge.net/djview4.html")
(synopsis "Viewer for the DjVu image format")
diff --git a/gnu/packages/documentation.scm b/gnu/packages/documentation.scm
index dcacdb456f..a3a07f56db 100644
--- a/gnu/packages/documentation.scm
+++ b/gnu/packages/documentation.scm
@@ -111,7 +111,7 @@ release/xsl/current")
("docbook-xsl" ,docbook-xsl)
("libxml2" ,libxml2)
("libxslt" ,libxslt)))
- (home-page "http://asciidoc.org/")
+ (home-page "https://asciidoc.org/")
(synopsis "Text-based document generation system")
(description
"AsciiDoc is a text document format for writing notes, documentation,
diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm
index 2ccda4b7a0..cba061f195 100644
--- a/gnu/packages/education.scm
+++ b/gnu/packages/education.scm
@@ -7,6 +7,7 @@
;;; Copyright © 2018, 2019, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2020 Robert Smith <robertsmith@posteo.net>
;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org>
+;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -39,6 +40,7 @@
#:use-module (gnu packages gettext)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
+ #:use-module (gnu packages golang)
#:use-module (gnu packages gtk)
#:use-module (gnu packages image)
#:use-module (gnu packages javascript)
@@ -68,6 +70,7 @@
#:use-module (guix utils)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system go)
#:use-module (guix build-system python)
#:use-module (guix build-system qt)
#:use-module (guix build-system trivial)
@@ -609,14 +612,14 @@ Portuguese, Spanish and Italian.")
(define-public fet
(package
(name "fet")
- (version "5.44.8")
+ (version "5.45.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.lalescu.ro/liviu/fet/download/"
"fet-" version ".tar.bz2"))
(sha256
- (base32 "1i59xpkdnrd3qzgqs11vsws57g33zvkad5q3an56vd94aw7z3kpw"))))
+ (base32 "04jns6wc20rz6cp410znsllknhp4zlf4rn8wgv712855nffs42c6"))))
(build-system gnu-build-system)
(arguments
`(#:phases
@@ -978,3 +981,35 @@ comparison flags, input-output devices, and a set of binary instructions.
The package includes a compiler, a virtual machine, a GUI for the virtual
machine, and more.")
(license license:gpl3+)))
+
+(define-public exercism
+ (package
+ (name "exercism")
+ (version "3.0.13")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/exercism/cli")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "17gvz9a0sn4p36hf4l77bxhhfipf4x998iay31layqwbnzmb4xy7"))
+ (patches (search-patches "exercism-disable-self-update.patch"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/exercism/cli/exercism"
+ #:unpack-path "github.com/exercism/cli"))
+ (inputs
+ `(("github.com/blang/semver" ,go-github-com-blang-semver)
+ ("github.com/spf13/cobra" ,go-github-com-spf13-cobra)
+ ("github.com/spf13/pflag" ,go-github-com-spf13-pflag)
+ ("github.com/spf13/viper" ,go-github-com-spf13-viper)
+ ("golang.org/x/net" ,go-golang-org-x-net)
+ ("golang.org/x/text" ,go-golang-org-x-text)))
+ (home-page "https://exercism.io")
+ (synopsis "Mentored learning for programming languages")
+ (description "Commandline client for exercism.io, a free service providing
+mentored learning for programming languages.")
+ (license license:expat)))
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index b44652fbba..946d01cba5 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -7780,7 +7780,7 @@ ack, ag, helm and pt.")
(define-public emacs-helm
(package
(name "emacs-helm")
- (version "3.6.0")
+ (version "3.6.2")
(source
(origin
(method git-fetch)
@@ -7789,7 +7789,7 @@ ack, ag, helm and pt.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0miq2q52pbicijp7pmj0widk252qixswywc03d120s4hya2b7vd7"))))
+ (base32 "0bf2glydc0vhp52z8zg8phmsglb63nac15zd82zr35dscc50bzrb"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-async" ,emacs-async)
diff --git a/gnu/packages/emulators.scm b/gnu/packages/emulators.scm
index 9798ac370e..59240f17c4 100644
--- a/gnu/packages/emulators.scm
+++ b/gnu/packages/emulators.scm
@@ -470,7 +470,7 @@ and Game Boy Color games.")
(define-public sameboy
(package
(name "sameboy")
- (version "0.13.1")
+ (version "0.13.2")
(source
(origin
(method git-fetch)
@@ -479,7 +479,7 @@ and Game Boy Color games.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1il2bpbc3xyvvhbs2bgid64svjxcdl4dbqz6jy1azfmvzdp7jkrn"))))
+ (base32 "19qb1ib9sk5bjdv4arbwkv8l2afpll5axrif3wi7p2yhvpba10c0"))))
(build-system gnu-build-system)
(native-inputs
`(("rgbds" ,rgbds)
@@ -489,7 +489,7 @@ and Game Boy Color games.")
`(("sdl2" ,sdl2)))
(arguments
`(#:tests? #f ; There are no tests
- #:make-flags `("CC=gcc" "CONF=release"
+ #:make-flags `("CC=gcc" "NATIVE_CC=gcc" "CONF=release"
,(string-append "DATA_DIR="
(assoc-ref %outputs "out")
"/share/sameboy/"))
diff --git a/gnu/packages/file-systems.scm b/gnu/packages/file-systems.scm
index ca02a1e593..dd72152c51 100644
--- a/gnu/packages/file-systems.scm
+++ b/gnu/packages/file-systems.scm
@@ -103,7 +103,7 @@ file permissions, timestamps, symbolic and hard links, and extended attributes.
Each file in the archive is protected by a checksum. If part of the archive
is corrupted you'll lose the affected file(s) but not the whole back-up.")
- (home-page "http://www.fsarchiver.org/")
+ (home-page "https://www.fsarchiver.org/")
(license license:gpl2)))
(define-public gphotofs
diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm
index fae5d591aa..b899c2fe6c 100644
--- a/gnu/packages/game-development.scm
+++ b/gnu/packages/game-development.scm
@@ -191,39 +191,39 @@ DeuTex has functions such as merging wads, etc.")
(package
(name "grfcodec")
(version "6.0.6")
- (source (origin
- (method url-fetch)
- (uri (string-append "http://binaries.openttd.org/extra/"
- name "/" version "/" name "-" version
- "-source.tar.xz"))
- (sha256
- (base32
- "08admgnpqcsifpicbm56apgv360fxapqpbbsp10qyk8i22w1ivsk"))))
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://binaries.openttd.org/extra/"
+ name "/" version "/" name "-" version
+ "-source.tar.xz"))
+ (sha256
+ (base32 "08admgnpqcsifpicbm56apgv360fxapqpbbsp10qyk8i22w1ivsk"))))
(build-system gnu-build-system)
(arguments
- '(#:tests? #f ; no check target
+ '(#:tests? #f ;no check target
#:phases
- (modify-phases %standard-phases
- (delete 'configure) ; no configure script
- (replace 'install ; no install target
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (bin (string-append out "/bin"))
- (doc (string-append out "/share/doc"))
- (man (string-append out "/share/man/man1")))
- (for-each (lambda (file)
- (install-file file bin))
- '("grfcodec" "grfid" "grfstrip" "nforenum"))
- (install-file "COPYING" doc)
- (with-directory-excursion "docs"
- (for-each (lambda (file)
- (install-file (string-append file ".txt") doc))
- '("auto_correct" "commands" "grf" "grfcodec" "grftut"
- "readme" "readme.rpn"))
- (for-each (lambda (file)
- (install-file file man))
- (find-files "." "\\.1"))))
- #t)))))
+ (modify-phases %standard-phases
+ (delete 'configure) ;no configure script
+ (replace 'install ;no install target
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin"))
+ (doc (string-append out "/share/doc"))
+ (man (string-append out "/share/man/man1")))
+ (for-each (lambda (file)
+ (install-file file bin))
+ '("grfcodec" "grfid" "grfstrip" "nforenum"))
+ (install-file "COPYING" doc)
+ (with-directory-excursion "docs"
+ (for-each (lambda (file)
+ (install-file (string-append file ".txt") doc))
+ '("auto_correct" "commands" "grf" "grfcodec" "grftut"
+ "readme" "readme.rpn"))
+ (for-each (lambda (file)
+ (install-file file man))
+ (find-files "." "\\.1"))))
+ #t)))))
(inputs
`(("boost" ,boost)
("libpng" ,libpng)
@@ -240,7 +240,7 @@ with a specific task:
@item @code{nforenum} checks NFO code for errors, making corrections when
necessary.
@end enumerate")
- (home-page "http://dev.openttdcoop.org/projects/grfcodec")
+ (home-page "https://dev.openttdcoop.org/projects/grfcodec")
;; GRFCodec, GRFID, and GRFStrip are exclusively under the GPL2.
;; NFORenum is under the GPL2+.
;; The MD5 implementation contained in GRFID is under the zlib license.
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index d64d6e7938..f48c4aa59a 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -289,15 +289,15 @@ freedesktop.org desktop notification specification.")
(define-public mm-common
(package
(name "mm-common")
- (version "1.0.0")
+ (version "1.0.1")
(source (origin
(method url-fetch)
- (uri (string-append "mirror://gnome/sources/" name "/"
+ (uri (string-append "mirror://gnome/sources/mm-common/"
(version-major+minor version) "/"
- name "-" version ".tar.xz"))
+ "mm-common-" version ".tar.xz"))
(sha256
(base32
- "1m4w33da9f4rx2d6kdj3ix3kl0gn16ml82v2mdn4hljr3q29nzdr"))))
+ "1jasx9a9g7nqf7jcv3mrg4qh5cp9sq724jxjaz4wa1dzmxsxg8i8"))))
(build-system meson-build-system)
(arguments
`(#:phases
@@ -5411,7 +5411,7 @@ USB transfers with your high-level application or system daemon.")
(define-public simple-scan
(package
(name "simple-scan")
- (version "3.36.2.1")
+ (version "3.36.3")
(source
(origin
(method url-fetch)
@@ -5419,7 +5419,7 @@ USB transfers with your high-level application or system daemon.")
(version-major+minor version) "/"
"simple-scan-" version ".tar.xz"))
(sha256
- (base32 "0aq1pf0wk536b91as54684xgmhl7lps0k2xcwha5wh6h1isyb35v"))))
+ (base32 "0gsz7jqk0fdj0mama3cnss9i1adw18cpdnlcjcjh4r5qijmvx0vh"))))
(build-system meson-build-system)
;; TODO: Fix icons in home screen, About dialogue, and scan menu.
(arguments
diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm
index e00a09e989..1f5deb3302 100644
--- a/gnu/packages/gnuzilla.scm
+++ b/gnu/packages/gnuzilla.scm
@@ -1135,11 +1135,11 @@ standards of the IceCat project.")
(cpe-version . ,(first (string-split version #\-)))))))
;; Update this together with icecat!
-(define %icedove-build-id "20200505000000") ;must be of the form YYYYMMDDhhmmss
+(define %icedove-build-id "20200602000000") ;must be of the form YYYYMMDDhhmmss
(define-public icedove
(package
(name "icedove")
- (version "68.8.0")
+ (version "68.9.0")
(source icecat-source)
(properties
`((cpe-name . "thunderbird_esr")))
@@ -1425,7 +1425,7 @@ standards of the IceCat project.")
;; in the Thunderbird release tarball. We don't use the release
;; tarball because it duplicates the Icecat sources and only adds the
;; "comm" directory, which is provided by this repository.
- ,(let ((changeset "4c022a34cd5dd776671721c44db89f693f59132c"))
+ ,(let ((changeset "787d887f43fcbfe254ff0c9650c5517710071b74"))
(origin
(method hg-fetch)
(uri (hg-reference
@@ -1434,7 +1434,7 @@ standards of the IceCat project.")
(file-name (string-append "thunderbird-" version "-checkout"))
(sha256
(base32
- "0k3653ic1g5pwcmf87a95lbzjah25l9qx0r49c4j04c21069fhad")))))
+ "1z1k3r1jilwmsywiyp8gh49f61cl9n085k95x7ihyld3rvgcjm9f")))))
("autoconf" ,autoconf-2.13)
("cargo" ,rust "cargo")
("clang" ,clang)
diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm
index d95e195ba5..a631ad4285 100644
--- a/gnu/packages/golang.scm
+++ b/gnu/packages/golang.scm
@@ -17,6 +17,7 @@
;;; Copyright @ 2019, 2020 Alex Griffin <a@ajgrf.com>
;;; Copyright © 2019, 2020 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2020 Jack Hill <jackhill@jackhill.us>
+;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -1179,6 +1180,103 @@ incoming requests with their respective handler.")
@code{clockwork.Clock} interface instead.")
(license license:asl2.0))))
+(define-public go-github-com-spf13-afero
+ (package
+ (name "go-github-com-spf13-afero")
+ (version "1.2.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spf13/afero")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0j9r65qgd58324m85lkl49vk9dgwd62g7dwvkfcm3k6i9dc555a9"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/spf13/afero"))
+ (propagated-inputs
+ `(("golang.org/x/text" ,go-golang-org-x-text)))
+ (home-page "https://github.com/spf13/afero")
+ (synopsis "Filesystem abstraction for Go")
+ (description "Filesystem abstraction for Go")
+ (license license:asl2.0)))
+
+(define-public go-github-com-spf13-cast
+ (package
+ (name "go-github-com-spf13-cast")
+ (version "1.3.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spf13/cast")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0lb84788glr0qzrq2ifi36rgvp96qrgywvxrr3ggq5hrbr38hgn1"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/spf13/cast"))
+ (native-inputs
+ `(("go-github-com-stretchr-testify" ,go-github-com-stretchr-testify)))
+ (home-page "https://github.com/spf13/cast")
+ (synopsis "Safe and easy casting from one type to another in Go")
+ (description "Safe and easy casting from one type to another in Go")
+ (license license:expat)))
+
+(define-public go-github-com-spf13-cobra
+ (package
+ (name "go-github-com-spf13-cobra")
+ (version "1.0.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spf13/cobra")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0vbppqqhby302a5ayn0296jqr71qkcd4c9am7wzsk6z71fwdsa7h"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/spf13/cobra"))
+ (propagated-inputs
+ `(("github.com/spf13/pflag" ,go-github-com-spf13-pflag)))
+ (home-page "https://github.com/spf13/cobra")
+ (synopsis "Go library for creating CLI applications")
+ (description "Cobra is both a library for creating powerful modern CLI
+applications as well as a program to generate applications and command files.")
+ (license license:asl2.0)))
+
+(define-public go-github-com-spf13-jwalterweatherman
+ (package
+ (name "go-github-com-spf13-jwalterweatherman")
+ (version "1.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spf13/jwalterweatherman")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1ywmkwci5zyd88ijym6f30fj5c0k2yayxarkmnazf5ybljv50q7b"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/spf13/jwalterweatherman"))
+ (native-inputs
+ `(("go-github-com-stretchr-testify" ,go-github-com-stretchr-testify)))
+ (home-page "https://github.com/spf13/jwalterweatherman")
+ (synopsis "Go logging library")
+ (description "Go logging library")
+ (license license:expat)))
+
(define-public go-github-com-spf13-pflag
(package
(name "go-github-com-spf13-pflag")
@@ -1191,8 +1289,8 @@ incoming requests with their respective handler.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32
- "0gpmacngd0gpslnbkzi263f5ishigzgh6pbdv9hp092rnjl4nd31"))))
+ (base32
+ "0gpmacngd0gpslnbkzi263f5ishigzgh6pbdv9hp092rnjl4nd31"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/spf13/pflag"))
@@ -1206,6 +1304,143 @@ with the
GNU extensions} to the POSIX recommendations for command-line options.")
(license license:bsd-3)))
+(define-public go-github-com-spf13-viper
+ (package
+ (name "go-github-com-spf13-viper")
+ (version "1.7.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spf13/viper.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "099n2g7fg6r8hqyszqw2axr775qyhyvwhsykvgw0f0s16ql48h5c"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/spf13/viper"))
+ (propagated-inputs
+ `(("github.com/spf13/afero" ,go-github-com-spf13-afero)
+ ("github.com/spf13/cast" ,go-github-com-spf13-cast)
+ ("github.com/spf13/pflag" ,go-github-com-spf13-pflag)
+ ("github.com/spf13/jwalterweatherman" ,go-github-com-spf13-jwalterweatherman)
+ ("github.com/fsnotify/fsnotify" ,go-github-com-fsnotify-fsnotify)
+ ("github.com/hashicorp/hcl" ,go-github-com-hashicorp-hcl)
+ ("github.com/magiconair/properties" ,go-github-com-magiconair-properties)
+ ("github.com/mitchellh/mapstructure" ,go-github-com-mitchellh-mapstructure)
+ ("github.com/pelletier/go-toml" ,go-github-com-pelletier-go-toml)
+ ("github.com/subosito/gotenv" ,go-github-com-subosito-gotenv)
+
+ ("gopkg.in/ini.v1" ,go-gopkg-in-ini-v1)
+ ("gopkg.in/yaml.v2" ,go-gopkg-in-yaml-v2)))
+ (native-inputs
+ `(("go-github-com-stretchr-testify" ,go-github-com-stretchr-testify)))
+ (home-page "https://github.com/spf13/viper")
+ (synopsis "Go configuration with fangs")
+ (description
+ "Viper is a complete configuration solution for Go applications including
+12-Factor apps. It is designed to work within an application, and can handle
+all types of configuration needs and formats.")
+ (license license:expat)))
+
+(define-public go-github-com-fsnotify-fsnotify
+ (package
+ (name "go-github-com-fsnotify-fsnotify")
+ (version "1.4.9")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/fsnotify/fsnotify")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1i1r72knpbfwwql9frn9bqc3nhfc2ai5m6qllcyr6wban62lr40x"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/fsnotify/fsnotify"))
+ (propagated-inputs
+ `(("golang.org/x/sys" ,go-golang-org-x-sys)))
+ (home-page "https://github.com/fsnotify/fsnotify")
+ (synopsis "File system notifications for Go")
+ (description "File system notifications for Go")
+ (license license:bsd-3)))
+
+(define-public go-github-com-magiconair-properties
+ (package
+ (name "go-github-com-magiconair-properties")
+ (version "1.8.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/magiconair/properties")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "19zqw1x0w0crh8zc84yy82nkcc5yjz72gviaf2xjgfm5a8np7nyb"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/magiconair/properties"))
+ (home-page "https://github.com/magiconair/properties")
+ (synopsis "Java properties scanner for Go")
+ (description "Java properties scanner for Go")
+ (license license:bsd-2)))
+
+(define-public go-github-com-pelletier-go-toml
+ (package
+ (name "go-github-com-pelletier-go-toml")
+ (version "1.8.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pelletier/go-toml")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0fxmjm85c9h43lvqz71wr93fcc63bhj82nwby80222xx8ja63g7y"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/pelletier/go-toml"))
+ (native-inputs
+ `(("github.com/BurntSushi/toml" ,go-github-com-burntsushi-toml)
+ ("github.com/davecgh/go-spew" ,go-github-com-davecgh-go-spew)
+ ("gopkg.in/yaml.v2" ,go-gopkg-in-yaml-v2)))
+ (home-page "https://github.com/pelletier/go-toml")
+ (synopsis "Go library for the TOML configuration language")
+ (description "Go library for the TOML configuration language")
+ (license license:expat)))
+
+(define-public go-github-com-subosito-gotenv
+ (package
+ (name "go-github-com-subosito-gotenv")
+ (version "1.2.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/subosito/gotenv")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0mav91j7r4arjkpq5zcf9j74f6pww8ic53x43wy7kg3ibw31yjs5"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/subosito/gotenv"))
+ (native-inputs
+ `(("go-github-com-stretchr-testify" ,go-github-com-stretchr-testify)))
+ (home-page "https://github.com/subosito/gotenv")
+ (synopsis "Go library for loading environment variables from files")
+ (description "Go library for loading environment variables from files")
+ (license license:expat)))
+
(define-public go-github-com-sirupsen-logrus
(package
(name "go-github-com-sirupsen-logrus")
@@ -1474,6 +1709,30 @@ which satisfies the cron expression.")
(description "This package provides a test library for the Go language.")
(license license:asl2.0))))
+(define-public go-gopkg-in-ini-v1
+ (package
+ (name "go-gopkg-in-ini-v1")
+ (version "1.56.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/go-ini/ini")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0j5z0cngg6mq2f9id083jcdi7k6r2h35714pashv6sdv2q7bmfc5"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "gopkg.in/ini.v1"
+ ;; Requires large unpackaged test framework
+ #:tests? #f))
+ (home-page "https://gopkg.in/ini.v1")
+ (synopsis "Go library for ini files")
+ (description "Go library for ini files")
+ (license license:asl2.0)))
+
(define-public go-gopkg-in-yaml-v2
(package
(name "go-gopkg-in-yaml-v2")
@@ -2404,6 +2663,28 @@ the current user without cgo. This library does that, enabling
cross-compilation.")
(license license:expat))))
+(define-public go-github-com-mitchellh-mapstructure
+ (package
+ (name "go-github-com-mitchellh-mapstructure")
+ (version "1.1.2") ;; NOTE: Updating to 1.3.1 breaks tests on viper-1.7.0
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mitchellh/mapstructure")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "03bpv28jz9zhn4947saqwi328ydj7f6g6pf1m2d4m5zdh5jlfkrr"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/mitchellh/mapstructure"))
+ (home-page "https://github.com/mitchellh/mapstructure")
+ (synopsis "Go library for decoding generic map values")
+ (description "Go library for decoding generic map values")
+ (license license:expat)))
+
(define-public go-github-com-multiformats-go-multiaddr
(let ((commit "fe1c46f8be5af4aff4db286e08839295bd922efb")
(revision "0"))
diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm
index b2bc63b9d0..44d78c036b 100644
--- a/gnu/packages/graphics.scm
+++ b/gnu/packages/graphics.scm
@@ -206,14 +206,14 @@ with the @command{autotrace} utility or as a C library, @code{libautotrace}.")
(define-public blender
(package
(name "blender")
- (version "2.82a")
+ (version "2.83.0")
(source (origin
(method url-fetch)
(uri (string-append "https://download.blender.org/source/"
"blender-" version ".tar.xz"))
(sha256
(base32
- "18zbdgas6qf2kmvvlimxgnq7y9kj7hdxcgixrs6fj50x40q01q2d"))))
+ "07rzm4xaj94pjxy2vlqfhi1adsqpshfkrzrq8kljmcbnw22vrqhl"))))
(build-system cmake-build-system)
(arguments
(let ((python-version (version-major+minor (package-version python))))
diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm
index 11d844b777..3cadccd25c 100644
--- a/gnu/packages/gtk.scm
+++ b/gnu/packages/gtk.scm
@@ -353,24 +353,6 @@ graph-like environments, e.g. modular synths or finite state machine
diagrams.")
(license license:gpl3+)))
-(define-public ganv-devel
- (let ((commit "12f7d6b0438c94dd87f773a92eee3453d971846e")
- (revision "1"))
- (package
- (inherit ganv)
- (name "ganv")
- (version (string-append "1.5.4-" revision "."
- (string-take commit 9)))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://git.drobilla.net/ganv.git")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1cr8w02lr6bk9mkxa12j3imq721b2an2yn4bj5wnwmpm91ddn2gi")))))))
-
(define-public gtksourceview-2
(package
(name "gtksourceview")
@@ -1725,14 +1707,14 @@ glass artworks done by Venicians glass blowers.")
(define-public gtkspell3
(package
(name "gtkspell3")
- (version "3.0.9")
+ (version "3.0.10")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/gtkspell/"
version "/" name "-" version ".tar.xz"))
(sha256
(base32
- "09jdicmpipmj4v84gnkqwbmj4lh8v0i6pn967rb9jx4zg2ia9x54"))))
+ "0cjp6xdcnzh6kka42w9g0w2ihqjlq8yl8hjm9wsfnixk6qwgch5h"))))
(build-system gnu-build-system)
(native-inputs
`(("intltool" ,intltool)
@@ -1743,7 +1725,7 @@ glass artworks done by Venicians glass blowers.")
("gtk+" ,gtk+)
("pango" ,pango)))
(propagated-inputs
- `(("enchant" ,enchant-1.6))) ;gtkspell3-3.0.pc refers to it
+ `(("enchant" ,enchant))) ; gtkspell3-3.0.pc refers to it
(home-page "http://gtkspell.sourceforge.net")
(synopsis "Spell-checking addon for GTK's TextView widget")
(description
diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 43f0f37b91..885086fe30 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -276,7 +276,7 @@ JNI.")
(version "1.8.4")
(source (origin
(method url-fetch)
- (uri (string-append "http://archive.apache.org/dist/"
+ (uri (string-append "mirror://apache/dist/"
"ant/source/apache-ant-"
version "-src.tar.bz2"))
(sha256
@@ -10832,7 +10832,7 @@ graphs, and pie charts.")
(version "3.1")
(source (origin
(method url-fetch)
- (uri (string-append "https://archive.apache.org/dist/httpcomponents/"
+ (uri (string-append "mirror://apache/dist/httpcomponents/"
"commons-httpclient/source/commons-httpclient-"
version "-src.tar.gz"))
(sha256
@@ -10928,7 +10928,7 @@ inside a Zip archive.")
(version "2.0.8")
(source (origin
(method url-fetch)
- (uri (string-append "https://archive.apache.org/dist/jakarta/oro/"
+ (uri (string-append "mirror://apache/dist/jakarta/oro/"
"jakarta-oro-" version ".tar.gz"))
(sha256
(base32
diff --git a/gnu/packages/kde-utils.scm b/gnu/packages/kde-utils.scm
index f97c03cc61..3c0eb09745 100644
--- a/gnu/packages/kde-utils.scm
+++ b/gnu/packages/kde-utils.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017, 2019 Hartmut Goebel <h.goebel@crazy-compilers.com>
+;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -403,14 +404,14 @@ remind you to take a break now and then.")
(define-public smb4k
(package
(name "smb4k")
- (version "3.0.2")
+ (version "3.0.6")
(source
(origin
(method url-fetch)
(uri (string-append "https://sourceforge.net/projects/smb4k/files/"
version "/smb4k-" version ".tar.xz/download"))
(sha256
- (base32 "1daajaj8qhxkzz8dsaracwi49z4i57466h6qnqnh2ir2l54q00ir"))))
+ (base32 "0hz6nfd845bykf78s4g2qs77szl96gy6g8rpg44pqd39a0k0xbh7"))))
(build-system qt-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm
index 34579a776c..a98ae152f6 100644
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@ -599,7 +599,7 @@ Microsoft Publisher documents of all versions.")
(define-public libnumbertext
(package
(name "libnumbertext")
- (version "1.0.5")
+ (version "1.0.6")
(source
(origin
(method url-fetch)
@@ -607,7 +607,7 @@ Microsoft Publisher documents of all versions.")
"releases/download/" version
"/libnumbertext-" version ".tar.xz"))
(sha256
- (base32 "1xzlwhwwhvr76kfdsw5gvfjfdayz803z65h331gv5dpc9imhijg1"))))
+ (base32 "0mxf22gpbr818ib4av17zmyx6i6nf4br5qlxq0qvfz5z6h5j57vk"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags '("--disable-static")))
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 78ca56fdfa..a3b1b9d1c0 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -194,11 +194,11 @@ defconfig. Return the appropriate make target if applicable, otherwise return
"deblob-check"))
(sha256 deblob-check-hash))))
-(define deblob-scripts-5.6
+(define deblob-scripts-5.7
(linux-libre-deblob-scripts
- "5.6.7"
- (base32 "196fdbfy1f8zbmnv0ik720snig2bacsh7hfyvgbmlsfk3cil2zgv")
- (base32 "1g0bi3c8xzy1vz6w1xbpkb3a26bqn9d1yphcqz2ki4aikra81wid")))
+ "5.7.1"
+ (base32 "1c0n39wg6xij4x63ppg0m80kfcffkn3iilm3chyiix09n9g7vb78")
+ (base32 "02is246xaql1br3kizqicrkp982nw4gdwpn7nlzjazvsmyd1hcv2")))
(define deblob-scripts-5.4
(linux-libre-deblob-scripts
@@ -371,50 +371,50 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(sha256 hash)))
-(define-public linux-libre-5.6-version "5.6.17")
-(define-public linux-libre-5.6-pristine-source
- (let ((version linux-libre-5.6-version)
- (hash (base32 "17kzalz8z6svv6nwa3dbmf7nyvpb2wwwyabj19vdwf6v05a28fn3")))
+(define-public linux-libre-5.7-version "5.7.2")
+(define-public linux-libre-5.7-pristine-source
+ (let ((version linux-libre-5.7-version)
+ (hash (base32 "02brxm78n0kg4mh48acvjsr7mpvaqd279ycyaixaflid1s1awrb0")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
- deblob-scripts-5.6)))
+ deblob-scripts-5.7)))
-(define-public linux-libre-5.4-version "5.4.45")
+(define-public linux-libre-5.4-version "5.4.46")
(define-public linux-libre-5.4-pristine-source
(let ((version linux-libre-5.4-version)
- (hash (base32 "0bpy2lb3bqmkaqxzdmssgmhbjsys7d3lyfv4x919q0596jgh6gqh")))
+ (hash (base32 "13hvnfdcbcb9a21zizq8d90mc8maxz03zmzsj6iqsjd2y7r4y1rh")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.4)))
-(define-public linux-libre-4.19-version "4.19.127")
+(define-public linux-libre-4.19-version "4.19.128")
(define-public linux-libre-4.19-pristine-source
(let ((version linux-libre-4.19-version)
- (hash (base32 "0vsq5vjyh6n8acjnldfs0zny63l12fn2pssb8zbwidc8qmmqibw2")))
+ (hash (base32 "0g31ad3wziy4xqna0yvwjcnza3jhd93syjpfvmwh0b4pkj2adar9")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.19)))
-(define-public linux-libre-4.14-version "4.14.183")
+(define-public linux-libre-4.14-version "4.14.184")
(define-public linux-libre-4.14-pristine-source
(let ((version linux-libre-4.14-version)
- (hash (base32 "11c0vd2pwplm8wafich4zg2mnp10vvnap987c5jh96w1avpsyra2")))
+ (hash (base32 "0h6r06c1d7amkfglsr66ic89p0zxpmk7jkq1ylcbknmkiwkixx9g")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.14)))
-(define-public linux-libre-4.9-version "4.9.226")
+(define-public linux-libre-4.9-version "4.9.227")
(define-public linux-libre-4.9-pristine-source
(let ((version linux-libre-4.9-version)
- (hash (base32 "1jj5ydz5cy87z7hrv54bkyl9739lpzja8580ngjhrip5iwb8q2j6")))
+ (hash (base32 "0pqc0wld4s4zjas95xm54mrkk00l9zkc59b6i9gq4km126s8bi1q")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.9)))
-(define-public linux-libre-4.4-version "4.4.226")
+(define-public linux-libre-4.4-version "4.4.227")
(define-public linux-libre-4.4-pristine-source
(let ((version linux-libre-4.4-version)
- (hash (base32 "1dwvm81i62b06jsl38spfn719zrsbwq5z8viwckrpw4ma4w9k0j1")))
+ (hash (base32 "196x57w740firg8zchypq4vq6a83ymmwn9amqrscym9zr0pcgm40")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.4)))
@@ -447,14 +447,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(patches (append (origin-patches source)
patches))))
-(define-public linux-libre-5.6-source
- (source-with-patches linux-libre-5.6-pristine-source
+(define-public linux-libre-5.7-source
+ (source-with-patches linux-libre-5.7-pristine-source
(list %boot-logo-patch
- %linux-libre-arm-export-__sync_icache_dcache-patch
- ;; Pinebook Pro patch from linux-next,
- ;; can be dropped for linux-libre 5.7
- (search-patch
- "linux-libre-support-for-Pinebook-Pro.patch"))))
+ %linux-libre-arm-export-__sync_icache_dcache-patch)))
(define-public linux-libre-5.4-source
(source-with-patches linux-libre-5.4-pristine-source
@@ -555,9 +551,9 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(description "Headers of the Linux-Libre kernel.")
(license license:gpl2)))
-(define-public linux-libre-headers-5.6
- (make-linux-libre-headers* linux-libre-5.6-version
- linux-libre-5.6-source))
+(define-public linux-libre-headers-5.7
+ (make-linux-libre-headers* linux-libre-5.7-version
+ linux-libre-5.7-source))
(define-public linux-libre-headers-5.4
(make-linux-libre-headers* linux-libre-5.4-version
@@ -860,9 +856,9 @@ It has been modified to remove all non-free binary blobs.")
("CONFIG_RTC_DRV_RK808" . #t))
%default-extra-linux-options)))
-(define-public linux-libre-arm-generic-5.6
- (make-linux-libre* linux-libre-5.6-version
- linux-libre-5.6-source
+(define-public linux-libre-arm-generic-5.7
+ (make-linux-libre* linux-libre-5.7-version
+ linux-libre-5.7-source
'("armhf-linux")
#:defconfig "multi_v7_defconfig"
#:extra-version "arm-generic"
@@ -922,9 +918,9 @@ It has been modified to remove all non-free binary blobs.")
("CONFIG_RTC_DRV_RK808" . #t))
%default-extra-linux-options)))
-(define-public linux-libre-arm64-generic-5.6
- (make-linux-libre* linux-libre-5.6-version
- linux-libre-5.6-source
+(define-public linux-libre-arm64-generic-5.7
+ (make-linux-libre* linux-libre-5.7-version
+ linux-libre-5.7-source
'("aarch64-linux")
#:defconfig "defconfig"
#:extra-version "arm64-generic"
@@ -1151,6 +1147,8 @@ supported under @file{/sys/class/backlight/}.")
(base32
"1qi4l6yam8nrlmc3zwkrz9vph0xsj1cgmkqci4652mbpbzigg7vn"))))
(build-system linux-module-build-system)
+ (arguments
+ `(#:tests? #f)) ; no test suite
(home-page "https://github.com/umlaeute/v4l2loopback")
(synopsis "Linux kernel module to create virtual V4L2 video devices")
(description
@@ -2025,15 +2023,17 @@ external rate conversion.")
(define-public iptables
(package
(name "iptables")
- (version "1.8.4")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "mirror://netfilter.org/iptables/iptables-"
- version ".tar.bz2"))
- (sha256
- (base32
- "0z0mgs1ghvn3slc868mgbf2g26njgrzcy5ggyb5w4i55j1a3lflr"))))
+ ;; XXX When updating, remove the ‘install-missing-script’ phase.
+ (version "1.8.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (list (string-append "mirror://netfilter.org/iptables/iptables-"
+ version ".tar.bz2")
+ (string-append "https://www.netfilter.org/projects/iptables/"
+ "files/iptables-" version ".tar.bz2")))
+ (sha256
+ (base32 "02a3575ypdpg6a2x752mhk3f7h1381ymkq1n0gss6fp6292xfmyl"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)
@@ -2045,7 +2045,19 @@ external rate conversion.")
(arguments
'(#:tests? #f ; no test suite
#:configure-flags ; add $libdir to the RUNPATH of executables
- (list (string-append "LDFLAGS=-Wl,-rpath=" %output "/lib"))))
+ (list (string-append "LDFLAGS=-Wl,-rpath=" %output "/lib"))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'install-missing-script
+ ;; A typo prevents installation of /sbin/iptables-apply. It's been
+ ;; fixed upstream (d4ed0c741fc789bb09d977d74d30875fdd50d08b), but
+ ;; a patch would require bootstrapping and more inputs. Simply copy
+ ;; the file ourselves.
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (sbin (string-append out "/sbin")))
+ (install-file "iptables/iptables-apply" sbin)
+ #t))))))
(home-page "https://www.netfilter.org/projects/iptables/index.html")
(synopsis "Programs to configure Linux IP packet filtering rules")
(description
@@ -3893,7 +3905,7 @@ Translation (@dfn{SAT}) are also supported.")
(define-public nvme-cli
(package
(name "nvme-cli")
- (version "1.10.1")
+ (version "1.11.2")
(home-page "https://github.com/linux-nvme/nvme-cli")
(source (origin
(method git-fetch)
@@ -3901,7 +3913,7 @@ Translation (@dfn{SAT}) are also supported.")
(url home-page)
(commit (string-append "v" version))))
(sha256
- (base32 "12wp2wxmsw2v8m9bhvwvdbhdgx1md8iilhbl19sfzz2araiwi2x8"))
+ (base32 "0ngh7zffjf6ac8b22hdi4ry7hjlafih172hrbpw8j17r7c0wjy9i"))
(file-name (git-file-name name version))))
(build-system gnu-build-system)
(arguments
@@ -4933,7 +4945,7 @@ feature, and a laptop with an accelerometer. It has no effect on SSDs.")
(define-public thinkfan
(package
(name "thinkfan")
- (version "1.1")
+ (version "1.2")
(source
(origin
(method git-fetch)
@@ -4942,7 +4954,7 @@ feature, and a laptop with an accelerometer. It has no effect on SSDs.")
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1fxd1w3z65glw6y04myn7ihgswkx6sqnkky159mik4n96pfrsvr5"))))
+ (base32 "0vmkpj575a1w52zx1jn6kdrk8rc9vp0f1bldi1bajicpgbs6rjd3"))))
(build-system cmake-build-system)
(arguments
`(#:modules ((guix build cmake-build-system)
@@ -4978,7 +4990,7 @@ feature, and a laptop with an accelerometer. It has no effect on SSDs.")
(inputs
`(("libatasmart" ,libatasmart)
("yaml-cpp" ,yaml-cpp)))
- (home-page "http://thinkfan.sourceforge.net/")
+ (home-page "https://github.com/vmatare/thinkfan")
(synopsis "Simple fan control program")
(description
"Thinkfan is a simple fan control program. It reads temperatures,
@@ -6027,14 +6039,14 @@ re-use code and to avoid re-inventing the wheel.")
(define-public libnftnl
(package
(name "libnftnl")
- (version "1.1.6")
+ (version "1.1.7")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://netfilter.org/libnftnl/"
"libnftnl-" version ".tar.bz2"))
(sha256
- (base32 "1jhyxsfrfqjascrm5lnxlcyzj6n0gc0qc1bp2asb7m61dxlmmsy1"))))
+ (base32 "13zd90bfrr0q3j0l0cbc8kiizccw6n8gp727kqnfljh024zw3nr0"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@@ -6051,7 +6063,7 @@ used by nftables.")
(define-public nftables
(package
(name "nftables")
- (version "0.9.3")
+ (version "0.9.5")
(source
(origin
(method url-fetch)
@@ -6060,7 +6072,7 @@ used by nftables.")
(string-append "https://www.nftables.org/projects/nftables"
"/files/nftables-" version ".tar.bz2")))
(sha256
- (base32 "0y6vbqp6x8w165q65h4n9sba1406gaz0d4744gqszbm7w9f92swm"))))
+ (base32 "05kyri19q776mymkbcxq3786l6nrf4xg7f3n8my0aw63mdz9bhgj"))))
(build-system gnu-build-system)
(arguments `(#:configure-flags
'("--disable-man-doc"))) ; FIXME: Needs docbook2x.
diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 0bf2dec44d..025d1bc9ef 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -11567,6 +11567,38 @@ accompaniment to the standard ANSI facilities.")
(define-public cl-osicat
(sbcl-package->cl-source-package sbcl-osicat))
+(define-public sbcl-clx-xembed
+ (let ((commit "a5c4b844d31ee68ffa58c933cc1cdddde6990743")
+ (revision "1"))
+ (package
+ (name "sbcl-clx-xembed")
+ (version (git-version "0.1" revision commit))
+ (home-page "https://github.com/laynor/clx-xembed")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/laynor/clx-xembed.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1abx4v36ycmfjdwpjk4hh8058ya8whwia7ds9vd96q2qsrs57f12"))))
+ (build-system asdf-build-system/sbcl)
+ (arguments
+ `(#:asd-system-name "xembed"))
+ (inputs
+ `(("sbcl-clx" ,sbcl-clx)))
+ (synopsis "CL(x) xembed protocol implementation ")
+ (description "CL(x) xembed protocol implementation")
+ ;; MIT License
+ (license license:expat))))
+
+(define-public cl-clx-xembed
+ (sbcl-package->cl-source-package sbcl-clx-xembed))
+
+(define-public ecl-clx-xembed
+ (sbcl-package->ecl-package sbcl-clx-xembed))
+
(define-public sbcl-quantile-estimator
(package
(name "sbcl-quantile-estimator")
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 4be165f390..0e11da41ca 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2016, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2017, 2020 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
-;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Kei Kebreau <kkebreau@posteo.net>
;;; Copyright © 2018 Mark Meyer <mark@ofosos.org>
;;; Copyright © 2018 Ben Woodcroft <donttrustben@gmail.com>
@@ -715,14 +715,14 @@ than 8 bits, and at the end only some significant 8 bits are kept.")
(define-public dlib
(package
(name "dlib")
- (version "19.7")
+ (version "19.20")
(source (origin
(method url-fetch)
(uri (string-append
"http://dlib.net/files/dlib-" version ".tar.bz2"))
(sha256
(base32
- "1mljz02kwkrbggyncxv5fpnyjdybw2qihaacb3js8yfkw12vwpc2"))
+ "139jyi19qz37wwmmy48gil9d1kkh2r3w3bwdzabha6ayxmba96nz"))
(modules '((guix build utils)))
(snippet
'(begin
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 8337bc7808..ec1233f83b 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -711,7 +711,7 @@ security functionality including PGP, S/MIME, SSH, and SSL.")
(define-public mu
(package
(name "mu")
- (version "1.4.9")
+ (version "1.4.10")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/djcb/mu/releases/"
@@ -719,7 +719,7 @@ security functionality including PGP, S/MIME, SSH, and SSL.")
"mu-" version ".tar.xz"))
(sha256
(base32
- "0dgmwdaszh5m7v1py3f9n9f6avb30vrl93g58a1k225iwdsv01d5"))))
+ "0vbyrmv3d2bja4vx86za93gq46vxg18j12g0lca3x1dl8d5g2xa6"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)
@@ -1209,14 +1209,14 @@ which can add many functionalities to the base client.")
(define-public msmtp
(package
(name "msmtp")
- (version "1.8.10")
+ (version "1.8.11")
(source
(origin
(method url-fetch)
(uri (string-append "https://marlam.de/msmtp/releases/"
"/msmtp-" version ".tar.xz"))
(sha256
- (base32 "041g921rdjiv8bapp61gp4rylq8cckfkcwzyh8bs7xwxs4wpzfna"))))
+ (base32 "0q0fg235qk448l1xjcwyxr7vcpzk6w57jzhjbkb0m7nffyhhypzj"))))
(build-system gnu-build-system)
(inputs
`(("libsecret" ,libsecret)
@@ -2159,14 +2159,14 @@ converts them to maildir format directories.")
(define-public mpop
(package
(name "mpop")
- (version "1.4.9")
+ (version "1.4.10")
(source
(origin
(method url-fetch)
(uri (string-append "https://marlam.de/mpop/releases/"
"mpop-" version ".tar.xz"))
(sha256
- (base32 "0hinmyd4lipy9wi3grwm72vv6xrpf4m08i9g9nlxzxnwfanw885q"))))
+ (base32 "1243hazpiwgvz2m3p48cdh0yw1019i6xjxgc7qyhmxcdy0inb6wy"))))
(build-system gnu-build-system)
(inputs
`(("gnutls" ,gnutls)))
@@ -2322,6 +2322,13 @@ transfer protocols.")
"--with-table-db")
#:phases
(modify-phases %standard-phases
+ ;; See: https://github.com/OpenSMTPD/OpenSMTPD/issues/1069.
+ (add-after 'unpack 'fix-smtpctl-encrypt-bug
+ (lambda _
+ (substitute* "smtpd/smtpctl.c"
+ (("\"encrypt\", \"--\",")
+ "\"encrypt\","))
+ #t))
;; Fix some incorrectly hard-coded external tool file names.
(add-after 'unpack 'patch-FHS-file-names
(lambda _
diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm
index 779781f822..2d059baddc 100644
--- a/gnu/packages/man.scm
+++ b/gnu/packages/man.scm
@@ -164,7 +164,7 @@ the traditional flat-text whatis databases.")
(define-public man-pages
(package
(name "man-pages")
- (version "5.06")
+ (version "5.07")
(source
(origin
(method url-fetch)
@@ -174,7 +174,7 @@ the traditional flat-text whatis databases.")
(string-append "mirror://kernel.org/linux/docs/man-pages/Archive/"
"man-pages-" version ".tar.xz")))
(sha256
- (base32 "0l7ypgl36jswa077qvdh1rcsvnwr64vja6cc32bab86sm41akf3h"))))
+ (base32 "13b3q7c67r0wkla4pdihl1qh09k67ms2z5jgzfqgpdqqy6mgziwd"))))
(build-system gnu-build-system)
(arguments
'(#:phases (modify-phases %standard-phases (delete 'configure))
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 9a24625a52..45d699e39c 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1567,7 +1567,7 @@ online as well as original implementations of various other algorithms.")
(source (origin
(method url-fetch)
(uri (string-append
- "http://www.coin-or.org/download/source/Ipopt/Ipopt-"
+ "https://www.coin-or.org/download/source/Ipopt/Ipopt-"
version".tgz"))
(sha256
(base32
@@ -1601,7 +1601,7 @@ online as well as original implementations of various other algorithms.")
(inputs
;; TODO: Maybe add dependency on COIN-MUMPS, ASL, and HSL.
`(("lapack" ,lapack))) ;for both libblas and liblapack
- (home-page "http://www.coin-or.org")
+ (home-page "https://www.coin-or.org")
(synopsis "Large-scale nonlinear optimizer")
(description
"The Interior Point Optimizer (IPOPT) is a software package for
diff --git a/gnu/packages/maven.scm b/gnu/packages/maven.scm
index c18850bb26..a62eb7469e 100644
--- a/gnu/packages/maven.scm
+++ b/gnu/packages/maven.scm
@@ -2,6 +2,7 @@
;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
+;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -339,7 +340,7 @@ Maven Wagon, for use in Maven.")))
(version "3.2.1")
(source (origin
(method url-fetch)
- (uri (string-append "https://archive.apache.org/dist/maven/shared/"
+ (uri (string-append "mirror://apache/dist/maven/shared/"
"maven-shared-utils-" version "-source-release.zip"))
(sha256
(base32
@@ -379,7 +380,7 @@ replacement with improvements.")
(version "3.5")
(source (origin
(method url-fetch)
- (uri (string-append "https://archive.apache.org/dist/maven/"
+ (uri (string-append "mirror://apache/dist/maven/"
"plugin-tools/maven-plugin-tools-" version
"-source-release.zip"))
(sha256 (base32 "1ryqhs62j5pas93brhf5dsnvp99hxbvssf681yj5rk3r9h24hqm2"))))
@@ -403,7 +404,7 @@ replacement with improvements.")
(version "3.1.0")
(source (origin
(method url-fetch)
- (uri (string-append "https://archive.apache.org/dist/maven/wagon/"
+ (uri (string-append "mirror://apache/dist/maven/wagon/"
"wagon-" version "-source-release.zip"))
(sha256 (base32 "0r07j6xdzdnrvqnv8ida7dx1m05pznh5qgmcfcfpyvg9nxbj3l1n"))))
(build-system ant-build-system)
@@ -690,7 +691,7 @@ gets and puts artifacts through HTTP(S) using Apache HttpClient-4.x.")))
(version "3.6.1")
(source (origin
(method url-fetch)
- (uri (string-append "https://archive.apache.org/dist/maven/"
+ (uri (string-append "mirror://apache/dist/maven/"
"maven-3/" version "/source/"
"apache-maven-" version "-src.tar.gz"))
(sha256 (base32 "0grw9zp166ci53rd7qkyy2qmwmik37xhiz1z84jpm0msyvzj2n82"))
diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index e4a9521e63..e9c6c94cef 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -565,14 +565,14 @@ compromised.")
(define-public znc
(package
(name "znc")
- (version "1.8.0")
+ (version "1.8.1")
(source (origin
(method url-fetch)
(uri (string-append "http://znc.in/releases/archive/znc-"
version ".tar.gz"))
(sha256
(base32
- "0m5xf60r40pgbg9lyk56dafxj2hj149pn2wf8vzsp8xgq4kv5zcl"))))
+ "0hb1v167aa6gv5bcwz352l6b8gnd74ymjw92y4x882l099hzg59i"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index a26c4fc250..49f784f529 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1881,7 +1881,7 @@ export.")
(define-public pd
(package
(name "pd")
- (version "0.50-2")
+ (version "0.51-0")
(source (origin
(method url-fetch)
(uri
@@ -1889,23 +1889,25 @@ export.")
version ".src.tar.gz"))
(sha256
(base32
- "0dz6r6jy0zfs1xy1xspnrxxks8kddi9c7pxz4vpg2ygwv83ghpg5"))))
+ "0qzv4hjf4h7xx00ihnbl43pxa0fia9qkc8nwgzhqrs12jiljz6ps"))))
(build-system gnu-build-system)
(arguments
- `(#:tests? #f ; no "check" target
- #:configure-flags
- (list
- "--enable-jack"
- (string-append "--with-wish=" (string-append
- (assoc-ref %build-inputs "tk")
- "/bin/wish8.6")))
- #:phases
- (modify-phases %standard-phases
- (add-before 'configure 'fix-with-path
- (lambda _
- (substitute* "tcl/pd-gui.tcl"
- (("exec wish ") (string-append "exec " (which "wish8.6") " ")))
- #t)))))
+ (let ((wish (string-append "wish" (version-major+minor
+ (package-version tk)))))
+ `(#:tests? #f ; no "check" target
+ #:configure-flags
+ (list
+ "--enable-jack"
+ (string-append "--with-wish=" (string-append
+ (assoc-ref %build-inputs "tk")
+ "/bin/" ,wish)))
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'fix-with-path
+ (lambda _
+ (substitute* "tcl/pd-gui.tcl"
+ (("exec wish ") (string-append "exec " (which ,wish) " ")))
+ #t))))))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
@@ -1916,7 +1918,7 @@ export.")
`(("tk" ,tk)
("alsa-lib" ,alsa-lib)
("jack" ,jack-1)))
- (home-page "http://puredata.info")
+ (home-page "https://puredata.info")
(synopsis "Visual programming language for artistic performances")
(description
"Pure Data (aka Pd) is a visual programming language. Pd enables
@@ -3691,7 +3693,7 @@ plugins, a switch trigger, a toggle switch, and a peakmeter.")
("lv2" ,lv2)
("lilv" ,lilv)
("raul" ,raul-devel)
- ("ganv" ,ganv-devel)
+ ("ganv" ,ganv)
("suil" ,suil)
("serd" ,serd)
("sord" ,sord)
diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index 3ad68ad070..11344216aa 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -589,14 +589,14 @@ receiving NDP messages.")
(define-public ethtool
(package
(name "ethtool")
- (version "5.6")
+ (version "5.7")
(source (origin
(method url-fetch)
(uri (string-append "mirror://kernel.org/software/network/"
"ethtool/ethtool-" version ".tar.xz"))
(sha256
(base32
- "159r0hwax0qs5diayw2glxshqxrigk0v67hgmbq56ldddm91n3ya"))))
+ "0f9w0pqkvwn540rasmj6c8897g9gj2hmjnbkhpi9yf1s7jyvhkkj"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@@ -3106,7 +3106,7 @@ cables.")
(define-public haproxy
(package
(name "haproxy")
- (version "2.1.5")
+ (version "2.1.6")
(source (origin
(method url-fetch)
(uri (string-append "https://www.haproxy.org/download/"
@@ -3114,7 +3114,7 @@ cables.")
"/src/haproxy-" version ".tar.gz"))
(sha256
(base32
- "188ff33610jj11knjwjqwxci4p0i63n9k0l8bdb47ckahg2ll5s2"))))
+ "1pyz4gckdn8982vpb1iiw9agwp2s5p8wc0nn1qh1ic0wq3lrnpg6"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index b1c96f18e7..c1e6657dff 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -118,8 +118,8 @@
;; Note: the 'update-guix-package.scm' script expects this definition to
;; start precisely like this.
(let ((version "1.1.0")
- (commit "ab9e30039d9312285ea3f4ed43f81c9c2c0dae08")
- (revision 9))
+ (commit "141b5c162048f5cb52e8c90ff7c16a2e98babcfb")
+ (revision 10))
(package
(name "guix")
@@ -135,7 +135,7 @@
(commit commit)))
(sha256
(base32
- "0qb2haf5dyq5x1hcjyx58v455lzi6ffa68ldm0615jy25w5phmxq"))
+ "1j3vag994kj05b09a7w4lyas991a19hbbslcm9xvn5k2ilf4qskz"))
(file-name (string-append "guix-" version "-checkout"))))
(build-system gnu-build-system)
(arguments
diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm
index a59fb9dc75..6bd1e94c91 100644
--- a/gnu/packages/password-utils.scm
+++ b/gnu/packages/password-utils.scm
@@ -581,7 +581,7 @@ key URIs using the standard otpauth:// scheme.")
(define-public qtpass
(package
(name "qtpass")
- (version "1.2.3")
+ (version "1.3.2")
(source
(origin
(method git-fetch)
@@ -591,10 +591,15 @@ key URIs using the standard otpauth:// scheme.")
(file-name (git-file-name name version))
(sha256
(base32
- "1vfhfyccrxq9snyvayqfzm5rqik8ny2gysyv7nipc91kvhq3bhky"))))
+ "0748hjvhjrybi33ci3c8hcr74k9pdrf5jv8npf9hrsrmdyy1kr9x"))))
(build-system gnu-build-system)
(arguments
- `(#:phases
+ `(#:modules ((guix build gnu-build-system)
+ (guix build qt-utils)
+ (guix build utils))
+ #:imported-modules (,@%gnu-build-system-modules
+ (guix build qt-utils))
+ #:phases
(modify-phases %standard-phases
(replace 'configure
(lambda* (#:key inputs outputs #:allow-other-keys)
@@ -630,6 +635,10 @@ key URIs using the standard otpauth:// scheme.")
(string-append icons "/qtpass-icon.svg"))
(install-file "qtpass.1" man)
#t)))
+ (add-after 'install 'wrap-qt
+ (lambda* (#:key outputs #:allow-other-keys)
+ (wrap-qt-program (assoc-ref outputs "out") "qtpass")
+ #t))
(add-before 'check 'check-setup
;; Make Qt render "offscreen", required for tests.
(lambda _
diff --git a/gnu/packages/patches/dhall-remove-network-tests.patch b/gnu/packages/patches/dhall-remove-network-tests.patch
deleted file mode 100644
index c260e7844d..0000000000
--- a/gnu/packages/patches/dhall-remove-network-tests.patch
+++ /dev/null
@@ -1,97 +0,0 @@
-diff a/dhall-lang/tests/import/failure/referentiallyInsane.dhall b/dhall-lang/tests/import/failure/referentiallyInsane.dhall
---- a/dhall-lang/tests/import/failure/referentiallyInsane.dhall
-+++ /dev/null
-@@ -1,13 +0,0 @@
--{- The following remote import attempts to import an environment variable, which
-- must be disallowed by the referential sanity check
--
-- One reason for doing this is to protect against remote imports exfiltrating
-- environment variables (such as via custom headers). Only referentially
-- opaque imports (i.e. local imports) have permission to refer to other
-- referentially opaque imports in order to protect against this attack.
--
-- The referential sanity check also ensures that remote imports are
-- referentially transparent. Or in other words, any import that is globally
-- addressable must have a meaning that is not context-sensitive.
---}
--https://raw.githubusercontent.com/dhall-lang/dhall-lang/master/tests/import/data/referentiallyOpaque.dhall
-diff a/dhall-lang/tests/import/success/customHeadersA.dhall b/dhall-lang/tests/import/success/customHeadersA.dhall
---- a/dhall-lang/tests/import/success/customHeadersA.dhall
-+++ /dev/null
-@@ -1,3 +0,0 @@
--https://httpbin.org/user-agent
-- using [ { mapKey = "User-Agent", mapValue = "Dhall" } ]
-- as Text
-diff a/dhall-lang/tests/import/success/noHeaderForwardingA.dhall b/dhall-lang/tests/import/success/noHeaderForwardingA.dhall
---- a/dhall-lang/tests/import/success/noHeaderForwardingA.dhall
-+++ /dev/null
-@@ -1,6 +0,0 @@
--{- The purpose of this test is to verify that the custom headers supplied to
-- this import are not forwarded to the transitive import of
-- https://httpbin.org/user-agent
---}
--https://raw.githubusercontent.com/dhall-lang/dhall-lang/master/tests/import/success/customHeadersA.dhall
-- using [ { mapKey = "User-Agent", mapValue = "Secret" } ]
-diff a/dhall-lang/tests/import/success/unit/RemoteAsTextA.dhall b/dhall-lang/tests/import/success/unit/RemoteAsTextA.dhall
---- a/dhall-lang/tests/import/success/unit/RemoteAsTextA.dhall
-+++ /dev/null
-@@ -1 +0,0 @@
--https://raw.githubusercontent.com/dhall-lang/dhall-lang/0b983b92aa2222dc3e292c20550ee37dea3f41df/tests/import/data/example.txt as Text
-diff a/dhall-lang/tests/import/success/unit/SimpleRemoteA.dhall b/dhall-lang/tests/import/success/unit/SimpleRemoteA.dhall
---- a/dhall-lang/tests/import/success/unit/SimpleRemoteA.dhall
-+++ /dev/null
-@@ -1 +0,0 @@
--https://raw.githubusercontent.com/dhall-lang/dhall-lang/0b983b92aa2222dc3e292c20550ee37dea3f41df/tests/import/data/simple.dhall
-diff a/dhall-lang/tests/import/success/unit/asLocation/RemoteChain1A.dhall b/dhall-lang/tests/import/success/unit/asLocation/RemoteChain1A.dhall
---- a/dhall-lang/tests/import/success/unit/asLocation/RemoteChain1A.dhall
-+++ /dev/null
-@@ -1 +0,0 @@
--https://raw.githubusercontent.com/dhall-lang/dhall-lang/0b983b92aa2222dc3e292c20550ee37dea3f41df/tests/import/data/simpleLocation.dhall
-diff a/dhall-lang/tests/import/success/unit/asLocation/RemoteChain2A.dhall b/dhall-lang/tests/import/success/unit/asLocation/RemoteChain2A.dhall
---- a/dhall-lang/tests/import/success/unit/asLocation/RemoteChain2A.dhall
-+++ /dev/null
-@@ -1 +0,0 @@
--https://raw.githubusercontent.com/Nadrieril/dhall-rust/f7d8c64a9799f139ad65427c2518376adb9e2e2f/dhall/tests/import/success/unit/asLocation/Canonicalize3A.dhall
-diff a/dhall-lang/tests/import/success/unit/asLocation/RemoteChain3A.dhall b/dhall-lang/tests/import/success/unit/asLocation/RemoteChain3A.dhall
---- a/dhall-lang/tests/import/success/unit/asLocation/RemoteChain3A.dhall
-+++ /dev/null
-@@ -1 +0,0 @@
--https://raw.githubusercontent.com/Nadrieril/dhall-rust/f7d8c64a9799f139ad65427c2518376adb9e2e2f/dhall/tests/import/success/unit/asLocation/Canonicalize5A.dhall
-diff a/dhall-lang/tests/import/success/unit/asLocation/RemoteChainEnvA.dhall b/dhall-lang/tests/import/success/unit/asLocation/RemoteChainEnvA.dhall
---- a/dhall-lang/tests/import/success/unit/asLocation/RemoteChainEnvA.dhall
-+++ /dev/null
-@@ -1,5 +0,0 @@
--{-
-- This test verifies that `env:VAR as Location` isn't rejected as referentially opaque,
-- as `env:VAR` on its own would.
---}
--https://raw.githubusercontent.com/Nadrieril/dhall-rust/f7d8c64a9799f139ad65427c2518376adb9e2e2f/dhall/tests/import/success/unit/asLocation/EnvA.dhall
-diff a/dhall-lang/tests/import/success/unit/asLocation/RemoteChainMissingA.dhall b/dhall-lang/tests/import/success/unit/asLocation/RemoteChainMissingA.dhall
---- a/dhall-lang/tests/import/success/unit/asLocation/RemoteChainMissingA.dhall
-+++ /dev/null
-@@ -1,6 +0,0 @@
--{- This test verifies that `missing as Location` succeeds when chained since:
-- * The `missing` is never actually resolved (due to the `as Location`)
-- * The `missing` should be treated as referentially transparent (and therefore
-- be a valid transitive dependency of a remote import)
---}
--https://raw.githubusercontent.com/Nadrieril/dhall-rust/f7d8c64a9799f139ad65427c2518376adb9e2e2f/dhall/tests/import/success/unit/asLocation/MissingA.dhall
-diff a/dhall-lang/tests/type-inference/success/CacheImportsA.dhall b/dhall-lang/tests/type-inference/success/CacheImportsA.dhall
---- a/dhall-lang/tests/type-inference/success/CacheImportsA.dhall
-+++ /dev/null
-@@ -1,6 +0,0 @@
--{-
-- This URL returns (probably) a different result for each request. This test
-- ensures that import results for a given URL are correctly cached within an
-- execution of dhall.
---}
--let _ = assert : https://csrng.net/csrng/csrng.php?min=0&max=1000 as Text === https://csrng.net/csrng/csrng.php?min=0&max=1000 as Text in 0
-diff a/dhall-lang/tests/type-inference/success/CacheImportsCanonicalizeA.dhall b/dhall-lang/tests/type-inference/success/CacheImportsCanonicalizeA.dhall
---- a/dhall-lang/tests/type-inference/success/CacheImportsCanonicalizeA.dhall
-+++ /dev/null
-@@ -1,5 +0,0 @@
--{-
-- This URL returns (probably) a different result for each request. This test
-- ensures that import locations are canonicalized before being cached.
---}
--let _ = assert : https://csrng.net/csrng/csrng.php?min=0&max=1000 as Text === https://csrng.net/csrng/../csrng/csrng.php?min=0&max=1000 as Text in 0
diff --git a/gnu/packages/patches/exercism-disable-self-update.patch b/gnu/packages/patches/exercism-disable-self-update.patch
new file mode 100644
index 0000000000..a96cbfbc55
--- /dev/null
+++ b/gnu/packages/patches/exercism-disable-self-update.patch
@@ -0,0 +1,79 @@
+From bc22f7d43c12c5f79c71b0319666e71f29d61322 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Jakub=20K=C4=85dzio=C5=82ka?= <kuba@kadziolka.net>
+Date: Mon, 25 May 2020 18:53:04 +0200
+Subject: [PATCH] Disable self-update.
+
+Based on a Fedora patch by Elliott Sales de Andrade.
+---
+ cli/cli.go | 44 +-------------------------------------------
+ 1 file changed, 1 insertion(+), 43 deletions(-)
+
+diff --git a/cli/cli.go b/cli/cli.go
+index 4312eb0..5f62297 100644
+--- a/cli/cli.go
++++ b/cli/cli.go
+@@ -10,13 +10,10 @@ import (
+ "io"
+ "io/ioutil"
+ "net/http"
+- "runtime"
+ "strings"
+ "time"
+
+ "github.com/blang/semver"
+- "github.com/exercism/cli/debug"
+- update "github.com/inconshreveable/go-update"
+ )
+
+ var (
+@@ -95,46 +92,7 @@ func (c *CLI) IsUpToDate() (bool, error) {
+
+ // Upgrade allows the user to upgrade to the latest version of the CLI.
+ func (c *CLI) Upgrade() error {
+- var (
+- OS = osMap[runtime.GOOS]
+- ARCH = archMap[runtime.GOARCH]
+- )
+-
+- if OS == "" || ARCH == "" {
+- return fmt.Errorf("unable to upgrade: OS %s ARCH %s", OS, ARCH)
+- }
+-
+- buildName := fmt.Sprintf("%s-%s", OS, ARCH)
+- if BuildARCH == "arm" {
+- if BuildARM == "" {
+- return fmt.Errorf("unable to upgrade: arm version not found")
+- }
+- buildName = fmt.Sprintf("%s-v%s", buildName, BuildARM)
+- }
+-
+- var downloadRC *bytes.Reader
+- for _, a := range c.LatestRelease.Assets {
+- if strings.Contains(a.Name, buildName) {
+- debug.Printf("Downloading %s\n", a.Name)
+- var err error
+- downloadRC, err = a.download()
+- if err != nil {
+- return fmt.Errorf("error downloading executable: %s", err)
+- }
+- break
+- }
+- }
+- if downloadRC == nil {
+- return fmt.Errorf("no executable found for %s/%s%s", BuildOS, BuildARCH, BuildARM)
+- }
+-
+- bin, err := extractBinary(downloadRC, OS)
+- if err != nil {
+- return err
+- }
+- defer bin.Close()
+-
+- return update.Apply(bin, update.Options{})
++ return fmt.Errorf("Please use Guix to update Exercism")
+ }
+
+ func (c *CLI) fetchLatestRelease() error {
+--
+2.26.2
+
diff --git a/gnu/packages/pep.scm b/gnu/packages/pep.scm
new file mode 100644
index 0000000000..2bcedf9979
--- /dev/null
+++ b/gnu/packages/pep.scm
@@ -0,0 +1,349 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016, 2020 Hartmut Goebel <h.goebel@crazy-compilers.com>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages pep)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix git-download)
+ #:use-module (guix hg-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix build-system python)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages documentation)
+ #:use-module (gnu packages java)
+ #:use-module (gnu packages linux)
+ #:use-module (gnu packages mail) ; for libetpan
+ #:use-module (gnu packages nettle)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages sequoia)
+ #:use-module (gnu packages sqlite)
+ #:use-module (gnu packages tls)
+ #:use-module (gnu packages xml))
+
+(define-public yml2
+ (package
+ (name "yml2")
+ (version "2.6.3")
+ (source (origin
+ (method hg-fetch)
+ (uri (hg-reference
+ (url "https://pep.foundation/dev/repos/yml2")
+ (changeset version)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32 "10jjjyq1mz18zkzvxd62aba00h69gd9cglisqcvb81j67ml2v1bx"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-lxml" ,python-lxml)))
+ (home-page "https://fdik.org/yml/")
+ (synopsis "Use a Domain Specific Language for XML without defining
+a grammar")
+ (description "The YML compiler is a small Python script. It
+provides the command line front end yml2c. As default, it compiles
+your script and outputs to stdout, that usually is the terminal. Your
+shell provides options to redirect the output into a pipe or a file.")
+ (license license:gpl2)))
+
+(define fdik-libetpan
+ ;; pEp Engine requires libetpan with a set of patches that have not been
+ ;; upstreamed yet.
+ (let ((commit "210ba2b3b310b8b7a6ee4a4e35e50f7fa379643f") ; 2020-06-03
+ (checksum "00000nij3ray7nssvq0lzb352wmnab8ffzk7dgff2c68mvjbh1l6")
+ (revision "5"))
+ (package
+ (inherit libetpan)
+ (name "fdik-libetpan")
+ (version (string-append "1.6-" revision "." (string-take commit 8)))
+ (source
+ (origin
+ (inherit (package-source libetpan))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/fdik/libetpan")
+ (commit commit)))
+ (file-name (string-append name "-" version))
+ (sha256 (base32 checksum)))))))
+
+(define sequoia4pEp
+ ;; Currently pEp Engine requires sequoia in not-so-current version
+ (package/inherit sequoia
+ (name "sequoia")
+ (version "0.15.0-pEp")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.com/sequoia-pgp/sequoia.git")
+ (commit "0eb1b6cd846ea8c36b3dfdf01ec88383fc64f2fe")))
+ (sha256
+ (base32 "06dqs9whwp9lfibwp8dqm0aw4nm3s3v4jp2n4fz51zcvsld40nfh"))
+ (file-name (git-file-name name version))))))
+
+(define-public pep-engine
+ (package
+ (name "pep-engine")
+ (version "2.0.6")
+ (source
+ (origin
+ (method hg-fetch)
+ (uri (hg-reference
+ (url "https://pep.foundation/dev/repos/pEpEngine")
+ (changeset "ebb62ba262dd"))) ;; r4721
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32 "0ljf79j4ng7l8w6pbdcrfzb4yk51zslypvq0n72ib1d7grqvnagi"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:parallel-build? #f
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'configure
+ ;; pEpEngie does not use autotools and configure,
+ ;; but a local.conf. We need to tweak the values there.
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (yml2 (assoc-ref inputs "yml2")))
+ (with-output-to-file "local.conf"
+ (lambda ()
+ (format #t "
+PREFIX=~a
+PER_MACHINE_DIRECTORY=${PREFIX}/share/pEp
+SYSTEM_DB=~a/share/pEp/system.db
+ASN1C=~a
+YML2_PATH=~a
+OPENPGP=SEQUOIA
+"
+ out out (which "asn1c")
+ (string-append yml2 "/bin"))))
+ #t)))
+ (delete 'check)
+ (add-after 'install 'install-db
+ (lambda _
+ (invoke "make" "-C" "db" "install"))))))
+ (native-inputs
+ `(("asn1c" ,asn1c) ; >= 0.9.27
+ ("pkg-config" ,pkg-config)
+ ("yml2" ,yml2)))
+ (inputs
+ `(("libetpan" ,fdik-libetpan)
+ ("libiconv" ,libiconv)
+ ("nettle" ,nettle)
+ ("openssl" ,openssl)
+ ("sequoia" ,sequoia4pEp)
+ ("sqlite3" ,sqlite)
+ ("util-linux" ,util-linux "lib"))) ;; uuid.h
+ (home-page "https://pep.foundation/")
+ (synopsis "Library for automatic key management and encryption of
+messages")
+ (description "The p≡p engine is the core part of p≡p (pretty Easy
+privacy).")
+ (license ;; code: GPL 3, docs: CC-BY-SA
+ (list license:gpl3 license:cc-by-sa3.0))))
+
+(define-public libpepadapter
+ (package
+ (name "libpepadapter")
+ (version "2.0.2")
+ (source
+ (origin
+ (method hg-fetch)
+ (uri (hg-reference
+ (url "https://pep.foundation/dev/repos/libpEpAdapter")
+ (changeset "e8fe371c870a"))) ;; r168
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32 "1mlpavjbnmslvmr5jxcvpjgb2x40nhmxjb10hza3kn4qzj0k1pjz"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:test-target "test"
+ #:tests? #f ;; building the tests fails
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'configure
+ ;; libpEpAdapter does not use autotools and configure,
+ ;; but a local.conf. We need to tweak the values there.
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (engine (assoc-ref inputs "pep-engine")))
+ (with-output-to-file "local.conf"
+ (lambda _ ;()
+ (format #t "
+PREFIX=~a
+ENGINE_LIB_PATH=~a/lib
+ENGINE_INC_PATH=~a/include
+" out engine engine))))
+ #t)))))
+ (inputs
+ `(("pep-engine" ,pep-engine)))
+ (home-page "https://pep.foundation/")
+ (synopsis "Library for building p≡p adapters")
+ (description "This C++ library provides common structures used in p≡p
+(pretty Easy privacy) adapters.")
+ (license license:bsd-3)))
+
+(define-public python-pep-adapter
+ (package
+ (name "python-pep-adapter")
+ (version "2.0.5")
+ (source
+ (origin
+ (method hg-fetch)
+ (uri (hg-reference
+ (url "https://pep.foundation/dev/repos/pEpPythonAdapter")
+ (changeset "66df0e5b9405"))) ;; r374
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32 "107i1s8jf8gyhpmqcs64q9csxa3fwc8g7s57iyccqb4czw8gph6d"))))
+ (build-system python-build-system)
+ (arguments
+ `(;; Adding configure-flags does not work, running `build_ext`
+ ;; with these flags, neither does adding the options to
+ ;; `setup.cfg`: Either `build` or `install` fails (since
+ ;; flags are given or missing), or "command 'BuildExtCommand'
+ ;; has no such option 'pep_engine"
+ ;; '(#:configure-flags
+ ;; (list (string-append "--with-pEp-engine="
+ ;; (assoc-ref inputs "pEpEngine"))
+ ;; (string-append "--with-pEp-libadapter="
+ ;; (assoc-ref inputs "libpEpAdapter"))
+ ;; ;;(string-append "--boost="
+ ;; (assoc-ref inputs "boost")) not supported
+ ;; (string-append "--with-asn1c-share="
+ ;; (assoc-ref inputs "asn1c") "/share"))
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'fix-setup.py
+ (lambda _
+ (substitute* "setup.py"
+ (("^(\\s+SYS_INCLUDES = )\\['/usr.*" _ a)
+ (string-append a "os.getenv('CPATH', '').split(os.pathsep)\n"))
+ (("^(\\s+SYS_LIB_PREFIXES = )\\['/usr.*" _ a)
+ (string-append a "os.getenv('LIBRARY_PATH', '').split(os.pathsep)\n"))
+ (("^(\\s+SYS_SHARES = )\\['/usr.*" _ a)
+ (string-append a "['" (assoc-ref %build-inputs "asn1c") "/share']\n")))
+ #t)))))
+ (inputs
+ `(("asn1c" ,asn1c)
+ ("boost-python" ,boost-with-python3)
+ ("libpepadapter" ,libpepadapter)
+ ("pep-engine" ,pep-engine)))
+ (home-page "https://pep.foundation/")
+ (synopsis "Python adapter for p≡p (pretty Easy Privacy)")
+ (description "The p≡p Python adapter is an adaptor interface to the p≡p
+(pretty Easy privacy) engine.")
+ (license license:gpl3)))
+
+(define-public java-pep-adapter
+ (package
+ (name "java-pep-adapter")
+ (version "2.0.5")
+ (source
+ (origin
+ (method hg-fetch)
+ (uri (hg-reference
+ (url "https://pep.foundation/dev/repos/pEpJNIAdapter")
+ (changeset "534537c9cd50"))) ;; r763
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32 "107ldpssc80bq8kndn2n000000gphj4lqagaiv3fddlfph4vji48"))))
+ (build-system gnu-build-system)
+ (outputs '("out" "doc"))
+ (arguments
+ `(#:test-target "test"
+ #:make-flags (list "doxy-all")
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'fix-includes
+ (lambda _
+ (substitute* "src/jniutils.hh"
+ (("#pragma once\n" line)
+ (string-append line
+ "#include <mutex>\n"
+ "#include <cassert>\n"
+ "#include <cstring>\n")))
+ #t))
+ (add-before 'configure 'pin-shared-lib-path
+ (lambda* (#:key outputs #:allow-other-keys)
+ (substitute* "src/foundation/pEp/jniadapter/AbstractEngine.java"
+ (("System.loadLibrary\\(\"pEpJNI\"\\);")
+ (string-append "System.load(\""
+ (assoc-ref outputs "out")
+ "/lib/libpEpJNI.so" "\");")))
+ #t))
+ (replace 'configure
+ ;; pEpJNIAdapter does not use autotools and configure,
+ ;; but a local.conf. We need to tweak the values there.
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (engine (assoc-ref inputs "pep-engine"))
+ (libadapter (assoc-ref inputs "libpepadapter"))
+ (openjdk (assoc-ref inputs "openjdk")))
+ (with-output-to-file "local.conf"
+ (lambda _ ;()
+ (format #t "
+PREFIX=~a
+ENGINE_LIB_PATH=~a/lib
+ENGINE_INC_PATH=~a/include
+AD_LIB_PATH=~a/lib
+AD_INC_PATH=~a/include
+YML2_PROC=~a
+JAVA_HOME=~a
+"
+ out engine engine libadapter libadapter
+ (which "yml2proc") openjdk)))
+ (substitute* "src/Makefile" ;; suppress some warnings
+ (("^\\s+OLD_JAVA=") " xxx_OLD_JAVA="))
+ #t)))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (libout (string-append out "/lib/"))
+ (javaout (string-append out "/share/java/")))
+ (mkdir-p libout)
+ (mkdir-p javaout)
+ (copy-file "src/libpEpJNI.so"
+ (string-append libout "/libpEpJNI.so"))
+ (copy-file "src/pEp.jar" (string-append javaout "/pEp.jar"))
+ #t)))
+ (add-after 'install 'install-docs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "doc"))
+ (docout (string-append out "/share/doc/pEp-JNI-adapter"))
+ (cxxout (string-append docout "/cxx"))
+ (javaout (string-append docout "/java")))
+ (mkdir-p cxxout)
+ (mkdir-p javaout)
+ (copy-recursively "doc/doxygen/cxx/html" cxxout)
+ (copy-recursively "doc/doxygen/java/html" javaout)
+ #t))))))
+ (native-inputs
+ `(("doxygen" ,doxygen)
+ ("openjdk" ,openjdk9 "jdk")
+ ("which" ,which)
+ ("yml2" ,yml2)))
+ (inputs
+ `(("libpepadapter" ,libpepadapter)
+ ("pep-engine" ,pep-engine)
+ ("util-linux" ,util-linux))) ;; uuid.h
+ (home-page "https://pep.foundation/")
+ (synopsis "Java adapter for p≡p (pretty Easy Privacy)")
+ (description "The p≡p JNI adapter is a Java adapter interface to the p≡p
+(pretty Easy privacy) engine.")
+ (license license:gpl3)))
diff --git a/gnu/packages/php.scm b/gnu/packages/php.scm
index 8cd8cace8c..6d9f46e960 100644
--- a/gnu/packages/php.scm
+++ b/gnu/packages/php.scm
@@ -60,7 +60,7 @@
(define-public php
(package
(name "php")
- (version "7.4.6")
+ (version "7.4.7")
(home-page "https://secure.php.net/")
(source (origin
(method url-fetch)
@@ -68,7 +68,7 @@
"php-" version ".tar.xz"))
(sha256
(base32
- "0ck8s3zlqnkswwmz3p1bgma7ddjsx9j9sdlz5di1jc7nhhpk4h6p"))
+ "1brgnp11vpy1619cx0cncih02rg2k20wllm21vxbd2nd4j7qymak"))
(modules '((guix build utils)))
(snippet
'(with-directory-excursion "ext"
diff --git a/gnu/packages/rpc.scm b/gnu/packages/rpc.scm
index 28c61b54f9..de7d08ae4d 100644
--- a/gnu/packages/rpc.scm
+++ b/gnu/packages/rpc.scm
@@ -25,10 +25,16 @@
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system cmake)
+ #:use-module (guix build-system gnu)
#:use-module (guix build-system python)
#:use-module (gnu packages adns)
+ #:use-module (gnu packages autotools)
+ #:use-module (gnu packages bison)
+ #:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpp)
+ #:use-module (gnu packages flex)
+ #:use-module (gnu packages pkg-config)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
@@ -192,3 +198,46 @@ browsers to backend services.")
(description "This package provides a Python library for communicating
with the HTTP/2-based RPC framework gRPC.")
(license license:asl2.0)))
+
+(define-public apache-thrift
+ (package
+ (name "apache-thrift")
+ (version "0.13.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/apache/thrift.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "17ckl7p7s3ga33yrjisilsimp80ansqxl54wvpkv0j7vx2zvc13y"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:tests? #f
+ #:configure-flags
+ (list (string-append "--with-boost="
+ (assoc-ref %build-inputs "boost")))))
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("libtool" ,libtool)
+ ("pkg-config" ,pkg-config)
+ ("flex" ,flex)
+ ("bison" ,bison)))
+ (inputs
+ `(("boost" ,boost)
+ ("libressl" ,libressl)))
+ (outputs '("out" "lib" "include"))
+ (home-page "https://thrift.apache.org/")
+ (synopsis
+ "Lightweight, language-independent software stack for point-to-point
+RPC")
+ (description
+ "Thrift provides clean abstractions and implementations for data
+transport, data serialization, and application level processing. The code
+generation system takes a simple definition language as input and generates
+code across programming languages that uses the abstracted stack to build
+interoperable RPC clients and servers.")
+ (license license:asl2.0)))
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm
index bee7a2e917..be81715116 100644
--- a/gnu/packages/serialization.scm
+++ b/gnu/packages/serialization.scm
@@ -467,14 +467,14 @@ game development and other performance-critical applications.")
(define-public python-feather-format
(package
(name "python-feather-format")
- (version "0.4.0")
+ (version "0.4.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "feather-format" version))
(sha256
(base32
- "1adivm5w5ji4qv7hq7942vqlk8l2wgw87bdlsia771z14z3zp857"))))
+ "00w9hwz7sj3fkdjc378r066vdy6lpxmn6vfac3qx956k8lvpxxj5"))))
(build-system python-build-system)
(propagated-inputs
`(("python-pandas" ,python-pandas)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index fd898a32c5..cd60ce87b0 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -184,7 +184,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.")
(define r-with-tests
(package
(name "r-with-tests")
- (version "4.0.0")
+ (version "4.0.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
@@ -192,7 +192,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.")
version ".tar.gz"))
(sha256
(base32
- "0h1995smlyiyhx7gpg9paxsfqrcn6g9bbp5h9r47i6an3clv1gh6"))))
+ "0ckgpihkih4b44rx48hpg9p6bv0w67j5z3qc8s4giy6qv2j29zlm"))))
(build-system gnu-build-system)
(arguments
`(#:disallowed-references (,tzdata-for-tests)
@@ -513,14 +513,14 @@ code for possible problems.")
(define-public r-foreign
(package
(name "r-foreign")
- (version "0.8-79")
+ (version "0.8-80")
(source
(origin
(method url-fetch)
(uri (cran-uri "foreign" version))
(sha256
(base32
- "1d5rk4k3khjrir1b4ciridd6vdpcgzi35r7p7ra4ky7vbaabcdmg"))))
+ "0wjdi3qn9famsxmpdyyahidaid0yhxlpx4ad9k8vrxhxd6xspasp"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/foreign")
(synopsis "Read data stored by other statistics software")
@@ -599,13 +599,13 @@ and operations on them using LAPACK and SuiteSparse.")
(define-public r-nlme
(package
(name "r-nlme")
- (version "3.1-147")
+ (version "3.1-148")
(source
(origin
(method url-fetch)
(uri (cran-uri "nlme" version))
(sha256
- (base32 "1rqc3wy3lmy0wczsvsn8yszzsxhppfwg4iznb1j6ki2qawpdij7g"))))
+ (base32 "1cmf43r82kar1hpj9dhqfi3rbjka0z5s6cbdy7fklwh99xj3phkp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -1097,13 +1097,13 @@ using just two functions: melt and dcast (or acast).")
(define-public r-ggplot2
(package
(name "r-ggplot2")
- (version "3.3.0")
+ (version "3.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggplot2" version))
(sha256
- (base32 "0j21am605kqqzlwhm45kaj0m2irnmy2vz0j7kzi9f0qdzrv3q3ij"))))
+ (base32 "04wvswadlry2n9gnfqlpdqsav1wllnlzb5c9w9ydynllv4vkwfm0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
@@ -1117,6 +1117,8 @@ using just two functions: melt and dcast (or acast).")
("r-scales" ,r-scales)
("r-svglite" ,r-svglite) ; Needed for 'ggsave'
("r-withr" ,r-withr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://ggplot2.tidyverse.org")
(synopsis "An implementation of the grammar of graphics")
(description
@@ -1665,27 +1667,25 @@ and printing capabilities than traditional data frames.")
(define-public r-dplyr
(package
(name "r-dplyr")
- (version "0.8.5")
+ (version "1.0.0")
(source (origin
(method url-fetch)
(uri (cran-uri "dplyr" version))
(sha256
(base32
- "0602b4a9nffxx67q57csqp87nkrv33nn9wlaw1458yys9fzx6l2p"))))
+ "1wxi7pzw1mqkgay2s9hwlkpkxfzydngf56wrf7k93n14rlqm3dmz"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-assertthat" ,r-assertthat)
- ("r-bh" ,r-bh)
- ("r-ellipsis" ,r-ellipsis)
+ `(("r-ellipsis" ,r-ellipsis)
+ ("r-generics" ,r-generics)
("r-glue" ,r-glue)
+ ("r-lifecycle" ,r-lifecycle)
("r-magrittr" ,r-magrittr)
- ("r-pkgconfig" ,r-pkgconfig)
- ("r-plogr" ,r-plogr)
("r-r6" ,r-r6)
- ("r-rcpp" ,r-rcpp)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)
- ("r-tidyselect" ,r-tidyselect)))
+ ("r-tidyselect" ,r-tidyselect)
+ ("r-vctrs" ,r-vctrs)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/hadley/dplyr")
@@ -1703,21 +1703,23 @@ database.")
(define-public r-dbplyr
(package
(name "r-dbplyr")
- (version "1.4.3")
+ (version "1.4.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "dbplyr" version))
(sha256
(base32
- "1si8sahr1kwq1xgjzi9klkahad07pyrsngy75y1f74f64907pb39"))))
+ "1v0p0557n6bz84nq9jc4182k00mdd1hvz7h4w3bbg81z0fmpj0d8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
+ ("r-blob" ,r-blob)
("r-dbi" ,r-dbi)
("r-dplyr" ,r-dplyr)
("r-glue" ,r-glue)
("r-lifecycle" ,r-lifecycle)
+ ("r-magrittr" ,r-magrittr)
("r-purrr" ,r-purrr)
("r-r6" ,r-r6)
("r-rlang" ,r-rlang)
@@ -2092,14 +2094,14 @@ limited to R.")
(define-public r-backports
(package
(name "r-backports")
- (version "1.1.6")
+ (version "1.1.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "backports" version))
(sha256
(base32
- "170rphqq28j0pcr28g6dxv3isp436ajhyzkpri31pn0lfm3szs6h"))))
+ "02vfkqm1kw54y1qax8cmiyg2nk6bmh8j87fc3j22k7852s3y4xxj"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/backports")
(synopsis "Reimplementations of functions introduced since R 3.0.0")
@@ -2589,13 +2591,13 @@ well as additional utilities such as panel and axis annotation functions.")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.9.870.2.0")
+ (version "0.9.900.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "1r7iajxvbyvslsy16rqacc95azmjciw9lvcq31xl97fl09kmsq5v"))))
+ "1zisw2yrb9qmmrs7q8y83mrm7lh1c2786h70gs8jwc0si16x0lq5"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
(propagated-inputs
@@ -2681,13 +2683,13 @@ certain criterion, e.g., it contains a certain regular file.")
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "2.1")
+ (version "2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
- (base32 "0pa5xs0vzwn9vsgysjqbks9v5lbqphxh5agciskllibc40hhwigg"))))
+ (base32 "196r3hq1gcr6iamxllq4k40cb109b16ng24ky0q68bwrll80q1mh"))))
(properties `((upstream-name . "rmarkdown")))
(build-system r-build-system)
(propagated-inputs
@@ -2702,6 +2704,8 @@ certain criterion, e.g., it contains a certain regular file.")
("r-xfun" ,r-xfun)
("r-yaml" ,r-yaml)
("ghc-pandoc" ,ghc-pandoc)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://rmarkdown.rstudio.com")
(synopsis "Convert R Markdown documents into a variety of formats")
(description
@@ -3229,16 +3233,17 @@ analysis of large sparse or dense matrices.")
(define-public r-glmnet
(package
(name "r-glmnet")
- (version "3.0-2")
+ (version "4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmnet" version))
(sha256
- (base32 "0b3nnfzp8dxcdkvxr0yvy6d58yk3xg4kz1wqa42bxqppbakmd2gl"))))
+ (base32 "1vy8v6filhw9sflk8wwnbgz2mryg70ml4iq4y1c34dlwxczcbzv8"))))
(build-system r-build-system)
(native-inputs
- `(("gfortran" ,gfortran)))
+ `(("gfortran" ,gfortran)
+ ("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-foreach" ,r-foreach)
("r-matrix" ,r-matrix)
@@ -3572,13 +3577,13 @@ vignettes.")
(define-public r-mvtnorm
(package
(name "r-mvtnorm")
- (version "1.1-0")
+ (version "1.1-1")
(source (origin
(method url-fetch)
(uri (cran-uri "mvtnorm" version))
(sha256
(base32
- "0pfb6qk4yb6xaya8i1wvx6dnc3jj4s2g94sq2kzv4p8zn4pf24l1"))))
+ "1pj51mi0g6ip7a2nhzc93yv9289kaayvspjvsbgbgarvx7axlrg9"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -3699,14 +3704,14 @@ selection.")
(define-public r-tidyr
(package
(name "r-tidyr")
- (version "1.0.3")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyr" version))
(sha256
(base32
- "18ypk63nifp5jj5d9880m49zdv7n4a18gac59wj5z5xk6qr7vfal"))))
+ "0vqj5dakb35axv4l0yrihpa16vnz2b5bhaaqg7l0gsqbb04qcb00"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@@ -5215,13 +5220,13 @@ bootstrap test for generalized linear mixed models.")
(define-public r-cardata
(package
(name "r-cardata")
- (version "3.0-3")
+ (version "3.0-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "carData" version))
(sha256
- (base32 "0cg2yxzn0pdjqykr60my1fzpfkqac21fll5hv3m9w5c9sayq8swq"))))
+ (base32 "09270j39n4jpswxqps20b12zaj8dz4rrqpk2l2j5bnf1xzizb9nd"))))
(properties `((upstream-name . "carData")))
(build-system r-build-system)
(home-page "https://r-forge.r-project.org/projects/car/")
@@ -5234,13 +5239,13 @@ Companion to Applied Regression, Third Edition, Sage.")
(define-public r-car
(package
(name "r-car")
- (version "3.0-7")
+ (version "3.0-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "car" version))
(sha256
- (base32 "11sfk1l41j27mrfy16g7b02c570n3gy9icvpcrfjh1biykqa565d"))))
+ (base32 "0ig1691kxbzkrsq8xi5a6fq2f0vq22j1dn54jxdkldqr5vri1m57"))))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
@@ -5284,18 +5289,49 @@ computations taking place in C++ code, and support for interrupting those comput
even in multithreaded code, typically using OpenMP.")
(license license:gpl3+)))
+(define-public r-tmvnsim
+ (package
+ (name "r-tmvnsim")
+ (version "1.0-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "tmvnsim" version))
+ (sha256
+ (base32
+ "03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"))))
+ (properties `((upstream-name . "tmvnsim")))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://www.r-project.org")
+ (synopsis "Truncated multivariate normal simulation")
+ (description
+ "This package implements importance sampling from the truncated
+multivariate normal using the @dfn{Geweke-Hajivassiliou-Keane} (GHK)
+simulator. Unlike Gibbs sampling which can get stuck in one truncation
+sub-region depending on initial values, this package allows truncation based
+on disjoint regions that are created by truncation of absolute values. The
+GHK algorithm uses simple Cholesky transformation followed by recursive
+simulation of univariate truncated normals hence there are also no convergence
+issues. Importance sample is returned along with sampling weights, based on
+which, one can calculate integrals over truncated regions for multivariate
+normals.")
+ (license license:gpl2)))
+
(define-public r-mnormt
(package
(name "r-mnormt")
- (version "1.5-7")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mnormt" version))
(sha256
(base32
- "1y0vlvh02wza2wvfd29wxjlw3jg9rnwnx3kph5qz4179kz87fgfg"))))
+ "1gxhma0zqsx5pkc0871vszq1y7akwdmpm8rhws5b3gr6w9mx4agf"))))
(build-system r-build-system)
+ (propagated-inputs
+ `(("r-tmvnsim" ,r-tmvnsim)))
(native-inputs
`(("gfortran" ,gfortran)))
(home-page "http://azzalini.stat.unipd.it/SW/Pkg-mnormt")
@@ -5330,14 +5366,14 @@ first and second order derivatives.")
(define-public r-sn
(package
(name "r-sn")
- (version "1.6-1")
+ (version "1.6-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "sn" version))
(sha256
(base32
- "0snri2k8qslb7478c5jz4a5xxmmb1ipmp8x1jizi8mhj2cjic1w0"))))
+ "179xb7yb8br99aa5awm2yxsy0v5w1kdhv6a7ifaliz2y64677m1g"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mnormt" ,r-mnormt)
@@ -5461,14 +5497,14 @@ is supported.")
(define-public r-lubridate
(package
(name "r-lubridate")
- (version "1.7.8")
+ (version "1.7.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "lubridate" version))
(sha256
(base32
- "0g2m9dyhgds4shdrk76w7rqdl9msam4rii2qrhz12gipzhi9k89x"))))
+ "0wnjzvfkrgp2hkr8g5r5vcgcxmsq8bhdmkzkk0m93wr3fgh5xyfb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-generics" ,r-generics)
diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm
index 6f6ea73ffc..47645a3e34 100644
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
-;;; Copyright © 2016, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be>
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
@@ -33,9 +33,9 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
- #:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system perl)
+ #:use-module (guix build-system qt)
#:use-module (guix build-system trivial)
#:use-module (guix build-system texlive)
#:use-module (guix utils)
@@ -6116,75 +6116,49 @@ and Karl Berry.")
(define-public lyx
(package
(name "lyx")
- (version "2.3.3")
+ (version "2.3.5.1")
(source (origin
(method url-fetch)
(uri (string-append "https://ftp.lyx.org/pub/lyx/stable/"
(version-major+minor version) ".x/"
- "lyx-" version ".tar.gz"))
+ "lyx-" version ".tar.xz"))
(sha256
(base32
- "0j3xincwmsscfgv13g3z6h4kx1qfzgg8x71fs393akcdxsh2g07c"))
+ "0mv32s26igm0pd8vs7d2mk1240dpr83y0a2wyh3xz6b67ph0w157"))
(modules '((guix build utils)))
(snippet
'(begin
(delete-file-recursively "3rdparty")
#t))))
- (build-system cmake-build-system)
+ (build-system qt-build-system)
(arguments
`(#:configure-flags `("-DLYX_USE_QT=QT5"
"-DLYX_EXTERNAL_BOOST=1"
"-DLYX_INSTALL=1"
"-DLYX_RELEASE=1"
+ "-DLYX_PROGRAM_SUFFIX=OFF"
,(string-append "-DLYX_INSTALL_PREFIX="
- (assoc-ref %outputs "out")
- ;; Exact name and level is necessary.
- "/lyx" ,(version-major+minor version)))
+ (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
- ;; See ;; https://www.lyx.org/trac/changeset/3a123b90af838b08680471d87170c38e56787df9/lyxgit
- (add-after 'unpack 'fix-compilation-with-boost-1.69
- (lambda _
- (substitute* "src/support/FileName.cpp"
- (("^template struct boost::detail::crc_table_t.*") ""))
- #t))
(add-after 'unpack 'patch-python
(lambda* (#:key inputs #:allow-other-keys)
- (substitute* '("src/support/os.cpp")
+ (substitute* '("lib/configure.py"
+ "src/support/ForkedCalls.cpp"
+ "src/support/Systemcall.cpp"
+ "src/support/os.cpp"
+ "src/support/filetools.cpp")
(("\"python ")
(string-append "\""
(assoc-ref inputs "python")
- "/bin/python ")))
+ "/bin/python3 ")))
#t))
- (add-after 'patch-python 'patch-desktop-file
- (lambda* (#:key outputs #:allow-other-keys)
- (substitute* "lib/lyx.desktop.in"
- (("Exec=")
- (string-append "Exec="
- (assoc-ref outputs "out")
- "/")))
- #t))
- (add-before 'check 'setenv-check
+ (add-after 'unpack 'add-missing-test-file
(lambda _
;; Create missing file that would cause tests to fail.
- (with-output-to-file (string-append "../lyx-"
- ,version
- "/src/tests/check_layout.cmake")
+ (with-output-to-file "src/tests/check_layout.cmake"
(const #t))
- (setenv (string-append "LYX_DIR_"
- (string-join
- (string-split
- ,(version-major+minor version) #\-)) "x")
- (string-append (getcwd) "/../lyx-" ,version "/lib"))
- #t))
- (add-after 'install 'install-symlinks
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (mkdir-p (string-append out "/bin"))
- (symlink (string-append "../lyx" ,(version-major+minor version)
- "/bin/lyx" ,(version-major+minor version))
- (string-append out "/bin/lyx" ,(version-major+minor version)))
- #t))))))
+ #t)))))
(inputs
`(("boost" ,boost)
("hunspell" ,hunspell) ; Note: Could also use aspell instead.
diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm
index 1740404709..2edc9820a8 100644
--- a/gnu/packages/text-editors.scm
+++ b/gnu/packages/text-editors.scm
@@ -743,14 +743,14 @@ and Octave. TeXmacs is completely extensible via Guile.")
(define-public scintilla
(package
(name "scintilla")
- (version "4.4.0")
+ (version "4.4.3")
(source
(origin
(method url-fetch)
(uri (let ((v (apply string-append (string-split version #\.))))
(string-append "https://www.scintilla.org/scintilla" v ".tgz")))
(sha256
- (base32 "10qnab10gfkzdfyqpmsl4c3mhh7533l4q6jrdfy5ssvj4da6hawd"))))
+ (base32 "080v9l7dn3qgkdg0nc0kwpj6warwpi904zjgz9kzg1l6pknxf21s"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags (list "GTK3=1" "CC=gcc" "-Cgtk")
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 60a31fb16c..99e1a8ccd1 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2015, 2016 Mathieu Lirzin <mthl@gnu.org>
;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014, 2016, 2019 Eric Bavier <bavier@member.fsf.org>
-;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015, 2018 Kyle Meyer <kyle@kyleam.com>
;;; Copyright © 2015, 2017, 2018, 2020 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
@@ -1569,18 +1569,14 @@ following features:
(define-public subversion
(package
(name "subversion")
- (version "1.10.6")
+ (version "1.14.0")
(source (origin
(method url-fetch)
- (uri
- (list
- (string-append "https://archive.apache.org/dist/subversion/"
- "subversion-" version ".tar.bz2")
- (string-append "https://www-eu.apache.org/dist/subversion/"
- "subversion-" version ".tar.bz2")))
+ (uri (string-append "mirror://apache/subversion/"
+ "subversion-" version ".tar.bz2"))
(sha256
(base32
- "19zc215mhpnm92mlyl5jbv57r5zqp6cavr3s2g9yglp6j4kfgj0q"))))
+ "00i1f88snlpcnsycpn6r315h6792l5nkr2p5k6kq6yprz4cf5a3b"))))
(build-system gnu-build-system)
(arguments
'(#:parallel-tests? #f ; TODO Seems to cause test failures on
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 4ce2c3098b..16136b7662 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -625,7 +625,11 @@ available.")
(delete-file-recursively "source/compat/getopt")
#t))))
(build-system cmake-build-system)
- (native-inputs `(("nasm" ,nasm)))
+ (native-inputs
+ ;; XXX: ASM optimization fails on i686-linux, see <https://bugs.gnu.org/41768>.
+ (if (string-prefix? "i686" (%current-system))
+ '()
+ `(("nasm" ,nasm))))
(arguments
`(#:tests? #f ; tests are skipped if cpu-optimized code isn't built
#:configure-flags
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 366c593865..26396fd59d 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -1588,7 +1588,7 @@ from streaming URLs. It is a command-line wrapper for the libquvi library.")
(source
(origin
(method url-fetch)
- (uri (string-append "https://archive.apache.org/dist/serf/serf-"
+ (uri (string-append "mirror://apache/dist/serf/serf-"
version ".tar.bz2"))
(sha256
(base32 "1k47gbgpp52049andr28y28nbwh9m36bbb0g8p0aka3pqlhjv72l"))))
@@ -7206,6 +7206,7 @@ derivation by David Revoy from the original MonsterID by Andreas Gohr.")
(package
(name "nghttp2")
(version "1.40.0")
+ (replacement nghttp2-1.41)
(source
(origin
(method url-fetch)
@@ -7285,6 +7286,20 @@ compressed JSON header blocks.
@end itemize\n")
(license license:expat)))
+(define-public nghttp2-1.41 ;fixes CVE-2020-11080
+ (package
+ (inherit nghttp2)
+ (version "1.41.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/nghttp2/nghttp2/"
+ "releases/download/v" version "/"
+ "nghttp2-" version ".tar.xz"))
+ (sha256
+ (base32
+ "1hk77vngjmvvzb5y1gi1aqwf6qywrc7yak08zvzb7x81qs6mphmb"))))))
+
(define-public hpcguix-web
(let ((commit "9de63562b06b4aef3a3afe5ecb18d3c91e57ee74")
(revision "5"))
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 06d28e30c1..615ac788ed 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -151,15 +151,14 @@ the leaves of a full binary tree.")
(define-public herbstluftwm
(package
(name "herbstluftwm")
- (version "0.8.2")
+ (version "0.8.3")
(source
(origin
(method url-fetch)
(uri (string-append "https://herbstluftwm.org/tarballs/herbstluftwm-"
version ".tar.gz"))
(sha256
- (base32
- "0wbl1s1gwdc61ll6qmkwb56swjxv99by1dhi080bdqn0w8p75804"))
+ (base32 "1qmb4pjf2f6g0dvcg11cw9njwmxblhqzd70ai8qnlgqw1iz3nkm1"))
(file-name (string-append "herbstluftwm-" version ".tar.gz"))))
(build-system cmake-build-system)
(inputs
@@ -1660,11 +1659,11 @@ productive, customizable lisp based systems.")
(delete 'cleanup)
(delete 'create-symlinks)))))))
-(define-public stumpish
- (let ((commit "920f8fc1488f7953f205e1dda4c2ecbbbda56d6")
+(define stumpwm-contrib
+ (let ((commit "920f8fc1488f7953f205e1dda4c2ecbbbda56d63")
(revision "2"))
(package
- (name "stumpish")
+ (name "stumpwm-contrib")
(version (git-version "0.0.1" revision commit)) ;no upstream release
(source
(origin
@@ -1672,154 +1671,189 @@ productive, customizable lisp based systems.")
(uri (git-reference
(url "https://github.com/stumpwm/stumpwm-contrib.git")
(commit commit)))
- (file-name (git-file-name name version))
(sha256
(base32 "0giac390bq95ag41xkxqp8jjrhfx1wpgglz7jg5rkm0wjhcwmyml"))))
+ (build-system asdf-build-system/sbcl)
(inputs
- `(("bash" ,bash)
- ("rlwrap" ,rlwrap)))
- (build-system trivial-build-system)
- (arguments
- '(#:modules ((guix build utils))
- #:builder
- (begin
- (use-modules (guix build utils))
- (copy-recursively (assoc-ref %build-inputs "source") ".")
- (chdir "util/stumpish")
- (substitute* "stumpish"
- (("rlwrap") (string-append (assoc-ref %build-inputs "rlwrap")
- "/bin/rlwrap"))
- (("/bin/sh") (string-append (assoc-ref %build-inputs "bash")
- "/bin/bash")))
- (install-file "stumpish" (string-append %output "/bin")))))
+ `(("stumpwm" ,stumpwm "lib")))
(home-page "https://github.com/stumpwm/stumpwm-contrib")
(synopsis "StumpWM interactive shell")
(description "This package provides a StumpWM interactive shell.")
(license (list license:gpl2+ license:gpl3+ license:bsd-2)))))
+(define-public stumpish
+ (package
+ (inherit stumpwm-contrib)
+ (name "stumpish")
+ (inputs
+ `(("bash" ,bash)
+ ("rlwrap" ,rlwrap)))
+ (build-system trivial-build-system)
+ (arguments
+ '(#:modules ((guix build utils))
+ #:builder
+ (begin
+ (use-modules (guix build utils))
+ (copy-recursively (assoc-ref %build-inputs "source") ".")
+ (chdir "util/stumpish")
+ (substitute* "stumpish"
+ (("rlwrap") (string-append (assoc-ref %build-inputs "rlwrap")
+ "/bin/rlwrap"))
+ (("/bin/sh") (string-append (assoc-ref %build-inputs "bash")
+ "/bin/bash")))
+ (install-file "stumpish" (string-append %output "/bin")))))
+ (home-page "https://github.com/stumpwm/stumpwm-contrib")
+ (synopsis "StumpWM interactive shell")
+ (description "This package provides a StumpWM interactive shell.")
+ (license (list license:gpl2+ license:gpl3+ license:bsd-2))))
+
(define-public sbcl-stumpwm+slynk
(deprecated-package "sbcl-stumpwm-with-slynk" stumpwm+slynk))
(define-public sbcl-stumpwm-ttf-fonts
- (let ((commit "920f8fc1488f7953f205e1dda4c2ecbbbda56d6")
- (revision "2"))
- (package
- (name "sbcl-ttf-fonts")
- (version (git-version "0.0.1" revision commit)) ;no upstream release
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/stumpwm/stumpwm-contrib.git")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0giac390bq95ag41xkxqp8jjrhfx1wpgglz7jg5rkm0wjhcwmyml"))))
- (inputs
- `(("stumpwm" ,stumpwm "lib")
- ("clx-truetype" ,sbcl-clx-truetype)))
- (build-system asdf-build-system/sbcl)
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'chdir
- (lambda _
- (chdir "util/ttf-fonts"))))))
- (home-page "https://github.com/stumpwm/stumpwm-contrib")
- (synopsis "Implementation of TTF font rendering for Lisp")
- (description "This package provides a Lisp implementation of TTF font
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-ttf-fonts")
+ (inputs
+ `(("stumpwm" ,stumpwm "lib")
+ ("clx-truetype" ,sbcl-clx-truetype)))
+ (arguments
+ '(#:asd-system-name "ttf-fonts"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "util/ttf-fonts") #t)))))
+ (home-page "https://github.com/stumpwm/stumpwm-contrib")
+ (synopsis "Implementation of TTF font rendering for Lisp")
+ (description "This package provides a Lisp implementation of TTF font
rendering.")
- (license (list license:gpl2+ license:gpl3+ license:bsd-2)))))
+ (license (list license:gpl2+ license:gpl3+ license:bsd-2))))
(define-public sbcl-stumpwm-pass
- (let ((commit "920f8fc1488f7953f205e1dda4c2ecbbbda56d6")
- (revision "2"))
- (package
- (name "sbcl-pass")
- (version (git-version "0.0.1" revision commit)) ;no upstream release
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/stumpwm/stumpwm-contrib.git")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0giac390bq95ag41xkxqp8jjrhfx1wpgglz7jg5rkm0wjhcwmyml"))))
- (inputs
- `(("stumpwm" ,stumpwm "lib")))
- (build-system asdf-build-system/sbcl)
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'chdir
- (lambda _
- (chdir "util/pass"))))))
- (home-page "https://github.com/stumpwm/stumpwm-contrib")
- (synopsis "Integrate @code{pass} wih StumpWM")
- (description "This package provides an interface which integrates
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-pass")
+ (arguments
+ '(#:asd-system-name "pass"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "util/pass") #t)))))
+ (home-page "https://github.com/stumpwm/stumpwm-contrib")
+ (synopsis "Integrate @code{pass} wih StumpWM")
+ (description "This package provides an interface which integrates
password-store into StumpWM.")
- (license (list license:gpl2+ license:gpl3+ license:bsd-2)))))
+ (license (list license:gpl2+ license:gpl3+ license:bsd-2))))
(define-public sbcl-stumpwm-globalwindows
- (let ((commit "920f8fc1488f7953f205e1dda4c2ecbbbda56d6")
- (revision "2"))
- (package
- (name "sbcl-globalwindows")
- (version (git-version "0.0.1" revision commit)) ;no upstream release
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/stumpwm/stumpwm-contrib.git")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0giac390bq95ag41xkxqp8jjrhfx1wpgglz7jg5rkm0wjhcwmyml"))))
- (inputs
- `(("stumpwm" ,stumpwm "lib")))
- (build-system asdf-build-system/sbcl)
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'chdir
- (lambda _
- (chdir "util/globalwindows"))))))
- (home-page "https://github.com/stumpwm/stumpwm-contrib")
- (synopsis "Manipulate all windows in the current X session")
- (description "This package provides a StumpWM module to manipulate all
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-globalwindows")
+ (arguments
+ '(#:asd-system-name "globalwindows"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "util/globalwindows") #t)))))
+ (home-page "https://github.com/stumpwm/stumpwm-contrib")
+ (synopsis "Manipulate all windows in the current X session")
+ (description "This package provides a StumpWM module to manipulate all
windows in the current X session.")
- (license (list license:gpl2+ license:gpl3+ license:bsd-2)))))
+ (license (list license:gpl2+ license:gpl3+ license:bsd-2))))
(define-public sbcl-stumpwm-swm-gaps
- (let ((commit "920f8fc1488f7953f205e1dda4c2ecbbbda56d6")
- (revision "2"))
- (package
- (name "sbcl-swm-gaps")
- (version (git-version "0.0.1" revision commit)) ;no upstream release
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/stumpwm/stumpwm-contrib.git")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0giac390bq95ag41xkxqp8jjrhfx1wpgglz7jg5rkm0wjhcwmyml"))))
- (inputs
- `(("stumpwm" ,stumpwm "lib")))
- (build-system asdf-build-system/sbcl)
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'chdir
- (lambda _
- (chdir "util/swm-gaps"))))))
- (home-page "https://github.com/stumpwm/stumpwm-contrib")
- (synopsis "Gaps between windows for StumpWM")
- (description "This package provides a StumpWM module which adds gaps
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-swm-gaps")
+ (arguments
+ '(#:asd-system-name "swm-gaps"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "util/swm-gaps") #t)))))
+ (home-page "https://github.com/stumpwm/stumpwm-contrib")
+ (synopsis "Gaps between windows for StumpWM")
+ (description "This package provides a StumpWM module which adds gaps
between windows.")
- (license (list license:gpl2+ license:gpl3+ license:bsd-2)))))
+ (license (list license:gpl2+ license:gpl3+ license:bsd-2))))
+
+(define-public sbcl-stumpwm-net
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-net")
+ (arguments
+ '(#:asd-system-name "net"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir (lambda _ (chdir "modeline/net") #t)))))
+ (home-page
+ "https://github.com/stumpwm/stumpwm-contrib/tree/master/modeline/net")
+ (synopsis "Modeline support for network connectivity")
+ (description "Modeline support for network connectivity.")
+ (supported-systems
+ (filter (lambda (a) (string-contains a "linux")) %supported-systems))
+ (license license:gpl3+)))
+
+(define-public sbcl-stumpwm-wifi
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-wifi")
+ (arguments
+ '(#:asd-system-name "wifi"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir (lambda _ (chdir "modeline/wifi") #t)))))
+ (home-page
+ "https://github.com/stumpwm/stumpwm-contrib/tree/master/modeline/wifi")
+ (synopsis "Modeline support for wifi connectivity")
+ (description "Modeline support for wifi connectivity.")
+ (supported-systems
+ (filter (lambda (a) (string-contains a "linux")) %supported-systems))
+ (license license:gpl3+)))
+
+(define-public sbcl-stumpwm-stumptray
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-stumptray")
+ (arguments
+ '(#:asd-system-name "stumptray"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir (lambda _ (chdir "modeline/stumptray") #t)))))
+ (inputs
+ `(("stumpwm" ,stumpwm "lib")
+ ("xembed" ,sbcl-clx-xembed)
+ ("alexandria" ,sbcl-alexandria)))
+ (home-page
+ "https://github.com/stumpwm/stumpwm-contrib/tree/master/modeline/stumptray")
+ (synopsis "Modeline support for stumptray connectivity")
+ (description "Modeline support for stumptray connectivity.")
+ (supported-systems
+ (filter (lambda (a) (string-contains a "linux")) %supported-systems))
+ (license license:gpl3+)))
+
+(define-public sbcl-stumpwm-kbd-layouts
+ (package
+ (inherit stumpwm-contrib)
+ (name "sbcl-stumpwm-kbd-layouts")
+ (arguments
+ '(#:asd-system-name "kbd-layouts"
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir (lambda _ (chdir "util/kbd-layouts") #t)))))
+ (home-page
+ "https://github.com/stumpwm/stumpwm-contrib/tree/master/util/kbd-layouts")
+ (synopsis "Keyboard layout switcher for StumpWM")
+ (description "Keyboard layout switcher for StumpWM")
+ (license license:gpl3+)))
(define-public lemonbar
(let ((commit "35183ab81d2128dbb7b6d8e119cc57846bcefdb4")
diff --git a/gnu/packages/xfce.scm b/gnu/packages/xfce.scm
index 7a6784b928..89a4206363 100644
--- a/gnu/packages/xfce.scm
+++ b/gnu/packages/xfce.scm
@@ -661,7 +661,7 @@ like appearance, display, keyboard and mouse settings.")
(define-public thunar
(package
(name "thunar")
- (version "1.8.14")
+ (version "1.8.15")
(source (origin
(method url-fetch)
(uri (string-append "https://archive.xfce.org/src/xfce/"
@@ -669,7 +669,7 @@ like appearance, display, keyboard and mouse settings.")
"thunar-" version ".tar.bz2"))
(sha256
(base32
- "17r1z8cyp709lz38w7b5vqi1zbgm2i3sqvdvicsbvma2b0gppica"))))
+ "14vw4yaf9fff24zmj4dp8r8hf8mb19hl4w4l0jc8c4qzy865c93n"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)
diff --git a/gnu/system.scm b/gnu/system.scm
index 21d0fbd190..d51691fe76 100644
--- a/gnu/system.scm
+++ b/gnu/system.scm
@@ -400,7 +400,7 @@ The object has its kernel-arguments extended in order to make it bootable."
(device (boot-parameters-store-device conf))
(device-mount-point (boot-parameters-store-mount-point conf))
(linux (and (not multiboot?) kernel))
- (linux-arguments (if (not multiboot?) '
+ (linux-arguments (if (not multiboot?)
(boot-parameters-kernel-arguments conf)
'()))
(initrd (boot-parameters-initrd conf))
@@ -847,7 +847,8 @@ fi\n")))
,@(if sudoers `(("sudoers" ,sudoers)) '())
,@(if hurd
`(("login" ,(file-append hurd "/etc/login"))
- ("motd" ,(file-append hurd "/etc/motd")))
+ ("motd" ,(file-append hurd "/etc/motd"))
+ ("ttys" ,(file-append hurd "/etc/ttys")))
'())))))
(define %root-account
diff --git a/gnu/system/vm.scm b/gnu/system/vm.scm
index 686e56348d..f2b6b71b4d 100644
--- a/gnu/system/vm.scm
+++ b/gnu/system/vm.scm
@@ -337,6 +337,7 @@ system that is passed to 'populate-root-file-system'."
(with-extensions gcrypt-sqlite3&co
(with-imported-modules `(,@(source-module-closure '((gnu build vm)
(gnu build bootloader)
+ (gnu build hurd-boot)
(guix store database)
(guix build utils))
#:select? not-config?)