diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a363298386..7dbebcf3da 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -575,6 +575,30 @@ BED, GFF/GTF, VCF.") whole-genome bisulfite sequencing (WGBS) reads from directional protocol.") (license license:asl2.0))) +(define-public bustools + (package + (name "bustools") + (version "0.43.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BUStools/bustools") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "068kjlc4d528269nl5mc3j8h2c95r1v545d3fi1iw1ckg8rba0hg")))) + (build-system cmake-build-system) + (arguments (list #:tests? #f)) ;no test target + (inputs (list zlib)) + (home-page "https://bustools.github.io") + (synopsis "Tools for working with BUS files") + (description "bustools is a program for manipulating BUS files for single +cell RNA-Seq datasets. It can be used to error correct barcodes, collapse +UMIs, produce gene count or transcript compatibility count matrices, and is useful +for many other tasks.") + (license license:bsd-2))) + (define-public cellsnp-lite ;; Last release is from November 2021 and does not contain fixes. (let ((commit "0885d746b0b1ea65c8ef92f8943ca7669ca9734a") |