diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4198acecda..40a264fd61 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1100,6 +1100,43 @@ high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib.") (license license:lgpl2.0+)))) +(define-public r-scenic + (let ((commit "cedf8490a634da550cea2c831544e5f7f14467d2") + (revision "1")) + (package + (name "r-scenic") + (version (git-version "1.3.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aertslab/SCENIC") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "17ai0q260hdqbvm1km1s5dw93pgz4f546ycfii57jyy9m9jka7r0")))) + (properties `((upstream-name . "SCENIC"))) + (build-system r-build-system) + (propagated-inputs (list r-aucell + r-data-table + r-dynamictreecut + r-genie3 + r-ggrepel + r-mixtools + r-nmf + r-rcistarget + r-rtsne)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/aertslab/SCENIC") + (synopsis + "SCENIC (Single Cell rEgulatory Network Inference and Clustering)") + (description "SCENIC (Single-cell regulatory network inference and +clustering) is an R package to infer Gene Regulatory Networks and cell types +from single-cell RNA-seq data.") + ;; As of commit cedf8490a634da550cea2c831544e5f7f14467d2 the license is + ;; GPLv3. + (license license:gpl3)))) + (define-public r-singlet (let ((commit "765a6c45081807a1522f0e8983e2417822a36f36") (revision "1")) |