diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
2 files changed, 32 insertions, 32 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 44864c2c6d..1bb1871fd0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -129,6 +129,38 @@ melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-bsgenome-dmelanogaster-ucsc-dm3 + (package + (name "r-bsgenome-dmelanogaster-ucsc-dm3") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Dmelanogaster.UCSC.dm3_" + version ".tar.gz")) + (sha256 + (base32 + "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8")))) + (properties + `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/") + (synopsis "Full genome sequences for Fly") + (description + "This package provides full genome sequences for Drosophila +melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in +Biostrings objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-dmelanogaster-ucsc-dm3-masked (package (name "r-bsgenome-dmelanogaster-ucsc-dm3-masked") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7243ee1729..d45dedb6c9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) based on the knownGene track.") (license license:artistic2.0))) -(define-public r-bsgenome-dmelanogaster-ucsc-dm3 - (package - (name "r-bsgenome-dmelanogaster-ucsc-dm3") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Dmelanogaster.UCSC.dm3_" - version ".tar.gz")) - (sha256 - (base32 - "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8")))) - (properties - `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/") - (synopsis "Full genome sequences for Fly") - (description - "This package provides full genome sequences for Drosophila -melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in -Biostrings objects.") - (license license:artistic2.0))) - (define-public r-motifrg (package (name "r-motifrg") |