diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 202 |
1 files changed, 194 insertions, 8 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 9a4cdd219d..b09076106f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -15,6 +15,7 @@ ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; Copyright © 2021 Lars-Dominik Braun <lars@6xq.net> +;;; Copyright © 2021 Frank Pursel <frank.pursel@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -68,6 +69,7 @@ #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) + #:use-module (gnu packages ncurses) #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) @@ -75,6 +77,7 @@ #:use-module (gnu packages python-science) #:use-module (gnu packages python-xyz) #:use-module (gnu packages readline) + #:use-module (gnu packages shells) #:use-module (gnu packages sphinx) #:use-module (gnu packages ssh) #:use-module (gnu packages tcl) @@ -3228,7 +3231,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/1.10.20/js/dataTables.semanticui.js" "1477f49xyxs4phias789mbspv23w8alxchhl5b5iy0aw6vd35c43" "datatables") - + ("https://cdn.datatables.net/autofill/2.3.4/js/dataTables.autoFill.js" "04i6n7r3512gzfihl5wnhrvm0klnjp41g1z6cny3j803hvmnp8zk" "datatables-extensions/AutoFill") @@ -3307,7 +3310,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/colreorder/1.5.2/js/colReorder.jqueryui.js" "1rd8hijz3prg2y36fvqczrpdzixibjy2dxgs2fmgr8wrm8k01rrm" "datatables-extensions/ColReorder") - + ("https://cdn.datatables.net/fixedcolumns/3.3.0/js/dataTables.fixedColumns.js" "0vsqk2fv59n351bdfcbvhmvpq38qwf41j1cn810xz1l1i07cg4hg" "datatables-extensions/FixedColumns") @@ -3326,7 +3329,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/fixedcolumns/3.3.0/js/fixedColumns.semanticui.js" "1kqsap9y0d25a7m5zjakipifl5qi2qr72kfj4ap3zxavd8md2wyn" "datatables-extensions/FixedColumns") - + ("https://cdn.datatables.net/fixedheader/3.1.6/js/dataTables.fixedHeader.js" "1ml5ilnm8nirr6rsgmzn75l1k0hcjz3sqk6h1y1gy8cpwpklvqri" "datatables-extensions/FixedHeader") @@ -3345,7 +3348,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/fixedheader/3.1.6/js/fixedHeader.semanticui.js" "1v0i6dc68h8l8673fb5970igzkl7as36riv504iyg82glfi7n877" "datatables-extensions/FixedHeader") - + ("https://cdn.datatables.net/keytable/2.5.1/js/dataTables.keyTable.js" "16iib2icxsjh93x5hd42gpsl7bzpcsqb7zjgj0m1s02ls45bdlv5" "datatables-extensions/KeyTable") @@ -3383,7 +3386,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/responsive/2.2.3/js/responsive.bootstrap4.js" "1zjh15p7n1038sggaxv1xvcwbkhw2nk1ndx745s6cxiqb69y3i0h" "datatables-extensions/Responsive") - + ("https://cdn.datatables.net/rowgroup/1.1.1/js/dataTables.rowGroup.js" "0s4q7ir2d6q36g29nn9mqk7vrqrdig2mm5zbcv0sn2lixqi29pkj" "datatables-extensions/RowGroup") @@ -3421,7 +3424,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/rowreorder/1.2.6/js/rowReorder.semanticui.js" "1zjrx2rlgw3qannsqa88pcp3i4pc87pwv7rmgfw1dar8namkr9kk" "datatables-extensions/RowReorder") - + ("https://cdn.datatables.net/scroller/2.0.1/js/dataTables.scroller.js" "0zfjjdvwwlsnps24i9l4c97hmway2qs6addks1is5bxl4k1r6d16" "datatables-extensions/Scroller") @@ -3440,7 +3443,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/scroller/2.0.1/js/scroller.semanticui.js" "1dfbblbzbryjgiv31qfdjnijz19lmyijg12win3y8gsgfd4fp9zz" "datatables-extensions/Scroller") - + ("https://cdn.datatables.net/searchbuilder/1.0.0/js/dataTables.searchBuilder.js" "0n5g0j0yfzqvdpsmwb27bj1rd8zx864fsx2k7b2kpv6mqqavzpqc" "datatables-extensions/SearchBuilder") @@ -3475,7 +3478,7 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/searchpanes/1.1.1/js/searchPanes.semanticui.js" "1781d0xmx7xz0jly0wsw2zbrdmfc1crahmcdbsfbj5s66kdsnd7c" "datatables-extensions/SearchPanes") - + ("https://cdn.datatables.net/select/1.3.1/js/dataTables.select.js" "0a7bkbz1cizhiq4h417b4rcdr7998pn8q4dlyzx8449xdp0h0n0v" "datatables-extensions/Select") @@ -6690,3 +6693,186 @@ original Datasaurus is detailed in \"Same Stats, Different Graphs: Generating Datasets with Varied Appearance and Identical Statistics through Simulated Annealing\" @url{doi:10.1145/3025453.3025912}.") (license license:expat))) + +(define-public r-lmom + (package + (name "r-lmom") + (version "2.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "lmom" version)) + (sha256 + (base32 "1lnj41gynaar5isyijg5nbll64qdxa12dnqvz7lxhaclqcjskqna")))) + (properties `((upstream-name . "lmom"))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/package=lmom") + (synopsis "L-Moments for R") + (description + "This package provides functions related to L-moments: computation +of L-moments and trimmed L-moments of distributions and data samples; +parameter estimation; L-moment ratio diagram; plot vs. quantiles of an +extreme-value distribution.") + (license license:cpl1.0))) + +(define-public r-gld + (package + (name "r-gld") + (version "2.6.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "gld" version)) + (sha256 + (base32 "1wrw7i5bq7rb2ahadm57y9fmr697r7lp9ln7ajcd592b0nn60n4i")))) + (properties `((upstream-name . "gld"))) + (build-system r-build-system) + (propagated-inputs `(("r-e1071" ,r-e1071) ("r-lmom" ,r-lmom))) + (home-page + "https://cran.r-project.org/package=gld") + (synopsis + "Estimation and Use of the Generalised (Tukey) Lambda Distribution") + (description + "The generalised lambda distribution, or Tukey lambda distribution, +provides a wide variety of shapes with one functional form. This package +provides random numbers, quantiles, probabilities, densities and +density quantiles for four different types of the distribution, the FKML +(Freimer et al 1988), RS (Ramberg and Schmeiser 1974), GPD (van Staden +and Loots 2009) and FM5 - see documentation for details. It provides the +density function, distribution function, and Quantile-Quantile plots. +It implements a variety of estimation methods for the distribution, +including diagnostic plots. Estimation methods include the starship (all +4 types), method of L-Moments for the GPD and FKML types, and a number +of methods for only the FKML type. These include maximum likelihood, +maximum product of spacings, Titterington's method, Moments, Trimmed +L-Moments and Distributional Least Absolutes.") + (license license:gpl2+))) + +(define-public r-exact + (package + (name "r-exact") + (version "3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "Exact" version)) + (sha256 + (base32 "0acm01njg3arlzwknv5v1sdsz5ab0bdh04sn1bmf91hcg3li8qd7")))) + (properties `((upstream-name . "Exact"))) + (build-system r-build-system) + (propagated-inputs `(("r-rootsolve" ,r-rootsolve))) + (home-page "https://cran.r-project.org/package=Exact") + (synopsis "Unconditional Exact Test") + (description + "Performs unconditional exact tests and power calculations for 2x2 +contingency tables. For comparing two independent proportions, performs +@url{doi:10.1038/156177a0, Barnard's test (1945)} using the original CSM +test (@url{doi:10.1093/biomet/34.1-2.123, Barnard (1947)}), using Fisher's +p-value referred to as @url{doi:10.1111/j.1467-9574.1970.tb00104.x, +Boschloo's test (1970)}, or using a Z-statistic (@url{doi:10.2307/2981892, +Suissa and Shuster (1985)}). For comparing two binary proportions, +performs unconditional exact test using McNemar's Z-statistic +(@url{doi:10.1191/0962280203sm312ra, Berger and Sidik (2003)}), using +McNemar's Z-statistic with continuity correction, or using CSM test. +Calculates confidence intervals for the difference in proportion.") + (license license:gpl2))) + +(define-public r-desctools + (package + (name "r-desctools") + (version "0.99.43") + (source + (origin + (method url-fetch) + (uri (cran-uri "DescTools" version)) + (sha256 + (base32 "1zx4wwry7pph21q37r0r1vgx616pki232ych2wl9z2s2fmclwg4c")))) + (properties `((upstream-name . "DescTools"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-boot" ,r-boot) + ("r-data-table" ,r-data-table) + ("r-exact" ,r-exact) + ("r-expm" ,r-expm) + ("r-gld" ,r-gld) + ("r-mass" ,r-mass) + ("r-mvtnorm" ,r-mvtnorm) + ("r-rcpp" ,r-rcpp) + ("r-rstudioapi" ,r-rstudioapi))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://andrisignorell.github.io/DescTools/") + (synopsis "Tools for Descriptive Statistics") + (description + "This package provides a collection of miscellaneous basic statistic +functions and convenience wrappers for efficiently describing data. +The author's intention was to create a toolbox, which facilitates the +(notoriously time consuming) first descriptive tasks in data analysis, +consisting of calculating descriptive statistics, drawing graphical +summaries and reporting the results. The package contains furthermore +functions to produce documents using MS Word (or PowerPoint) and functions +to import data from Excel. Many of the included functions can be found +scattered in other packages and other sources written partly by Titans +of R. The reason for collecting them here, was primarily to have them +consolidated in ONE instead of dozens of packages (which themselves might +depend on other packages which are not needed at all), and to provide a +common and consistent interface as far as function and arguments naming, +NA handling, recycling rules etc. are concerned. Google style guides +were used as naming rules (in absence of convincing alternatives). +The BigCamelCase style was consequently applied to functions borrowed +from contributed R packages as well.") + (license license:gpl2+))) + +(define-public xlispstat + (let ((commit "f1bea6053df658ee48612bf1f63c35de99e2c649") + (revision "0")) + (package + (name "xlispstat") + (version (git-version "3.52.23" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jhbadger/xlispstat.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1p0cmgy19kbkxia139cb5w9dnkp2cdqp5n3baag6cq3prn3n71mf")))) + (build-system gnu-build-system) + (arguments + `(#:parallel-build? #f ; Parallel builds are not supported + #:configure-flags (list "--with-gcc") + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-output-to-file "exit.lsp" + (lambda () (display "(exit)"))) + (invoke "./xlisp" "tests/test" "exit"))))))) + (inputs `(("tcsh" ,tcsh) + ("libx11" ,libx11) + ("libxmu" ,libxmu) + ("libxext" ,libxext) + ("libxpm" ,libxpm) + ("libxaw" ,libxaw) + ("ncurses" ,ncurses) + ("gnuplot" ,gnuplot))) + (native-inputs `(("pkg-config" ,pkg-config))) + (synopsis "Statistical analysis environment with interactive graphics") + (description "XLISP-STAT is a statistical environment based on a Lisp +dialect called XLISP. To facilitate statistical computations, standard +functions for addition, logarithms, etc., have been modified to operate on +lists and arrays of numbers, and a number of basic statistical functions have +been added. Many of these functions have been written in Lisp, and additional +functions can be added easily by a user. Several basic forms of plots, +including histograms, scatterplots, rotatable plots and scatterplot matrices +are provided. These plots support various forms of interactive highlighting +operations and can be linked so points highlighted in one plot will be +highlighted in all linked plots. Interactions with the plots are controlled +by the mouse, menus and dialog boxes. An object-oriented programming system +is used to allow menus, dialogs, and the response to mouse actions to be + customized.") + (home-page "http://homepage.divms.uiowa.edu/~luke/xls/xlsinfo/") + (license license:expat)))) |