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-rw-r--r--gnu/packages/statistics.scm150
1 files changed, 148 insertions, 2 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c84845dd29..45e50b651c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -165,7 +165,9 @@ be output in text, PostScript, PDF or HTML.")
("which" ,which) ; for tests/Examples/base-Ex.R
("xz" ,xz)))
(inputs
- `(("cairo" ,cairo)
+ `(;; We need not only cairo here, but pango to ensure that tests for the
+ ;; "cairo" bitmapType plotting backend succeed.
+ ("pango" ,pango)
("curl" ,curl)
("tzdata" ,tzdata)
("gfortran" ,gfortran)
@@ -596,7 +598,8 @@ legends.")
("r-plyr" ,r-plyr)
("r-proto" ,r-proto)
("r-reshape2" ,r-reshape2)
- ("r-scales" ,r-scales)))
+ ("r-scales" ,r-scales)
+ ("r-svglite" ,r-svglite)))
(home-page "http://ggplot2.org")
(synopsis "An implementation of the grammar of graphics")
(description
@@ -608,6 +611,55 @@ multidimensional conditioning system and a consistent interface to map data to
aesthetic attributes.")
(license license:gpl2+)))
+(define-public r-gdtools
+ (package
+ (name "r-gdtools")
+ (version "0.0.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gdtools" version))
+ (sha256
+ (base32
+ "1bmnf9d677f2jy8jnb9ymjz1qzm4yrd0qp6k5qrrly06jfffyx7g"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-rcpp" ,r-rcpp)
+ ("pkg-config" ,pkg-config)))
+ (inputs
+ `(("cairo" ,cairo)))
+ (home-page "http://cran.r-project.org/web/packages/gdtools")
+ (synopsis "Utilities for graphical rendering")
+ (description
+ "The @code{gdtools} package provides functionalities to get font metrics
+and to generate base64 encoded string from raster matrix.")
+ (license license:gpl3)))
+
+(define-public r-svglite
+ (package
+ (name "r-svglite")
+ (version "1.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "svglite" version))
+ (sha256
+ (base32
+ "11ryicjglfi6jvkk4jgg5kra42qbs5z2zid7jjhlslpjcljfwc70"))))
+ (build-system r-build-system)
+ (native-inputs `(("r-rcpp" ,r-rcpp)))
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-gdtools" ,r-gdtools)))
+ (home-page "https://github.com/hadley/svglite")
+ (synopsis "SVG graphics device")
+ (description
+ "@code{svglite} is a graphics device that produces clean
+@dfn{SVG} (Scalable Vector Graphics) output, suitable for use on the web, or
+hand editing. Compared to the built-in @code{svg()}, @code{svglite} is
+considerably faster, produces smaller files, and leaves text as is.")
+ (license license:gpl2+)))
+
(define-public r-assertthat
(package
(name "r-assertthat")
@@ -1353,6 +1405,25 @@ diagnostic tests of convergence to the equilibrium distribution of the Markov
chain.")
(license license:gpl2+)))
+(define-public r-ade4
+ (package
+ (name "r-ade4")
+ (version "1.7-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ade4" version))
+ (sha256
+ (base32
+ "17sbicash7z4b63dlrbaf8xx2pbwh62vykzvhdjs43h8jkl881y7"))))
+ (build-system r-build-system)
+ (home-page "http://pbil.univ-lyon1.fr/ADE-4")
+ (synopsis "Multivariate data analysis and graphical display")
+ (description
+ "The ade4 package contains data analysis functions to analyze ecological
+and environmental data in the framework of Euclidean exploratory methods.")
+ (license license:gpl2+)))
+
(define-public r-xml2
(package
(name "r-xml2")
@@ -1377,6 +1448,32 @@ chain.")
files in R. It is built on top of the libxml2 C library.")
(license license:gpl2+)))
+(define-public r-multitaper
+ (package
+ (name "r-multitaper")
+ (version "1.0-11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "multitaper" version))
+ (sha256
+ (base32
+ "1s0lmjzpyd7zmc2p1ywv5fm7qkq357p70b76gw9wjlms6d81j1n4"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "http://github.com/wesleyburr/multitaper/")
+ (synopsis "Multitaper spectral analysis tools")
+ (description
+ "This package implements multitaper spectral estimation
+techniques using prolate spheroidal sequences (Slepians) and sine
+tapers for time series analysis. It includes an adaptive weighted
+multitaper spectral estimate, a coherence estimate, Thomson's Harmonic
+F-test, and complex demodulation. The Slepians sequences are
+generated efficiently using a tridiagonal matrix solution, and
+jackknifed confidence intervals are available for most estimates.")
+ (license license:gpl2+)))
+
(define-public r-rversions
(package
(name "r-rversions")
@@ -2170,6 +2267,29 @@ parallel.")
using the parallel package.")
(license license:gpl2+)))
+(define-public r-domc
+ (package
+ (name "r-domc")
+ (version "1.3.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "doMC" version))
+ (sha256
+ (base32
+ "0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn"))))
+ (properties `((upstream-name . "doMC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-foreach" ,r-foreach)
+ ("r-iterators" ,r-iterators)))
+ (home-page "http://cran.r-project.org/web/packages/doMC")
+ (synopsis "Foreach parallel adaptor for the 'parallel' package")
+ (description
+ "This package provides a parallel backend for the @code{%dopar%} function
+using the multicore functionality of the parallel package.")
+ (license license:gpl2+)))
+
(define-public r-dt
(package
(name "r-dt")
@@ -2242,6 +2362,32 @@ singular and eigenvalue decompositions, as well as for principal component
analysis of large sparse or dense matrices.")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-glmnet
+ (package
+ (name "r-glmnet")
+ (version "2.0-5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "glmnet" version))
+ (sha256
+ (base32
+ "1cbpzmbv837fvq88rgn6mgzgr9f1wqp9fg8gh2kkmngvr1957a9c"))))
+ (build-system r-build-system)
+ (inputs
+ `(("gfortran" ,gfortran)))
+ (propagated-inputs
+ `(("r-foreach" ,r-foreach)))
+ (home-page "http://www.jstatsoft.org/v33/i01")
+ (synopsis "Lasso and elastic-net regularized generalized linear models")
+ (description
+ "The glmnet package provides efficient procedures for fitting the entire
+lasso or elastic-net regularization path for linear and Poisson regression, as
+well as logistic, multinomial, Cox, multiple-response Gaussian and grouped
+multinomial models. The algorithm uses cyclical coordinate descent in a
+path-wise fashion.")
+ (license license:gpl2+)))
+
(define-public r-pkgmaker
(package
(name "r-pkgmaker")