diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 93 |
1 files changed, 57 insertions, 36 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 952335be54..ba8ff10059 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -115,7 +115,7 @@ (define-public pspp (package (name "pspp") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) @@ -123,7 +123,7 @@ version ".tar.gz")) (sha256 (base32 - "1pyqlab9kw65wxc8pilcwb64l18w37xxdg3r6n287c7mda4cpxm8")))) + "002c08rxym056mn7a73jwjmcazqd4gh5j1cyml603y4ckvqb1nwf")))) (build-system gnu-build-system) (arguments (list #:phases @@ -180,9 +180,13 @@ be output in text, PostScript, PDF or HTML.") (base32 "0aa2w4g5057vn1qjp954s2kwxfmy1h7p5yn56fyi7sz9nmaq69gr")))) (build-system gnu-build-system) + (arguments + (list #:configure-flags + #~(list "--with-lapack=-lopenblas" + "--with-blas=-lopenblas"))) (home-page "https://mcmc-jags.sourceforge.net/") (native-inputs - (list gfortran lapack)) + (list gfortran openblas)) (synopsis "Gibbs sampler") (description "JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) @@ -600,14 +604,14 @@ Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".") (define-public r-codetools (package (name "r-codetools") - (version "0.2-19") + (version "0.2-20") (source (origin (method url-fetch) (uri (cran-uri "codetools" version)) (sha256 (base32 - "1ardg28x2cvilkgsj6bdvvp5snsy3rj7jbz9bpcdlcvzr1kybdy4")))) + "0qx8zrlickl45wzzbydsbx5f1vmzhn71x7amzpfj71qpxisz7riv")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/codetools") (synopsis "Code analysis tools for R") @@ -663,13 +667,13 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (define-public r-lattice (package (name "r-lattice") - (version "0.22-5") + (version "0.22-6") (source (origin (method url-fetch) (uri (cran-uri "lattice" version)) (sha256 (base32 - "1wd5dlxi0hd4l08g999y3xnxnaq06gwvflcqr9ym0cx131gbw7xs")))) + "1xq09lfjlca6c7mn412hjjav0q66p7wmjrwx5f3ygv3jwh8p4dsb")))) (build-system r-build-system) (home-page "https://lattice.r-forge.r-project.org/") (synopsis "High-level data visualization system") @@ -1064,13 +1068,13 @@ see package vignette. To quote Rene Magritte, \"Ceci n'est pas un pipe.\"") (define-public r-munsell (package (name "r-munsell") - (version "0.5.0") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "munsell" version)) (sha256 - (base32 "16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh")))) + (base32 "19i9jjawlqciw4n4h99a4sm0lbc77la3pqyzjvnwsrh7qjdgv8h3")))) (build-system r-build-system) (propagated-inputs (list r-colorspace)) @@ -1620,13 +1624,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.45") + (version "1.46") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "1yw4fnzm8lvh6kpcdlvr1fahz7421h5mmaris58zlgn57fjxwbpf")))) + "0ng8kw79csvcg46lsm3yf147jh6rf91jbj8qlryaihd8jcyc6lcg")))) (build-system r-build-system) (propagated-inputs (list r-evaluate r-highr r-xfun r-yaml)) @@ -1908,14 +1912,14 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "2.4.0") + (version "2.5.0") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "1rzi8112fi0bx2fj0j5ak9bfgqgjk5k5dv66qrb890gsf5bz6m4i")))) + "1zxw4ignzm2fzixsf6n80f44b9q7434vamy2xj4v31wlx3dmnixv")))) (build-system r-build-system) (propagated-inputs (list r-blob @@ -2033,13 +2037,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.15.2") + (version "1.15.4") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "04pfcm3pyl997rpyj5zdmbhi4ndaai81vfgv4whjp8rhqzjk7i6j")))) + "0lyb82kl2bn70l9ag5xdr8q7rh4majbimygaynmfqnbdjkznb05b")))) (properties `((upstream-name . "data.table"))) (build-system r-build-system) (inputs @@ -2176,7 +2180,7 @@ machine learning, computer vision, and high-dimensional statistics.") (define-public python-arviz (package (name "python-arviz") - (version "0.17.0") + (version "0.17.1") (source (origin (method git-fetch) ; PyPI misses some test files (uri (git-reference @@ -2185,7 +2189,7 @@ machine learning, computer vision, and high-dimensional statistics.") (file-name (git-file-name name version)) (sha256 (base32 - "0rmv7nniciq2jjnmk3qslc777wm8mjp7vsbk5dqx87a94dp7198f")))) + "1rpm2a9swzhnqn84dfsbc8kvz6qnn8w2icr3p08gwax9h9pg4ksp")))) (build-system pyproject-build-system) (arguments ;; FIXME: matplotlib tests fail because of the "--save" test flag. @@ -2224,7 +2228,7 @@ comparison and diagnostics.") (define-public python-pymc (package (name "python-pymc") - (version "5.10.3") + (version "5.11.0") (source (origin (method git-fetch) ; no tests in PyPI (uri (git-reference @@ -2233,7 +2237,7 @@ comparison and diagnostics.") (file-name (git-file-name name version)) (sha256 (base32 - "0ydngbki4xb0i4j0nayzqqrvwlxp30fp56kiwm95n2i7iwgmki02")))) + "0x94qzq3z02fxlliz1xfdpb2pbn7nhp4skzcxz6qdavbj9xqcxys")))) (build-system pyproject-build-system) (arguments (list #:tests? #f ; tests are too computationally intensive @@ -2347,13 +2351,13 @@ building design matrices.") (define-public python-mapie (package (name "python-mapie") - (version "0.8.2") + (version "0.8.3") (source (origin (method url-fetch) (uri (pypi-uri "MAPIE" version)) (sha256 (base32 - "185nnsl6ag2xzkfxpmc86d9dd8wf2v87b2psan10sma399fbqd0x")))) + "13kgyqk1hp603n9zym835kp1pqs83k0j7ymayw4fk0zx4z1nmvdx")))) (build-system pyproject-build-system) (native-inputs (list python-pandas python-pytest)) (propagated-inputs (list python-numpy python-scikit-learn)) @@ -2437,7 +2441,8 @@ sampler for Markov chain Monte Carlo (MCMC).") python-pytest-randomly python-pytest-xdist python-setuptools-scm)) - (home-page "https://statsmodels.sourceforge.net/") + (home-page + (string-append "https://www.statsmodels.org/v" version "/")) (synopsis "Statistical modeling and econometrics in Python") (description "Statsmodels is a Python package that provides a complement to scipy for @@ -2981,13 +2986,13 @@ pure C implementation of the Git core methods.") (define-public r-rstudioapi (package (name "r-rstudioapi") - (version "0.15.0") + (version "0.16.0") (source (origin (method url-fetch) (uri (cran-uri "rstudioapi" version)) (sha256 (base32 - "1kvc870gx02cpb800zjvdrhfhyfpzgkydgw2g7kxdlrpr8fwhnwk")))) + "1rjgxn7p15a69vfkhwrxywag6w9k4ccnklpvhr1sb1wy35ksizvl")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -3179,13 +3184,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.12.8.1.0") + (version "0.12.8.2.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0ax4812dm33c67ckd902qabis3dgqmpkchk4s30bshnfv4fxx1z2")))) + "0w1c0mpqqf6m2gk4221kjxx299bs4qpxn867fgnkpg69kj3mh8gd")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -3392,13 +3397,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.3.5") + (version "2.3.6") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "1wvfadwcr8iv0z6pddfpvl60dq4p8l68v16p9daa002srgzpwlw1")))) + "1wpqr71wckxrh8ih5f01wkqqqnq5s3zaj0m8b40g76pliyjvgcgv")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -3829,13 +3834,13 @@ using the multicore functionality of the parallel package.") "datatables-extensions/Buttons")))) (package (name "r-dt") - (version "0.32") + (version "0.33") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "0nvj2bc441b9h13085fa7q281f86lgx4k0d8lr64xgdpbmbvkl21")) + "1f17gdqjk1aj7vwjvv3363k8lnsvc6ssh4s3gy1prnz33kdxlig1")) (modules '((guix build utils) (ice-9 match))) (snippet @@ -6055,14 +6060,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-35.1") + (version "1.1-35.2") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0nzv1a22pfsf2ryw91h16ic4cb8y8g6wh0gx3msr7gv8dwwi3974")))) + "0nvvkvpasna9hy0y3fxd4fy2b2gxzgdga9kmxvli59dlkdy28ipc")))) (build-system r-build-system) (propagated-inputs (list r-boot @@ -6883,19 +6888,35 @@ Java package that provides routines for various statistical distributions.") (((string-append "^\\(ert-deftest " test-name ".*") all) (string-append all "(skip-unless nil)\n")) - ...))))) + ...)))) + (disable-etests ;different test syntax + (syntax-rules () + ((_ file ()) + (syntax-error "test names list must not be empty")) + ((_ file (test-name ...)) + (emacs-batch-edit-file file + '(progn + (mapc (lambda (test) + (goto-char (point-min)) + (search-forward + (format "etest-deftest %s " test)) + (beginning-of-line) + (kill-sexp)) + (list test-name ...)) + (basic-save-buffer))))))) (disable-tests (list "test/ess-test-inf.el" "test/ess-test-r.el") ("ess--derive-connection-path" "ess-eval-line-test" "ess-eval-region-test" "ess-mock-remote-process" - "ess-r-eval-sink-freeze-test" - "ess-r-eval-ns-env-roxy-tracebug-test" "ess-r-load-ESSR-github-fetch-no" "ess-r-load-ESSR-github-fetch-yes" "ess-set-working-directory-test" - "ess-test-r-startup-directory"))))) + "ess-test-r-startup-directory")) + (disable-etests "test/ess-test-r-eval.el" + ("ess-r-eval-ns-env-roxy-tracebug-test" + "ess-r-eval-sink-freeze-test"))))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "make" "test")))))))) |