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-rw-r--r--gnu/packages/python-science.scm23
1 files changed, 14 insertions, 9 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 63df0ae5e4..c5e9a41ce2 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1991,7 +1991,7 @@ of Pandas
(define-public python-pingouin
(package
(name "python-pingouin")
- (version "0.5.2")
+ (version "0.5.4")
(source
;; The PyPI tarball does not contain the tests.
(origin
@@ -2002,11 +2002,15 @@ of Pandas
(file-name (git-file-name name version))
(sha256
(base32
- "0czy7cpn6xx9fs6wbz6rq2lpkb1a89bzxj1anf2f9in1m5qyrh83"))))
- (build-system python-build-system)
+ "1j3qkgvyc31604ddl952h4hwza7schg8kwkycmxvpvx7xjj7nn68"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
+ (list
+ #:test-flags
+ ;; This one fails due to minor differences in accuracy
+ '(list "-k" "not test_logistic_regression")
+ #:phases
+ '(modify-phases %standard-phases
(add-after 'unpack 'loosen-requirements
(lambda _
(substitute* '("requirements.txt" "setup.py")
@@ -2024,10 +2028,11 @@ of Pandas
(substitute* "pingouin/__init__.py"
(("^from outdated[^\n]*") "")
(("^warn_if_outdated[^\n]*") ""))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest")))))))
+ (add-after 'unpack 'sklearn-compatibility
+ (lambda _
+ (substitute* "pingouin/regression.py"
+ (("kwargs\\[\"penalty\"\\] = \"none\"")
+ "kwargs[\"penalty\"] = None")))))))
(native-inputs
(list python-pytest python-pytest-cov))
(propagated-inputs