diff options
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 54 |
1 files changed, 31 insertions, 23 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index b6a116f16b..862e101f6a 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -6,7 +6,7 @@ ;;; Copyright © 2016, 2022-2024 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016-2020, 2022 Marius Bakke <marius@gnu.org> ;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2019, 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2019, 2021, 2022, 2023, 2024 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2020, 2021, 2022, 2023, 2024 Vinicius Monego <monego@posteo.net> @@ -23,6 +23,7 @@ ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; Copyright © 2022 jgart <jgart@dismail.de> ;;; Copyright © 2023, 2024 Troy Figiel <troy@troyfigiel.com> +;;; Copyright © 2024 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1435,31 +1436,15 @@ for handling arrays and scalars with units,respectively") (define-public python-upsetplot (package (name "python-upsetplot") - (version "0.6.0") + (version "0.9.0") (source (origin (method url-fetch) (uri (pypi-uri "UpSetPlot" version)) (sha256 (base32 - "11zrykwnb00w5spx4mnsnm0f9gwrphdczainpmwkyyi50vipaa2l")) - (modules '((guix build utils))) - (snippet - ;; Patch for compatibility with newer setuptools: - ;; https://github.com/jnothman/UpSetPlot/pull/178 - '(substitute* "upsetplot/data.py" - (("import distutils") - "from distutils.version import LooseVersion") - (("if distutils\\.version\\.LooseVersion") - "if LooseVersion"))))) - (build-system python-build-system) - (arguments - '(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" "-v" "--doctest-modules"))))))) + "14l5gcj88cclkj1mf74bcy1pxq1hgsiy27fa3vxrsk32ik1nmdwm")))) + (build-system pyproject-build-system) (propagated-inputs (list python-matplotlib python-pandas)) (native-inputs @@ -1814,7 +1799,10 @@ Mathematics (GLM) library to Python.") ;; These tests are rather flaky " and not test_quiet_quit_when_cluster_leaves" " and not multiple_clients_restart" - " and not test_steal_twice")) + " and not test_steal_twice" + " and not test_task_groups_update_start_stop" + " and not test_web_preload" + " and not test_web_preload_worker")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'versioneer @@ -1889,10 +1877,10 @@ parentdir_prefix = distributed- python-urllib3 python-zict)) (native-inputs - (list python-importlib-metadata + (list python-flaky + python-importlib-metadata python-pytest python-pytest-timeout - python-flaky python-versioneer)) (home-page "https://distributed.dask.org") (synopsis "Distributed scheduler for Dask") @@ -2299,6 +2287,26 @@ Python, from the Sheffield machine learning group. GPy implements a range of machine learning algorithms based on GPs.") (license license:bsd-3))) +(define-public python-pods + (package + (name "python-pods") + (version "0.1.14") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pods" version)) + (sha256 + (base32 "157xxs12qbnz1g6agy0a4dqhsa4msbqryrxpg5w3r3pb8gxdl4dh")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #f)) ;no test suite + (propagated-inputs (list python-pandas python-pyyaml python-scipy + python-tables)) + (home-page "https://github.com/lawrennd/ods") + (synopsis "Python software for Open Data Science") + (description "This package provides utilities and tools for open data +science including tools for accessing data sets in Python.") + (license license:bsd-3))) + (define-public python-pyfma (package (name "python-pyfma") |