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-rw-r--r--gnu/packages/cran.scm157
1 files changed, 90 insertions, 67 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1509ff5d0d..ce36a6a8da 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -290,14 +290,13 @@ single step.")
(define-public r-rvest
(package
(name "r-rvest")
- (version "0.3.4")
+ (version "0.3.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "rvest" version))
(sha256
- (base32
- "0ji5lk8g1gbv4d9c4jg1fg6rgsqrrwkm05j1id7drdw9kqdifgj1"))))
+ (base32 "0r0a5jic09xw5pk0x42pr99r3zab5m9s4x85ymx1sl769jz42zqf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-httr" ,r-httr)
@@ -1296,14 +1295,14 @@ including functions for geolocation and routing.")
(define-public r-haven
(package
(name "r-haven")
- (version "2.1.1")
+ (version "2.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "haven" version))
(sha256
(base32
- "12h64r2v2451igyl7v4w2kg0hzw9rnanph0m7smffq29ybkv9g4h"))))
+ "0g9d6mxqmrw2zdms78jpx2sx73pczlyy771v1h5hmxqz9sqyk7hr"))))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
@@ -1311,8 +1310,10 @@ including functions for geolocation and routing.")
`(("r-forcats" ,r-forcats)
("r-hms" ,r-hms)
("r-rcpp" ,r-rcpp)
+ ("r-rlang" ,r-rlang)
("r-readr" ,r-readr)
- ("r-tibble" ,r-tibble)))
+ ("r-tibble" ,r-tibble)
+ ("r-tidyselect" ,r-tidyselect)))
(home-page "https://haven.tidyverse.org")
(synopsis "Import and Export 'SPSS', 'Stata' and 'SAS' Files")
(description
@@ -1586,13 +1587,13 @@ you to rapidly iterate while developing a package.")
(define-public r-rcpp
(package
(name "r-rcpp")
- (version "1.0.2")
+ (version "1.0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rcpp" version))
(sha256
- (base32 "170jlmjrs92z5qdv58badhxycjvfjpqwwpic7rm13pc9zkb3i4xd"))))
+ (base32 "03h3zyjq948y0hrrs95lfk4zgx6wfrg64hjlrfrzf5na7bfh0d9b"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr))) ; for vignettes
@@ -2056,14 +2057,13 @@ most popular ones.")
(define-public r-sp
(package
(name "r-sp")
- (version "1.3-1")
+ (version "1.3-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "sp" version))
(sha256
- (base32
- "17xm1ig80p9wc860hm3bgishz6lj9fxgwqidj7rkbk4ap99qp62p"))))
+ (base32 "0kpjsqh3lzqp1m0avsvm54lazlgwfx3hyf0av3mvbyslsanj42ll"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -2584,14 +2584,14 @@ regression using Kernel Ridge Regression.")
(define-public r-prodlim
(package
(name "r-prodlim")
- (version "2018.04.18")
+ (version "2019.10.13")
(source
(origin
(method url-fetch)
(uri (cran-uri "prodlim" version))
(sha256
(base32
- "1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb"))))
+ "0rsyfpz667y5cijmq33l318mrdw8r340khp72gcg8n490b1g0176"))))
(build-system r-build-system)
(propagated-inputs
`(("r-kernsmooth" ,r-kernsmooth)
@@ -3886,13 +3886,13 @@ iVAT).")
(define-public r-xfun
(package
(name "r-xfun")
- (version "0.10")
+ (version "0.11")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
- (base32 "065ygh046ah43p5aqyrkv2vkxcnvnb4j7blfdygysg6hmqzp4pbv"))))
+ (base32 "0dncw6bqkal7nyarrrrj9arxy0y3nkdzmrbibcjh84m1cxd4phiw"))))
(build-system r-build-system)
(home-page "https://github.com/yihui/xfun")
(synopsis "Miscellaneous functions")
@@ -4030,14 +4030,14 @@ terminals.")
(define-public r-tinytex
(package
(name "r-tinytex")
- (version "0.16")
+ (version "0.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "tinytex" version))
(sha256
(base32
- "1dadq9l0527v038b1k1dyfs0dklsgxnmplls3qhqprfgskif8mga"))))
+ "0mgxrbj4gam2gvxfk26nq820vsfjggj81m2l7j9m8vp361k15r0w"))))
(build-system r-build-system)
(propagated-inputs
`(("r-xfun" ,r-xfun)))
@@ -5266,17 +5266,19 @@ additional external tools on any platform.")
(define-public r-openxlsx
(package
(name "r-openxlsx")
- (version "4.1.0.1")
+ (version "4.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "openxlsx" version))
(sha256
(base32
- "1lflygpi1z4rlb1c6g6wsmi334maiiy7jhpg6ph4sw8lpvg12w4b"))))
+ "087zivh9xdh1kk8zci67ys0m2xq0slzwgnf0jl05yy4gsgb6nmyx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
+ ("r-rlang" ,r-rlang)
+ ("r-stringi" ,r-stringi)
("r-zip" ,r-zip)))
(home-page "https://github.com/awalker89/openxlsx")
(synopsis "Read, write and edit XLSX files")
@@ -5467,26 +5469,52 @@ user's computer should be used to save data, caches and logs. It is a port of
Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
(license license:expat)))
+(define-public r-renv
+ (package
+ (name "r-renv")
+ (version "0.8.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "renv" version))
+ (sha256
+ (base32
+ "0034jlaq7z40q3hcpkjlaff37dpn46kvxvzw4scbwlw4x9q8sx9j"))))
+ (properties `((upstream-name . "renv")))
+ (build-system r-build-system)
+ (home-page "https://rstudio.github.io/renv")
+ (synopsis "Project environments")
+ (description
+ "This package provides a dependency management toolkit for R. Using
+renv, you can create and manage project-local R libraries, save the state of
+these libraries to a lockfile, and later restore your library as required.
+Together, these tools can help make your projects more isolated, portable, and
+reproducible.")
+ (license license:expat)))
+
(define-public r-learnr
(package
(name "r-learnr")
- (version "0.9.2.1")
+ (version "0.10.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "learnr" version))
(sha256
(base32
- "0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5"))))
+ "0278q9nbkc4nb0rp930kjrwyidf0v7y38d1s187m4f4bs7ha82k6"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-evaluate" ,r-evaluate)
+ `(("r-checkmate" ,r-checkmate)
+ ("r-ellipsis" ,r-ellipsis)
+ ("r-evaluate" ,r-evaluate)
("r-htmltools" ,r-htmltools)
("r-htmlwidgets" ,r-htmlwidgets)
("r-jsonlite" ,r-jsonlite)
("r-knitr" ,r-knitr)
("r-markdown" ,r-markdown)
("r-rappdirs" ,r-rappdirs)
+ ("r-renv" ,r-renv)
("r-rmarkdown" ,r-rmarkdown)
("r-rprojroot" ,r-rprojroot)
("r-shiny" ,r-shiny)
@@ -5654,14 +5682,14 @@ and adds the annotation to the plot.")
(define-public r-ggpubr
(package
(name "r-ggpubr")
- (version "0.2.3")
+ (version "0.2.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggpubr" version))
(sha256
(base32
- "0i81mmz4qn9yzcgfa6dhkcrx4ddlflkm2c3b40isc8all43rm8rn"))))
+ "0ln1gh3zlfx5s7zqcpvfdiksq74v1pma5kwkhc6r0riqnjjd19pf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cowplot" ,r-cowplot)
@@ -5936,14 +5964,14 @@ functions.")
(define-public r-rjags
(package
(name "r-rjags")
- (version "4-9")
+ (version "4-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "rjags" version))
(sha256
(base32
- "1vrmxxfnia2mkmfkp5yaq5qrlh4xg3ggab6fnj14mrp1231wb91a"))))
+ "1nhaim84ww8fd6m8xlpmngqcnp2qpql29ahc38366fxja3ghngmx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-coda" ,r-coda)))
@@ -5989,14 +6017,14 @@ references and Rd files.")
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.5")
+ (version "0.3.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "005kaxjhr40shpav2pg7s7gj8f49579r7rbgwlncbwv16nn0rbbg"))))
+ "1i6jmnbkx7gd0qyf6akhizmxp7y1dh3h7a886mcbmrzka9d60zh4"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
@@ -6309,14 +6337,14 @@ functions.")
(define-public r-flextable
(package
(name "r-flextable")
- (version "0.5.5")
+ (version "0.5.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "flextable" version))
(sha256
(base32
- "1q6x9mfk5gikqjbbra1dn8hs1rq5ws99jdjav3m113gx9f2j5yxh"))))
+ "1f869f2dfqkzhf6yix7xcbs8rn1nwq3sg623h74zg6h1pl6px66w"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
@@ -6685,14 +6713,14 @@ bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.")
(define-public r-rootsolve
(package
(name "r-rootsolve")
- (version "1.7")
+ (version "1.8.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rootSolve" version))
(sha256
(base32
- "08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8"))))
+ "0skrspq7sd7gaq73w91km14v8znc8chncgy64hvjgcng2xw15phx"))))
(properties `((upstream-name . "rootSolve")))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
@@ -6880,13 +6908,13 @@ second male (P2) based on the best fit distribution.")
(define-public r-abcrf
(package
(name "r-abcrf")
- (version "1.8")
+ (version "1.8.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "abcrf" version))
(sha256
- (base32 "0r31ki89z8zzcffm0yvd2zw3q96rk6g6fnwwkql902mgajbrha1f"))))
+ (base32 "1ghbd24yhqy3xhdxas6ccn84nkavqpgldx5ck8kijknc7qjm8k27"))))
(build-system r-build-system)
(propagated-inputs
`(("r-doparallel" ,r-doparallel)
@@ -8275,14 +8303,14 @@ effects models and Bayesian models.")
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "0.12.0")
+ (version "0.13.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "0idfycjk05gyykfp9ibmhxfcjvd01ikh1dl0fb4nqw6znw3ar0xp"))))
+ "0ryfbaav0k874kbwmhbiv7fan93dmkpaimm1iw5kryjhhs3917lb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@@ -8291,7 +8319,6 @@ effects models and Bayesian models.")
("r-mass" ,r-mass)
("r-purrr" ,r-purrr)
("r-rlang" ,r-rlang)
- ("r-scales" ,r-scales)
("r-sjlabelled" ,r-sjlabelled)
("r-sjmisc" ,r-sjmisc)))
(home-page "https://github.com/strengejacke/ggeffects")
@@ -8922,14 +8949,14 @@ address a bug.")
(define-public r-rcppannoy
(package
(name "r-rcppannoy")
- (version "0.0.13")
+ (version "0.0.14")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppAnnoy" version))
(sha256
(base32
- "1jibp9b07c5ka1kif0nl7f168hxfvysj32wnmnxg85l663hmvm8j"))))
+ "1wiigx5g5788j6lyc3f6bs1rsvc4alyc3052g35hxl1giinxmhn4"))))
(properties `((upstream-name . "RcppAnnoy")))
(build-system r-build-system)
(propagated-inputs
@@ -9124,14 +9151,13 @@ isosurfaces.")
(define-public r-ks
(package
(name "r-ks")
- (version "1.11.5")
+ (version "1.11.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "ks" version))
(sha256
- (base32
- "06ymx244yknmpl6935l4pafqbm4gcbpnhqg7rinql6rrfr9mcrag"))))
+ (base32 "0hcccjfqnzdxkmnfzq8c5a7yhc138azwyl7rp29d1vl1jawwrwfq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-fnn" ,r-fnn)
@@ -9583,13 +9609,13 @@ manipulate tree data.")
(define-public r-rvcheck
(package
(name "r-rvcheck")
- (version "0.1.5")
+ (version "0.1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "rvcheck" version))
(sha256
- (base32 "15222q3sglq0mad5q806p99fhrb96qizmpqw35fa1rb148f95paf"))))
+ (base32 "11n3qxapxcqsa0771s9q8n95kxmfyflya1d6wz4mm0lz0i6q55ia"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocmanager" ,r-biocmanager)
@@ -9987,14 +10013,13 @@ creating color scales and calculating color distances.")
(define-public r-ore
(package
(name "r-ore")
- (version "1.6.2")
+ (version "1.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "ore" version))
(sha256
- (base32
- "1l1ziljgm5gwjhvjq42wi5vcwbxlaj5dl9w8bhz0wh8vx4ajj07m"))))
+ (base32 "1vh6w3arrhgkfjjjw7ci91xmz4wpfr3cmwd5zkqch89dgn07skkv"))))
(build-system r-build-system)
(home-page "https://github.com/jonclayden/ore")
(synopsis "R interface to the Onigmo regular expression library")
@@ -10878,13 +10903,13 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.")
(define-public r-spam
(package
(name "r-spam")
- (version "2.3-0.2")
+ (version "2.4-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spam" version))
(sha256
- (base32 "0czmzwhvcs0shm1asvphhz366df3n7vrlls4cfpq5b3i19fak3w4"))))
+ (base32 "0xb7a0x1i93kzijr518m9plzmg8s3mxh5anwfx9xrkg5ipldvz10"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dotcall64" ,r-dotcall64)))
@@ -10907,13 +10932,13 @@ Differences with other sparse matrix packages are:
(define-public r-fields
(package
(name "r-fields")
- (version "9.9")
+ (version "10.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "fields" version))
(sha256
- (base32 "1qbqdqq76xgnlbc9z643zn4s8k493h1jmav2f465hfvp63306br6"))))
+ (base32 "173zm5vr236ydiq0v27qy0l3x7h9fc7jly38iakg77j26i0a01il"))))
(build-system r-build-system)
(propagated-inputs
`(("r-maps" ,r-maps)
@@ -11100,14 +11125,14 @@ putative directions).")
(define-public r-rbamtools
(package
(name "r-rbamtools")
- (version "2.16.11.2")
+ (version "2.16.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "rbamtools" version))
(sha256
(base32
- "0gzkb1xyrkriv45wq8gv7qfwjslnvwkfkk5jjc4wg5kmm0ydpdzj"))))
+ "0qj37ljdva3v29s01dkrbg31mcfzy3bl145cp40d54v4h9xhcghc"))))
(build-system r-build-system)
(inputs `(("zlib" ,zlib)))
(propagated-inputs
@@ -11383,14 +11408,14 @@ them in distributed compute environments.")
(define-public r-future
(package
(name "r-future")
- (version "1.14.0")
+ (version "1.15.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "future" version))
(sha256
(base32
- "1jyv2wlmpfqbk3hw269h4xg36na3wh1kd1lxmwdb40bsv4850lqa"))))
+ "1cbp7agb9lipjxsh7xm1yphh8a4hrjy7wrbkvhsxn1swh0c4s3b7"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
@@ -13080,13 +13105,13 @@ either PDF/EPS files.")
(define-public r-polspline
(package
(name "r-polspline")
- (version "1.1.16")
+ (version "1.1.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "polspline" version))
(sha256
- (base32 "0d49h7if8h6d784nsnqqxakg19kvl8cmz8k53901m2h0c0amlfxa"))))
+ (base32 "0c7fnxpqpy3hibiim4yib6l6bq363s97wwvllxp4lp8h06fjcyyn"))))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://cran.r-project.org/web/packages/polspline/")
@@ -13336,13 +13361,13 @@ SELECT or UPDATE queries to an end-point.")
(define-public r-bookdown
(package
(name "r-bookdown")
- (version "0.14")
+ (version "0.15")
(source (origin
(method url-fetch)
(uri (cran-uri "bookdown" version))
(sha256
(base32
- "1jiq2d292y0l3f4npyfzfpnmb0sqxsl212kkjfbjg5301h0na762"))))
+ "0pgkabaqsckaz8z1nlza84jp172jyzv17kx5dily43jfx5psy2ap"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
@@ -13421,14 +13446,13 @@ data manipulation and visualization.")
(define-public r-kernlab
(package
(name "r-kernlab")
- (version "0.9-27")
+ (version "0.9-29")
(source
(origin
(method url-fetch)
(uri (cran-uri "kernlab" version))
(sha256
- (base32
- "1m0xqf6gyvwayz7w3c83y32ayvnlz0jicj8ijk808zq9sh7dbbgn"))))
+ (base32 "0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/kernlab")
(synopsis "Kernel-based machine learning tools")
@@ -13784,16 +13808,15 @@ consists of @code{grid} grobs and viewports that can then be manipulated with
(define-public r-farver
(package
(name "r-farver")
- (version "1.1.0")
+ (version "2.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "farver" version))
(sha256
(base32
- "1dllgx121al374gyp9pjv1m8ip4imm8zhbgyh1970dsz2c4z71i0"))))
+ "0aq1hk561pz3s3lpay1adwsihha6mxp7zbj4n1m6307g34awlhhn"))))
(build-system r-build-system)
- (propagated-inputs `(("r-rcpp" ,r-rcpp)))
(home-page "https://github.com/thomasp85/farver")
(synopsis "Vectorized color conversion and comparison")
(description
@@ -14862,14 +14885,14 @@ includes data sets from oceanography.")
(define-public r-ggfortify
(package
(name "r-ggfortify")
- (version "0.4.7")
+ (version "0.4.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggfortify" version))
(sha256
(base32
- "1wk9j0xg5hj9i1vf62qjiphv8cbsgq7y6baay3pfl3wyb2dwgci0"))))
+ "191q2z7w0l4v7swjlxs2hjgbjngw2838688s7ygnj0kigsm310f3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)