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-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 58ffbff633..e5c3bd0c86 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9454,6 +9454,35 @@ microarrays or GRanges for sequencing data.")
@dfn{Kyoto Encyclopedia of Genes and Genomes} (KEGG) REST server.")
(license license:artistic2.0)))
+(define-public r-gage
+ (package
+ (name "r-gage")
+ (version "2.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gage" version))
+ (sha256
+ (base32
+ "1r14p88q3y736pkqm4pdimf1izy1xy3xgivmj3cr4dv65kjny1zk"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-graph" ,r-graph)
+ ("r-keggrest" ,r-keggrest)))
+ (home-page "http://www.biomedcentral.com/1471-2105/10/161")
+ (synopsis "Generally applicable gene-set enrichment for pathway analysis")
+ (description
+ "GAGE is a published method for gene set (enrichment or GSEA) or pathway
+analysis. GAGE is generally applicable independent of microarray or RNA-Seq
+data attributes including sample sizes, experimental designs, assay platforms,
+and other types of heterogeneity. The gage package provides functions for
+basic GAGE analysis, result processing and presentation. In addition, it
+provides demo microarray data and commonly used gene set data based on KEGG
+pathways and GO terms. These funtions and data are also useful for gene set
+analysis using other methods.")
+ (license license:gpl2+)))
+
(define-public r-qvalue
(package
(name "r-qvalue")