diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 60 |
1 files changed, 31 insertions, 29 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5e2e0796a0..9dcc5bc92c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -172,47 +172,49 @@ (define-public aragorn (package (name "aragorn") - (version "1.2.38") + (version "1.2.41") (source (origin (method url-fetch) - (uri (string-append - "http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn" - version ".tgz")) + (uri (string-append "https://www.ansikte.se/ARAGORN/Downloads/" + "aragorn" version ".c")) (sha256 (base32 - "09i1rg716smlbnixfm7q1ml2mfpaa2fpn3hwjg625ysmfwwy712b")))) + "0jkzx7sqiarydvz3bwaxh790fpvpkfc926dhsza1dbdhq32ir8wj")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; there are no tests - #:phases - (modify-phases %standard-phases - (delete 'configure) - (replace 'build - (lambda _ - (invoke "gcc" - "-O3" - "-ffast-math" - "-finline-functions" - "-o" - "aragorn" - (string-append "aragorn" ,version ".c")) - #t)) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (man (string-append out "/share/man/man1"))) - (install-file "aragorn" bin) - (install-file "aragorn.1" man)) - #t))))) - (home-page "http://mbio-serv2.mbioekol.lu.se/ARAGORN") + (list + #:tests? #f ; there are no tests + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda _ + (invoke "gcc" "-O3" "-ffast-math" "-finline-functions" + "-o" "aragorn" #$source))) + (replace 'install + (lambda* (#:key inputs #:allow-other-keys) + (let ((bin (string-append #$output "/bin")) + (man (string-append #$output "/share/man/man1"))) + (install-file "aragorn" bin) + (mkdir-p man) + (copy-file (assoc-ref inputs "aragorn.1") + (string-append man "/aragorn.1")))))))) + (native-inputs + `(("aragorn.1" + ,(origin + (method url-fetch) + (uri "https://www.ansikte.se/ARAGORN/Downloads/aragorn.1") + (sha256 + (base32 + "0bn9lapa6f0cl07dbn2fjrapirv9d4bk7w248w39fhb4vbczcc3f")))))) + (home-page "https://www.ansikte.se/ARAGORN/") (synopsis "Detect tRNA, mtRNA and tmRNA genes in nucleotide sequences") (description "Aragorn identifies transfer RNA, mitochondrial RNA and transfer-messenger RNA from nucleotide sequences, based on homology to known tRNA consensus sequences and RNA structure. It also outputs the secondary structure of the predicted RNA.") - (license license:gpl2))) + (license license:gpl3+))) (define-public bamtools (package |