diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 66e710c56d..04c1e652b7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3516,6 +3516,42 @@ Bioconductor microarray data containers @code{(ExpressionSet}, supported.") (license license:lgpl2.0+))) +(define-public r-arraymvout + (package + (name "r-arraymvout") + (version "1.58.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "arrayMvout" version)) + (sha256 + (base32 "1wdqcfa0h070lky4m2h5k4wg8lg7014y0gk95gip5zags29zjwqb")))) + (properties `((upstream-name . "arrayMvout"))) + (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-before 'install 'change-home-dir + (lambda _ + ;; Change from /homeless-shelter to /tmp for write permission. + (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list r-affy + r-affycontam + r-biobase + r-lumi + r-mdqc + r-parody)) + (home-page "https://bioconductor.org/packages/arrayMvout") + (synopsis "Multivariate outlier detection for expression array QA") + (description + "This package supports the application of diverse quality metrics to +AffyBatch instances, summarizing these metrics via PCA, and then performing +parametric outlier detection on the PCs to identify aberrant arrays with a +fixed Type I error rate.") + (license license:artistic2.0))) + (define-public r-asafe (package (name "r-asafe") |