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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa4b8ef89b..8abbdfd026 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6850,6 +6850,37 @@ characterization and visualization of a wide range of mutational patterns in SNV base substitution data.") (license license:expat))) +(define-public r-msa + (package + (name "r-msa") + (version "1.30.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "msa" version)) + (sha256 + (base32 + "064hmry0zhmpchxgjsw0krsybr9v9gbsz26zmj2a39pg1nggwbq4")))) + (properties `((upstream-name . "msa"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biostrings + r-iranges + r-rcpp + r-s4vectors)) + (native-inputs (list r-knitr)) + (home-page "http://www.bioinf.jku.at/software/msa/") + (synopsis "Multiple sequence alignment") + (description + "The msa package provides a unified R/Bioconductor interface to the +multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. +All three algorithms are integrated in the package, therefore, they do not +depend on any external software tools and are available for all major +platforms. The multiple sequence alignment algorithms are complemented by a +function for pretty-printing multiple sequence alignments using the LaTeX +package TeXshade.") + (license license:gpl2+))) + (define-public r-msnbase (package (name "r-msnbase") |