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-rw-r--r--gnu/packages/bioconductor.scm40
1 files changed, 20 insertions, 20 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5cd6021cce..f38b787bdf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3464,13 +3464,13 @@ for use in Bioconductor’s AnnotationHub.")
(define-public r-anvil
(package
(name "r-anvil")
- (version "1.14.1")
+ (version "1.14.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "AnVIL" version))
(sha256
(base32
- "06n0as71m3dfbnzjfq8f1s0r40w4flc8am7zb0293c1037clmcig"))))
+ "1vfriymy1v3mxahfdf4sd6rawi0qy7vzxrymi852w49fmy54bgp7"))))
(properties `((upstream-name . "AnVIL")))
(build-system r-build-system)
(propagated-inputs
@@ -3789,13 +3789,13 @@ sequencing data.")
(define-public r-anf
(package
(name "r-anf")
- (version "1.22.0")
+ (version "1.24.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ANF" version))
(sha256
(base32
- "08vkkfccfq8j4hanxsmjx5657kkw4qcp46qfhqvp1sd6wym69wzw"))))
+ "0yal8lbillhj3zi2rcdk7k9r748jxm3196z54y1674qxzpvp24rk"))))
(properties `((upstream-name . "ANF")))
(build-system r-build-system)
(propagated-inputs
@@ -7563,13 +7563,13 @@ global-scaling and full-quantile normalization.")
(define-public r-edger
(package
(name "r-edger")
- (version "4.0.15")
+ (version "4.0.16")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "edgeR" version))
(sha256
(base32
- "08fsb0h4kqm31ynrhxinmnwjyij1350v352411q11iv8v9sk4z48"))))
+ "0jflbh1wsszz98y0y294g69mm81fwwxfbhpi3kmdncin8bwf8ifi"))))
(properties `((upstream-name . "edgeR")))
(build-system r-build-system)
(propagated-inputs
@@ -10950,13 +10950,13 @@ single-cell RNA-seq.")
(define-public r-seqarray
(package
(name "r-seqarray")
- (version "1.42.0")
+ (version "1.42.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "SeqArray" version))
(sha256
(base32
- "0zs60yh3x6kgy6izn11d400vw59ww2w6bmhg6fw5ijinknyr3ixc"))))
+ "1bwqyvvfwwscznwi1bm4wh2pqf0fmq68g7siwbbw5ypj087ibnnm"))))
(properties `((upstream-name . "SeqArray")))
(build-system r-build-system)
(propagated-inputs (list r-biostrings
@@ -13029,14 +13029,14 @@ determining dependencies between variables, code improvement suggestions.")
(define-public r-chippeakanno
(package
(name "r-chippeakanno")
- (version "3.36.0")
+ (version "3.36.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ChIPpeakAnno" version))
(sha256
(base32
- "012hhakhk81qk1hi4igfa4vji678gmyvdxi05z9mdsx721lwwy2i"))))
+ "1jmg958v8ai9v3mpizj24nc0vsl564inndm0irflprs1ky90k8vl"))))
(properties `((upstream-name . "ChIPpeakAnno")))
(build-system r-build-system)
(propagated-inputs
@@ -16206,14 +16206,14 @@ Affymetrix arrays.")
(define-public r-a4
(package
(name "r-a4")
- (version "1.50.0")
+ (version "1.50.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "a4" version))
(sha256
(base32
- "1hdqnipg326z2k7vs6sc1brc9lvvhmr2l6cjp4f9a205g4q7r9rr"))))
+ "0sibsmn7ma2imhfn2pn1fvy6hinzlmsczmx944fzg0aj1lpjcdqr"))))
(build-system r-build-system)
(propagated-inputs
(list r-a4base r-a4classif r-a4core r-a4preproc r-a4reporting))
@@ -19507,14 +19507,14 @@ populations, splice site strength, conservation, etc.")
(define-public r-variancepartition
(package
(name "r-variancepartition")
- (version "1.32.3")
+ (version "1.32.5")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "variancePartition" version))
(sha256
(base32
- "1mbjh1n13y08mc8vdm10lsd3i7mc4vm3855lvm08fm9685siz909"))))
+ "1yrss51gwg73rlva0xhk34md0cx43h2j4vfk0z2hzchr2r1amzmc"))))
(properties
`((upstream-name . "variancePartition")))
(build-system r-build-system)
@@ -21531,14 +21531,14 @@ provided.")
(define-public r-hdf5array
(package
(name "r-hdf5array")
- (version "1.30.0")
+ (version "1.30.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "HDF5Array" version))
(sha256
(base32
- "0p52n96mydqszpq1ysmbh5xs4n4icqsd0gbxl5wpkcwvvhxliw8b"))))
+ "17cjjlgbp5kj0cpjm6915wy4cm6h5wl6d59j4na1s6kvgxx95qd0"))))
(properties `((upstream-name . "HDF5Array")))
(build-system r-build-system)
(inputs
@@ -21644,14 +21644,14 @@ packages.")
(define-public r-beachmat
(package
(name "r-beachmat")
- (version "2.18.0")
+ (version "2.18.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "beachmat" version))
(sha256
(base32
- "1yixv6vs1q2k4vx17bq4nar3g4v2076i5dq77gh63mlka46qr3g2"))))
+ "1kz8jn3kaqrhvk1dd92l7w45mmwabcqb0508fv4i4w307ja8xk2l"))))
(build-system r-build-system)
(propagated-inputs
(list r-biocgenerics r-delayedarray r-matrix r-rcpp r-sparsearray))
@@ -24293,14 +24293,14 @@ fragments by exact matching.")
(define-public r-dmrseq
(package
(name "r-dmrseq")
- (version "1.22.0")
+ (version "1.22.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "dmrseq" version))
(sha256
(base32
- "0z53vh5qirkyn7yw3g2m2kj6dzii96l81vc8j59n2dl7p602l9a2"))))
+ "10ps9k5cp2adpx91g23gc9hl1qzzax5w1mxjcjaii7knkh70cz3p"))))
(properties `((upstream-name . "dmrseq")))
(build-system r-build-system)
(propagated-inputs