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| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index df50fbc547..ce43bfe8b9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5701,6 +5701,34 @@ with multiple R processes supported by the package @code{parallel}.") @code{gdsfmt} package.") (license license:gpl3))) +(define-public r-seqbias + (package + (name "r-seqbias") + (version "1.32.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "seqbias" version)) + (sha256 + (base32 + "1pk97jsq0rxijsdm5wnmlw79mhy19skdq1h3mmfbdjh560md47lw")))) + (properties `((upstream-name . "seqbias"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-genomicranges" ,r-genomicranges) + ("r-rhtslib" ,r-rhtslib))) + (inputs + `(("zlib" ,zlib))) ; This comes from rhtslib. + (home-page "https://bioconductor.org/packages/seqbias/") + (synopsis "Estimation of per-position bias in high-throughput sequencing data") + (description + "This package implements a model of per-position sequencing bias in +high-throughput sequencing data using a simple Bayesian network, the structure +and parameters of which are trained on a set of aligned reads and a reference +genome sequence.") + (license license:lgpl3))) + (define-public r-wavcluster (package (name "r-wavcluster") |