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| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 427fa4ebfe..72a0fe377f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7462,6 +7462,37 @@ chromosome region or transcript models of lincRNA genes.") ;; No version specified (license license:lgpl3+))) +(define-public r-epidish + (package + (name "r-epidish") + (version "2.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "EpiDISH" version)) + (sha256 + (base32 "170ym3y6gd1kxghz2g5ynvgi1wrxx87b568cjcvzidpqkrkg87s6")))) + (properties `((upstream-name . "EpiDISH"))) + (build-system r-build-system) + (propagated-inputs (list r-e1071 + r-locfdr + r-mass + r-matrix + r-matrixstats + r-quadprog + r-stringr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/sjczheng/EpiDISH") + (synopsis "Epigenetic dissection of intra-sample-heterogeneity") + (description + "@code{EpiDISH} is a R package to infer the proportions of a priori known +cell-types present in a sample representing a mixture of such cell-types. +Right now, the package can be used on DNAm data of whole blood, generic +epithelial tissue and breast tissue. Besides, the package provides a function +that allows the identification of differentially methylated cell-types and +their directionality of change in Epigenome-Wide Association Studies.") + (license license:gpl2))) + (define-public r-fastseg (package (name "r-fastseg") |