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-rw-r--r--gnu/packages/bioinformatics.scm9
1 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ff7def8a4a..e495b7df3e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11217,7 +11217,7 @@ based methods.")
(define-public pigx-sars-cov2-ww
(package
(name "pigx-sars-cov2-ww")
- (version "0.0.3")
+ (version "0.0.4")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_sarscov2_ww/"
@@ -11225,7 +11225,7 @@ based methods.")
"/pigx_sars-cov2-ww-" version ".tar.gz"))
(sha256
(base32
- "1hhdbwsnl0d37lrmisw5hr630xr8s41qvxflm05anh11rj8n22yw"))
+ "0axnmz4d8zgir888mc0cilcq4m3v41xmjmpp3w3444lciwnxydvs"))
(patches (search-patches "pigx-sars-cov2-ww-no-citeproc.patch"))))
(build-system gnu-build-system)
(arguments
@@ -11239,9 +11239,13 @@ based methods.")
("autoconf" ,autoconf)))
(inputs
`(("bash-minimal" ,bash-minimal)
+ ("bbmap" ,bbmap)
+ ("bedtools" ,bedtools)
("bwa" ,bwa)
("ensembl-vep" ,ensembl-vep)
+ ("fastp" ,fastp)
("fastqc" ,fastqc)
+ ("ivar" ,ivar)
("kraken2" ,kraken2)
("krona-tools" ,krona-tools)
("lofreq" ,lofreq)
@@ -11257,6 +11261,7 @@ based methods.")
("r-minimal" ,r-minimal)
("r-plotly" ,r-plotly)
("r-qpcr" ,r-qpcr)
+ ("r-r-utils" ,r-r-utils)
("r-reshape2" ,r-reshape2)
("r-rmarkdown" ,r-rmarkdown)
("r-stringr" ,r-stringr)