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authorRicardo Wurmus <rekado@elephly.net>2020-03-24 11:05:01 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-03-24 11:06:01 +0100
commitb0d1da986b262685d092bb192feb49ab9db1dd8a (patch)
tree810022a79575f51f02ac9466fd8c12fb92df05d3 /gnu
parent8ff63864916f40b5eb03a96192cb59a2e97cafe5 (diff)
downloadguix-b0d1da986b262685d092bb192feb49ab9db1dd8a.tar
guix-b0d1da986b262685d092bb192feb49ab9db1dd8a.tar.gz
gnu: r-harmony: Update to 0.1.
* gnu/packages/cran.scm (r-harmony): Update to 0.1. [native-inputs]: Add autoconf.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/cran.scm73
1 files changed, 39 insertions, 34 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 39caf56a13..fe29b9f581 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -42,6 +42,7 @@
#:use-module (guix utils)
#:use-module (guix build-system r)
#:use-module (gnu packages algebra)
+ #:use-module (gnu packages autotools)
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages c)
@@ -15690,43 +15691,47 @@ dataset-specific factors.")
(license license:gpl3)))
(define-public r-harmony
- ;; There are no tagged commits
- (let ((commit "4d1653870d4dd70fff1807c182882db1fbf9af5a")
- (revision "1"))
- (package
- (name "r-harmony")
- (version (git-version "1.0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/immunogenomics/harmony")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1gasdldr4aalr9h2q9kmm3y4i7azkgnhdn4bmvsszs7lg9xacw85"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-cowplot" ,r-cowplot)
- ("r-dplyr" ,r-dplyr)
- ("r-ggplot2" ,r-ggplot2)
- ("r-irlba" ,r-irlba)
- ("r-matrix" ,r-matrix)
- ("r-rcpp" ,r-rcpp)
- ("r-rcpparmadillo" ,r-rcpparmadillo)
- ("r-rcppprogress" ,r-rcppprogress)
- ("r-rlang" ,r-rlang)
- ("r-tibble" ,r-tibble)
- ("r-tidyr" ,r-tidyr)))
- (home-page "https://github.com/immunogenomics/harmony")
- (synopsis "Integration of single cell sequencing data")
- (description
- "This package provides an implementation of the Harmony algorithm for
+ (package
+ (name "r-harmony")
+ (version "0.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/immunogenomics/harmony")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ (for-each delete-file '("config.status" "configure"))
+ #t))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cowplot" ,r-cowplot)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-irlba" ,r-irlba)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-rcppprogress" ,r-rcppprogress)
+ ("r-rlang" ,r-rlang)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)))
+ (native-inputs
+ `(("autoconf" ,autoconf)))
+ (home-page "https://github.com/immunogenomics/harmony")
+ (synopsis "Integration of single cell sequencing data")
+ (description
+ "This package provides an implementation of the Harmony algorithm for
single cell integration, described in Korsunsky et al
@url{doi.org/10.1101/461954}. The package includes a standalone Harmony
function and interfaces to external frameworks.")
- (license license:gpl3))))
+ (license license:gpl3)))
(define-public r-covr
(package