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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-05-22 16:30:26 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-05-22 17:44:49 +0200 |
| commit | 9f9127e80ac9338dc426921208e5b88fce6ff72e (patch) | |
| tree | 8ed20488068fd0e25fb31fed812e82e987e027ae /gnu | |
| parent | d658f8c9af3836c844487cfc0aae06901797245d (diff) | |
| download | guix-9f9127e80ac9338dc426921208e5b88fce6ff72e.tar guix-9f9127e80ac9338dc426921208e5b88fce6ff72e.tar.gz | |
gnu: ensembl-vep: Update to 112.
* gnu/packages/bioinformatics.scm (ensembl-vep): Update to 112.
[propagated-inputs]: Add perl-list-moreutils.
[native-inputs]: Add perl-test-deep and perl-test-warnings.
Change-Id: I8c7de9f3dbc8c6fe4d1383f9dc215aeba018af0d
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 11 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 99db702dbf..b7e8e54de2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21425,7 +21425,7 @@ scripts for manipulating 3C/4C/5C/Hi-C data.") (license license:asl2.0))) (define-public ensembl-vep - (let* ((api-version "103") + (let* ((api-version "112") (api-module (lambda (name hash) (origin (method git-fetch) @@ -21437,7 +21437,7 @@ scripts for manipulating 3C/4C/5C/Hi-C data.") (sha256 (base32 hash)))))) (package (name "ensembl-vep") - (version (string-append api-version ".1")) + (version api-version) (source (origin (method git-fetch) @@ -21447,7 +21447,7 @@ scripts for manipulating 3C/4C/5C/Hi-C data.") (file-name (git-file-name name version)) (sha256 (base32 - "1iq7p72cv9b38jz2v8a4slzy2n8y0md487943180ym9xc8qvw09c")))) + "0nznmiln2q6bzd3xp8d5cw56higa5w3g9rmg66956bkfky53chvw")))) (build-system gnu-build-system) (arguments `(#:modules ((guix build gnu-build-system) @@ -21538,6 +21538,7 @@ runtests(@test_files); perl-dbi perl-dbd-mysql perl-libwww + perl-list-moreutils perl-http-tiny perl-json which)) @@ -21548,18 +21549,20 @@ runtests(@test_files); ("perl" ,perl) ("api-module-ensembl" ,(api-module "ensembl" - "0s59rj905g72hljzfpvnx5nxwz925b917y4jp912i23f5gwxh14v")) + "10r576iqrz1p61mqbbfs87w4w3nldi45p51z52mq76f3n00l010h")) ("api-module-ensembl-variation" ,(api-module "ensembl-variation" - "1dvwdzzfjhzymq02b6n4p6j3a9q4jgq0g89hs7hj1apd7zhirgkq")) + "0ad03xnyyqpya1bkg6igq9abqxdmi58j89wn2kb3m4bvy1zs03mf")) ("api-module-ensembl-funcgen" ,(api-module "ensembl-funcgen" - "1x23pv38dmv0w0gby6rv3wds50qghb4v3v1mf43vk55msfxzry8n")) + "1m3dxnr6k9x5hmcsxckpxlqx7vbc82lk74r84vcjijgxjkfa5rpp")) ("api-module-ensembl-io" ,(api-module "ensembl-io" - "14adb2x934lzsq20035mazdkhrkcw0qzb0xhz6zps9vk4wixwaix")) + "1xr6kdqqzmbi3m4bls589d1dfjvbs13dxlbf1y172xjyipvmag43")) + ("perl-test-deep" ,perl-test-deep) + ("perl-test-exception" ,perl-test-exception) ("perl-test-harness" ,perl-test-harness) - ("perl-test-exception" ,perl-test-exception))) + ("perl-test-warnings" ,perl-test-warnings))) (home-page "http://www.ensembl.org/vep") (synopsis "Predict functional effects of genomic variants") (description |