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authorEric Bavier <bavier@member.fsf.org>2016-07-07 16:59:53 -0500
committerEric Bavier <bavier@member.fsf.org>2016-07-20 18:31:16 -0500
commit995a09e055f1c8546009fa6c6af5791a369504cb (patch)
tree8374b42f153e33eb5c41f9fa29a53f8ae3a9e846 /gnu
parentd721c83a6310bcb2ded092e20afb3954b21038fb (diff)
downloadguix-995a09e055f1c8546009fa6c6af5791a369504cb.tar
guix-995a09e055f1c8546009fa6c6af5791a369504cb.tar.gz
gnu: superlu: Update to 5.2.1.
* gnu/packages/maths.scm (superlu): Update to 5.2.1. [source]: Remove non-free MC64 code. [inputs]: Use openblas instead of lapack's BLAS. [build-system]: Use cmake-build-system. [arguments]: Remove custom phases and replace with CMake flags. [license]: List additional licenses for some source and example files.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/maths.scm100
1 files changed, 42 insertions, 58 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 03f874e057..4a60e2f7ce 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1208,74 +1208,56 @@ porting.")
(define-public superlu
(package
(name "superlu")
- (version "4.3")
+ (version "5.2.1")
(source
(origin
(method url-fetch)
(uri (string-append "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/"
"superlu_" version ".tar.gz"))
(sha256
- (base32 "10b785s9s4x0m9q7ihap09275pq4km3k2hk76jiwdfdr5qr2168n"))))
- (build-system gnu-build-system)
+ (base32 "0qzlb7cd608q62kyppd0a8c65l03vrwqql6gsm465rky23b6dyr8"))
+ (modules '((guix build utils)))
+ (snippet
+ ;; Replace the non-free implementation of MC64 with a stub adapted
+ ;; from Debian
+ '(begin
+ (use-modules (ice-9 regex)
+ (ice-9 rdelim))
+ (call-with-output-file "SRC/mc64ad.c"
+ (lambda (port)
+ (display "
+#include <stdio.h>
+#include <stdlib.h>
+void mc64id_(int *a) {
+ fprintf (stderr, \"SuperLU: non-free MC64 not available. Aborting.\\n\");
+ abort ();
+}
+void mc64ad_ (int *a, int *b, int *c, int *d, int *e, double *f, int *g,
+ int *h, int *i, int *j, int *k, double *l, int *m, int *n) {
+ fprintf (stderr, \"SuperLU: non-free MC64 not available. Aborting.\\n\");
+ abort ();
+}\n" port)))
+ ;; Remove the corresponding license verbiage. MC64 license follows
+ ;; a "------" line separator.
+ (with-atomic-file-replacement "License.txt"
+ (let ((rx (make-regexp "-{8}")))
+ (lambda (in out)
+ (let loop ()
+ (let ((line (read-line in 'concat)))
+ (unless (regexp-exec rx line)
+ (display line out)
+ (loop)))))))))))
+ (build-system cmake-build-system)
(native-inputs
`(("tcsh" ,tcsh)))
(inputs
- `(("lapack" ,lapack)
+ `(("blas" ,openblas)
("gfortran" ,gfortran)))
(arguments
- `(#:parallel-build? #f
- #:tests? #f ;tests are run as part of `make all`
- #:phases
- (alist-replace
- 'configure
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (call-with-output-file "make.inc"
- (lambda (port)
- (format port "
-PLAT =
-SuperLUroot = ~a
-SUPERLULIB = ~a/lib/libsuperlu.a
-TMGLIB = libtmglib.a
-BLASDEF = -DUSE_VENDOR_BLAS
-BLASLIB = -L~a/lib -lblas
-LIBS = $(SUPERLULIB) $(BLASLIB)
-ARCH = ar
-ARCHFLAGS = cr
-RANLIB = ranlib
-CC = gcc
-PIC = -fPIC
-CFLAGS = -O3 -DPRNTlevel=0 $(PIC)
-NOOPTS = -O0 $(PIC)
-FORTRAN = gfortran
-FFLAGS = -O2 $(PIC)
-LOADER = $(CC)
-CDEFS = -DAdd_"
- (getcwd)
- (assoc-ref outputs "out")
- (assoc-ref inputs "lapack")))))
- (alist-cons-before
- 'build 'create-install-directories
- (lambda* (#:key outputs #:allow-other-keys)
- (for-each
- (lambda (dir)
- (mkdir-p (string-append (assoc-ref outputs "out")
- "/" dir)))
- '("lib" "include")))
- (alist-replace
- 'install
- (lambda* (#:key outputs #:allow-other-keys)
- ;; Library is placed in lib during the build phase. Copy over
- ;; headers to include.
- (let* ((out (assoc-ref outputs "out"))
- (incdir (string-append out "/include")))
- (for-each (lambda (file)
- (let ((base (basename file)))
- (format #t "installing `~a' to `~a'~%"
- base incdir)
- (copy-file file
- (string-append incdir "/" base))))
- (find-files "SRC" ".*\\.h$"))))
- %standard-phases)))))
+ `(#:configure-flags '("-Denable_blaslib:BOOL=NO" ;do not use internal cblas
+ "-DTPL_BLAS_LIBRARIES=openblas"
+ "-DBUILD_SHARED_LIBS:BOOL=YES"
+ "-DCMAKE_INSTALL_LIBDIR=lib")))
(home-page "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/")
(synopsis "Supernodal direct solver for sparse linear systems")
(description
@@ -1285,7 +1267,9 @@ The library is written in C and is callable from either C or Fortran. The
library routines perform an LU decomposition with partial pivoting and
triangular system solves through forward and back substitution. The library
also provides threshold-based ILU factorization preconditioners.")
- (license license:bsd-3)))
+ (license (list license:bsd-3
+ license:gpl2+ ;EXAMPLE/*fgmr.c
+ (license:fsf-free "file://SRC/colamd.h")))))
(define-public superlu-dist
(package