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authorEric Bavier <bavier@member.fsf.org>2020-12-05 01:00:42 -0600
committerEric Bavier <bavier@member.fsf.org>2020-12-05 11:14:56 -0600
commit705af5403b3a8d7e942820bdff74195a1c3d9c89 (patch)
tree36eb33f20cfce7e15aad28c5451c35dfca5aada9 /gnu
parent38dd27e866f2fc930afbd96223f0f6119d9ab1db (diff)
downloadguix-705af5403b3a8d7e942820bdff74195a1c3d9c89.tar
guix-705af5403b3a8d7e942820bdff74195a1c3d9c89.tar.gz
gnu: superlu-dist: Update to 6.4.0.
* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0 [source]: Use git-fetch, as tarballs are no longer published. * gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first hunk; they are unnecessary.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/maths.scm13
-rw-r--r--gnu/packages/patches/superlu-dist-awpm-grid.patch31
2 files changed, 18 insertions, 26 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 26625d5f50..7d841af8f5 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2975,18 +2975,21 @@ also provides threshold-based ILU factorization preconditioners.")
(define-public superlu-dist
(package
(name "superlu-dist")
- (version "6.2.0")
+ (version "6.4.0")
(source
(origin
- (method url-fetch)
- (uri (string-append "https://portal.nersc.gov/project/sparse/superlu/"
- "superlu_dist_" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/xiaoyeli/superlu_dist")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32 "1ynmwqajc9sc3my2hssa5k9s58ggvizqv9rdss0j7w99pbh5mnvw"))
+ (base32 "0fa29yr72p4yq5ln4rgfsawmi5935n4qcr5niz6864bjladz4lql"))
(modules '((guix build utils)))
(snippet
;; Replace the non-free implementation of MC64 with a stub
'(begin
+ (make-file-writable "SRC/mc64ad_dist.c")
(call-with-output-file "SRC/mc64ad_dist.c"
(lambda (port)
(display "
diff --git a/gnu/packages/patches/superlu-dist-awpm-grid.patch b/gnu/packages/patches/superlu-dist-awpm-grid.patch
index d6cb8e521d..42d1683cc4 100644
--- a/gnu/packages/patches/superlu-dist-awpm-grid.patch
+++ b/gnu/packages/patches/superlu-dist-awpm-grid.patch
@@ -1,8 +1,8 @@
Create the CombBLAS::SpParMat with the MPI_Comm from the input 'gridinfo_t'.
This prevents a warning/error from CombBLAS about using MPI_COMM_WORLD.
---- a/SRC/AWPM_CombBLAS.hpp
-+++ b/SRC/AWPM_CombBLAS.hpp
+--- a/SRC/dHWPM_CombBLAS.hpp
++++ b/SRC/dHWPM_CombBLAS.hpp
@@ -52,7 +52,7 @@
{
printf("AWPM only supports square process grid. Retuning without a permutation.\n");
@@ -12,25 +12,14 @@ This prevents a warning/error from CombBLAS about using MPI_COMM_WORLD.
std::vector< std::vector < std::tuple<int_t,int_t,double> > > data(procs);
/* ------------------------------------------------------------
-@@ -100,11 +100,10 @@
- combblas::AWPM(Adcsc, mateRow2Col, mateCol2Row,true);
-
- // now gather the matching vector
-- MPI_Comm World = mateRow2Col.getcommgrid()->GetWorld();
- int * rdispls = new int[procs];
- int sendcnt = mateRow2Col.LocArrSize();
- int * recvcnt = new int[procs];
-- MPI_Allgather(&sendcnt, 1, MPI_INT, recvcnt, 1, MPI_INT, World);
-+ MPI_Allgather(&sendcnt, 1, MPI_INT, recvcnt, 1, MPI_INT, grid->comm);
- rdispls[0] = 0;
- for(int i=0; i<procs-1; ++i)
+--- a/SRC/zHWPM_CombBLAS.hpp
++++ b/SRC/zHWPM_CombBLAS.hpp
+@@ -52,7 +52,7 @@
{
-@@ -112,7 +111,7 @@
+ printf("AWPM only supports square process grid. Retuning without a permutation.\n");
}
- int_t *senddata = (int_t *)mateRow2Col.GetLocArr();
-
-- MPI_Allgatherv(senddata, sendcnt, combblas::MPIType<int_t>(), ScalePermstruct->perm_r, recvcnt, rdispls, combblas::MPIType<int_t>(), World);
-+ MPI_Allgatherv(senddata, sendcnt, combblas::MPIType<int_t>(), ScalePermstruct->perm_r, recvcnt, rdispls, combblas::MPIType<int_t>(), grid->comm);
+- combblas::SpParMat < int_t, double, combblas::SpDCCols<int_t,double> > Adcsc;
++ combblas::SpParMat < int_t, double, combblas::SpDCCols<int_t,double> > Adcsc(grid->comm);
+ std::vector< std::vector < std::tuple<int_t,int_t,double> > > data(procs);
- delete[] rdispls;
- delete[] recvcnt;
+ /* ------------------------------------------------------------