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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-03 14:05:43 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-03 14:07:48 +0200 |
| commit | 08542026ea6312545d20f408f1743a811ae18f85 (patch) | |
| tree | abd8b2e9efdfab510a479885be1d89b4a651cb54 /gnu | |
| parent | 7277baf50d348a11cd824379f1bb32beb83e7ffb (diff) | |
| download | guix-08542026ea6312545d20f408f1743a811ae18f85.tar guix-08542026ea6312545d20f408f1743a811ae18f85.tar.gz | |
gnu: python-pybedtools: Disable unreliable test.
* gnu/packages/bioinformatics.scm (python-pybedtools)[arguments]: Disable
test_intron_exon_reads test; run tests verbosely.
test_intron_exon_reads
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cfa0263e46..97ad0fc2fd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -806,12 +806,13 @@ intended to behave exactly the same as the original BWK awk.") ;; See https://github.com/daler/pybedtools/issues/192 #:phases (modify-phases %standard-phases - ;; See https://github.com/daler/pybedtools/issues/261 (add-after 'unpack 'disable-broken-tests (lambda _ - ;; This test (pybedtools.test.test_scripts.test_venn_mpl) needs a - ;; graphical environment. (substitute* "pybedtools/test/test_scripts.py" + ;; This test freezes. + (("def test_intron_exon_reads") + "def _do_not_test_intron_exon_reads") + ;; This test fails in the Python 2 build. (("def test_venn_mpl") "def _do_not_test_venn_mpl")) (substitute* "pybedtools/test/test_helpers.py" @@ -868,7 +869,7 @@ intended to behave exactly the same as the original BWK awk.") (mkdir-p "/tmp/test") (copy-recursively "pybedtools/test" "/tmp/test") (with-directory-excursion "/tmp/test" - (invoke "pytest"))))))) + (invoke "pytest" "-v" "--doctest-modules"))))))) (propagated-inputs `(("bedtools" ,bedtools) ("samtools" ,samtools) |