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| author | Afkhami, Navid <Navid.Afkhami@mdc-berlin.de> | 2024-08-20 08:07:04 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-11-01 12:08:18 +0100 |
| commit | 3d7b1a2768ae47303c1772014b0707937621bb0a (patch) | |
| tree | 511eb2980252ddb31c71fb95d2b293cfd42ef039 /gnu/packages | |
| parent | 15374a17d3d7a24dd105c711f1ea246388ed40bf (diff) | |
| download | guix-3d7b1a2768ae47303c1772014b0707937621bb0a.tar guix-3d7b1a2768ae47303c1772014b0707937621bb0a.tar.gz | |
gnu: Add r-spacexr.
* gnu/packages/bioinformatics.scm (r-spacexr): New variable.
Change-Id: Icf2a7dd9d637d14d835c7a428093ba8daf25e25a
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a2ffbd5155..070148cb76 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22719,6 +22719,51 @@ starting from Hi-C data. Each hierarchical level is identified by a minimum value of physical insulation between neighboring domains.") (license license:gpl2+)))) +(define-public r-spacexr + (let ((commit "0a0861e3d1e16014a20e9b743d0e19d3b42231f3") + (revision "1")) + (package + (name "r-spacexr") + (version (git-version "2.2.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dmcable/spacexr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0hqrllzq2hi6dsr8nykn1yp7s3rcbjrv3m624b61n4nxnzza458a")))) + (properties `((upstream-name . "spacexr"))) + (build-system r-build-system) + (propagated-inputs (list r-compquadform + r-data-table + r-doparallel + r-dplyr + r-fields + r-foreach + r-ggplot2 + r-knitr + r-locfdr + r-matrix + r-metafor + r-mgcv + r-pals + r-quadprog + r-readr + r-reshape2 + r-rfast + r-rmarkdown + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/dmcable/spacexr") + (synopsis + "Cell type identification and differential expression in spatial transcriptomics") + (description + "This package is used for cell type identification in spatial transcriptomics. +It also handles cell type-specific differential expression.") + (license license:gpl3)))) + (define-public r-spectre (let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a") (revision "1")) |