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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-05-04 10:15:07 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-05-05 22:38:18 +0200 |
| commit | 1b44a23503809801856e48127332a1fc95c26464 (patch) | |
| tree | 15798aa86c16345ec36392c7cf1c6ac4fd659290 /gnu/packages/python-science.scm | |
| parent | a4039b6994115f642cfec18ab5bba523909ee5e8 (diff) | |
| download | guix-1b44a23503809801856e48127332a1fc95c26464.tar guix-1b44a23503809801856e48127332a1fc95c26464.tar.gz | |
gnu: python-gpy: Update to 1.13.1.
* gnu/packages/python-science.scm (python-gpy): Update to 1.13.1.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove phase 'remove-plotting-tests; add phase 'compatibility.
[native-inputs]: Remove python-nose and python-climin; add python-pytest,
python-matplotlib, and python-pods.
Change-Id: I1ed95e3ad2e8444979fd2cf272d7f3104b1bf2ec
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 38 |
1 files changed, 23 insertions, 15 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 6bfbdc9b71..67221c6307 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -2827,27 +2827,35 @@ for parameterized model creation and handling. Its features include: (define-public python-gpy (package (name "python-gpy") - (version "1.10.0") + (version "1.13.1") (source (origin (method url-fetch) (uri (pypi-uri "GPy" version)) (sha256 (base32 - "1yx65ajrmqp02ykclhlb0n8s3bx5r0xj075swwwigiqaippr7dx2")) - (snippet - #~(begin (use-modules (guix build utils)) - (substitute* "GPy/models/state_space_main.py" - (("collections\\.Iterable") "collections.abc.Iterable")))))) - (build-system python-build-system) + "05d1ry4jpp0srsrmp3qd6s0p2bjc4c0z99450pzdr79vagbfvlk4")))) + (build-system pyproject-build-system) (arguments - `(#:phases (modify-phases %standard-phases - (add-before 'check 'remove-plotting-tests - ;; These fail - (lambda _ - (delete-file "GPy/testing/plotting_tests.py")))))) - (native-inputs (list python-cython python-nose python-climin)) - (propagated-inputs (list python-numpy python-paramz python-scipy - python-six)) + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'compatibility + (lambda _ + ;; This file uses Python 2 statements + (delete-file "GPy/testing/mpi_test__.py") + (substitute* "setup.py" + (("scipy>=1.3.0,<1.12.0") + "scipy>=1.3.0,<=1.13.0")) + ;; Use numpy.exp because scipy.ext no longer exists + (substitute* "GPy/kern/src/sde_standard_periodic.py" + (("sp\\.exp") "np.exp")) + (substitute* "GPy/kern/src/sde_stationary.py" + (("sp\\.poly1d") "np.poly1d") + (("sp\\.roots") "np.roots"))))))) + (native-inputs + (list python-cython python-matplotlib python-pods python-pytest)) + (propagated-inputs + (list python-numpy python-paramz python-scipy python-six)) (home-page "https://sheffieldml.github.io/GPy/") (synopsis "The Gaussian Process Toolbox") (description |