aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authornafkhamdc <navid.afkhami@mdc-berlin.de>2024-04-26 16:08:12 +0000
committerRicardo Wurmus <rekado@elephly.net>2024-05-06 00:07:40 +0200
commite33bf0bbe6ffc5fec83b12755f4ad7fdea857518 (patch)
tree4f53bec2602c14f3a55a6a9bc4b88baa20af5255 /gnu/packages/bioinformatics.scm
parenta710ebec1d70d78dd8b84689388a0b670aafa745 (diff)
downloadguix-e33bf0bbe6ffc5fec83b12755f4ad7fdea857518.tar
guix-e33bf0bbe6ffc5fec83b12755f4ad7fdea857518.tar.gz
gnu: Add python-pyahocorasick.
* gnu/packages/bioinformatics.scm (python-pyahocorasick): New variable. Change-Id: I468bed450351b49cf81344a328841cd77f67cb4e Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8452afaa8b..41e8f07603 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6490,6 +6490,29 @@ Illumina paired-end data (for CASAVA 1.8+).")
average nucleotide identity.")
(license license:expat)))
+(define-public python-pyahocorasick
+ (package
+ (name "python-pyahocorasick")
+ (version "2.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/WojciechMula/pyahocorasick")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1fsnivwcw56q7lwz41c5kbfvxv0v17mmkx43i2a293l49fxj08j8"))))
+ (build-system pyproject-build-system)
+ (native-inputs (list python-pytest python-twine python-wheel))
+ (home-page "https://github.com/WojciechMula/pyahocorasick")
+ (synopsis "Library for finding multiple key strings in text")
+ (description
+ "Pyahocorasick is a fast, memory-efficient library for multi-pattern string search.
+This means that you can find multiple key strings occurrences
+at once in some input text.")
+ (license license:bsd-3)))
+
(define-public exonerate
(package
(name "exonerate")