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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 15:43:53 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 23:32:43 +0100 |
| commit | dd5fc8b78ec5e1bcef35eae409c8faa9b88b6aa3 (patch) | |
| tree | 1459d0e182ee2a66ab51e0f37d84b32025dc9414 /gnu/packages/bioinformatics.scm | |
| parent | e2b927993efc9254a941d035fb17f9ebaf330eac (diff) | |
| download | guix-dd5fc8b78ec5e1bcef35eae409c8faa9b88b6aa3.tar guix-dd5fc8b78ec5e1bcef35eae409c8faa9b88b6aa3.tar.gz | |
gnu: Add r-snpstats.
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2200842164..a08f06ada7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9827,6 +9827,33 @@ of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL, and more.") (license license:artistic2.0))) +(define-public r-snpstats + (package + (name "r-snpstats") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "snpStats" version)) + (sha256 + (base32 + "1x9qwynh2hwl24vq02naf4mchpch7xi2pkdrlgw896k28kx0lvir")))) + (properties `((upstream-name . "snpStats"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-matrix" ,r-matrix) + ("r-survival" ,r-survival) + ("r-zlibbioc" ,r-zlibbioc))) + (home-page "https://bioconductor.org/packages/snpStats") + (synopsis "Methods for SNP association studies") + (description + "This package provides classes and statistical methods for large +@dfn{single-nucleotide polymorphism} (SNP) association studies. This extends +the earlier snpMatrix package, allowing for uncertainty in genotypes.") + (license license:gpl3))) + (define-public r-qvalue (package (name "r-qvalue") |