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| author | Simon Tournier <zimon.toutoune@gmail.com> | 2024-04-08 14:49:56 +0200 |
|---|---|---|
| committer | Christopher Baines <mail@cbaines.net> | 2024-04-09 17:04:02 +0100 |
| commit | cf29c427e90bd82556addf67885c276e067ce121 (patch) | |
| tree | c67d19e3b31d88cfd178d4bb859bca41d77739b7 /gnu/packages/bioinformatics.scm | |
| parent | ac3f7bad6768283a6a9e3739b9e893adcf03556e (diff) | |
| download | guix-cf29c427e90bd82556addf67885c276e067ce121.tar guix-cf29c427e90bd82556addf67885c276e067ce121.tar.gz | |
gnu: python-deeptools: Update to 3.5.5.
* gnu/packages/bioinformatics.scm (python-deeptools): Update to 3.5.5.
[build-system]: Replace by pyproject-build-system.
[arguments]: Add phase that fixes 'test/test_tools.py'.
Change-Id: Ibb51939275c96df2c4a1e248a03d683f2f4904ac
Signed-off-by: Christopher Baines <mail@cbaines.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
1 files changed, 19 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7861987704..452ec1d829 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4615,7 +4615,7 @@ interval trees with associated meta-data. It is primarily used by the (define-public python-deeptools (package (name "python-deeptools") - (version "3.4.3") + (version "3.5.5") (source (origin (method git-fetch) (uri (git-reference @@ -4624,8 +4624,23 @@ interval trees with associated meta-data. It is primarily used by the (file-name (git-file-name name version)) (sha256 (base32 - "0l09vyynz6s6w7fnyd94rpys4a6aja6kp4gli64pngdxdz3md1nl")))) - (build-system python-build-system) + "0mgcs03amrd5157drbm6ikdg0m0szrn9xbflariz2zrrnqpsai6s")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-test + (lambda _ + (substitute* "deeptools/test/test_tools.py" + (("e_ver = _p") + "e_ver = \".\" + _p + \"-real\"")) + (substitute* "deeptools/multiBigwigSummary.py" + (("version='multiBigwigSummary") + "version='%(prog)s")) + (substitute* "deeptools/plotCoverage.py" + (("version='plotCoverage") + "version='%(prog)s"))))))) (native-inputs (list python-mock python-nose)) (propagated-inputs @@ -4637,7 +4652,7 @@ interval trees with associated meta-data. It is primarily used by the python-pysam python-scipy python-deeptoolsintervals - python-plotly-2.4.1)) + python-plotly)) (home-page "https://pypi.org/project/deepTools/") (synopsis "Useful tools for exploring deep sequencing data") (description "This package addresses the challenge of handling large amounts |