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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-02-19 17:24:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-02-19 17:24:52 +0100 |
| commit | 80d3150c94a1b33072747a81020f805779530324 (patch) | |
| tree | 9607c038dee91477945b076e0f498684aa9a19ce /gnu/packages/bioinformatics.scm | |
| parent | 8999d2b44c5d26add1a60ea1fc84497b9ad501fd (diff) | |
| download | guix-80d3150c94a1b33072747a81020f805779530324.tar guix-80d3150c94a1b33072747a81020f805779530324.tar.gz | |
gnu: Add ngshmmalign.
* gnu/packages/bioinformatics.scm (ngshmmalign): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4e7e49fecf..a84c1c812c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7825,6 +7825,31 @@ clusters.") (home-page "https://sourceforge.net/projects/pardre/") (license license:gpl3+))) +(define-public ngshmmalign + (package + (name "ngshmmalign") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/cbg-ethz/ngshmmalign/" + "releases/download/" version + "/ngshmmalign-" version ".tar.bz2")) + (sha256 + (base32 + "0jryvlssi2r2ii1dxnx39yk6bh4yqgq010fnxrgfgbaj3ykijlzv")))) + (build-system cmake-build-system) + (arguments '(#:tests? #false)) ; there are none + (inputs + `(("boost" ,boost))) + (home-page "https://github.com/cbg-ethz/ngshmmalign/") + (synopsis "Profile HMM aligner for NGS reads") + (description + "ngshmmalign is a profile HMM aligner for NGS reads designed particularly +for small genomes (such as those of RNA viruses like HIV-1 and HCV) that +experience substantial biological insertions and deletions.") + (license license:gpl2+))) + (define-public ruby-bio-kseq (package (name "ruby-bio-kseq") |