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authorBen Woodcroft <donttrustben@gmail.com>2016-09-19 12:15:07 +1000
committerBen Woodcroft <donttrustben@gmail.com>2016-09-19 15:44:20 +1000
commit4b1a15282677b15a5949ec144567529f70260203 (patch)
tree01c9c358432ca491ed0a2b25b7dde38804beaaf8 /gnu/packages/bioinformatics.scm
parent8c8da1389e476356ce5086b5cff4874d41271b96 (diff)
downloadguix-4b1a15282677b15a5949ec144567529f70260203.tar
guix-4b1a15282677b15a5949ec144567529f70260203.tar.gz
gnu: Add python2-biopython-1.66.
* gnu/packages/bioinformatics.scm (python2-biopython-1.66): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm14
1 files changed, 14 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a8d2cf3ea2..5effc80a4c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -630,6 +630,20 @@ into separate processes; and more.")
(native-inputs `(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
+;; An outdated version of biopython is required for seqmagick, see
+;; https://github.com/fhcrc/seqmagick/issues/59
+;; When that issue has been resolved this package should be removed.
+(define python2-biopython-1.66
+ (package
+ (inherit python2-biopython)
+ (version "1.66")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "biopython" version))
+ (sha256
+ (base32
+ "1gdv92593klimg22icf5j9by7xiq86jnwzkpz4abaa05ylkdf6hp"))))))
+
(define-public bpp-core
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.