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| author | Afkhami, Navid <Navid.Afkhami@mdc-berlin.de> | 2024-06-19 14:53:24 +0000 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2024-06-30 10:48:50 +0200 |
| commit | 1731b45c51e1de1839a7b862ab50ba1c876e745f (patch) | |
| tree | f061503989d60ef40fb6e7101dfc146d4e8db579 /gnu/packages/bioinformatics.scm | |
| parent | 0e5ecc6868835151add861230314edc5c9897e97 (diff) | |
| download | guix-1731b45c51e1de1839a7b862ab50ba1c876e745f.tar guix-1731b45c51e1de1839a7b862ab50ba1c876e745f.tar.gz | |
gnu: Add r-cmdstanr.
* gnu/packages/bioinformatics.scm (r-cmdstanr): New variable.
Change-Id: Ic9e83486f7ab7f0e7075343af630c4dcecf597b5
Signed-off-by: Andreas Enge <andreas@enge.fr>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 36 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b6e7986a1f..a41c60738a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net> -;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de> +;;; Copyright © 2022, 2023, 2024 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com> ;;; @@ -11534,6 +11534,41 @@ tasks.") Pore-C concatemers.") (license license:gpl3)))) +(define-public r-cmdstanr + (let ((commit "a45d4f7d686aa6b57ce25f342a71eea79507f01c") + (revision "1")) + (package + (name "r-cmdstanr") + (version (git-version "0.8.1.9000" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/stan-dev/cmdstanr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "01vyh3sy704rs7yvaka2hp6vld0mdl7hbrs20dpbwidgm4ksrvsi")))) + (properties `((upstream-name . "cmdstanr"))) + (build-system r-build-system) + (propagated-inputs (list r-checkmate + r-data-table + r-jsonlite + r-posterior + r-processx + r-r6 + r-rlang + r-withr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/stan-dev/cmdstanr") + (synopsis "R interface to 'CmdStan'") + (description + "This package provides a lightweight interface to Stan +<https://mc-stan.org>. The @code{CmdStanR} interface is an alternative +to RStan that calls the command line interface for compilation and +running algorithms instead of interfacing with C++ via Rcpp'.") + (license license:bsd-3)))) + (define-public r-dnamcrosshyb ;; There aren't any releases. (let ((commit "fe8acb33667e81f00dcb84e0fa75c87ab2db5d8f") |