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authorzimoun <zimon.toutoune@gmail.com>2020-12-23 19:06:30 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-29 17:40:28 +0100
commit8f1237c3508e36dac62edce5596f0f2f856c9690 (patch)
treedda2770a28f507b31373c411b6465be3cee07d69 /gnu/packages/bioconductor.scm
parent9534e7b7061f672d4b8a0d4cafd3b1be7908a613 (diff)
downloadguix-8f1237c3508e36dac62edce5596f0f2f856c9690.tar
guix-8f1237c3508e36dac62edce5596f0f2f856c9690.tar.gz
gnu: r-ldblock: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-ldblock): Move from here... * gnu/packages/bioconductor.scm (r-ldblock): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1bf9a49272..40a02dbe7f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9405,6 +9405,40 @@ maintaining all essential pathway attributes. The package offers
functionalities including parsing, graph operation, visualization and etc.")
(license license:gpl2+)))
+(define-public r-ldblock
+ (package
+ (name "r-ldblock")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ldblock" version))
+ (sha256
+ (base32
+ "09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
+ ("r-ensembldb" ,r-ensembldb)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-httr" ,r-httr)
+ ("r-matrix" ,r-matrix)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-snpstats" ,r-snpstats)
+ ("r-variantannotation" ,r-variantannotation)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/ldblock")
+ (synopsis "Data structures for linkage disequilibrium measures in populations")
+ (description
+ "This package defines data structures for @dfn{linkage
+disequilibrium} (LD) measures in populations. Its purpose is to simplify
+handling of existing population-level data for the purpose of flexibly
+defining LD blocks.")
+ (license license:artistic2.0)))
+
(define-public r-pathview
(package
(name "r-pathview")