aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2020-12-17 11:37:17 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-17 11:37:17 +0100
commit1abb6a2a782d23cc73e81472d87e72cc81c0ba42 (patch)
tree846aa8d7f2fd7889d4d73b0c7e7f1a224b0a2cd5 /gnu/packages/bioconductor.scm
parent17d95689b4d152a53fbb88c49b8693f967cff881 (diff)
downloadguix-1abb6a2a782d23cc73e81472d87e72cc81c0ba42.tar
guix-1abb6a2a782d23cc73e81472d87e72cc81c0ba42.tar.gz
gnu: r-cummerbund: Move from "experiment" to "package" section.
* gnu/packages/bioconductor.scm (r-cummerbund): Move variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm60
1 files changed, 30 insertions, 30 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c84bdfd681..a5726f06ad 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1156,36 +1156,6 @@ mouse, rat and budding yeast. Mapping data between common gene IDs for budding
yeast are also included.")
(license license:gpl2+)))
-(define-public r-cummerbund
- (package
- (name "r-cummerbund")
- (version "2.32.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "cummeRbund" version))
- (sha256
- (base32
- "1x7rby50api1c66al6a0i92q82ydjmh3h8l2k7hj0ffpn8c5pdgj"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-fastcluster" ,r-fastcluster)
- ("r-ggplot2" ,r-ggplot2)
- ("r-gviz" ,r-gviz)
- ("r-plyr" ,r-plyr)
- ("r-reshape2" ,r-reshape2)
- ("r-rsqlite" ,r-rsqlite)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://bioconductor.org/packages/cummeRbund/")
- (synopsis "Analyze Cufflinks high-throughput sequencing data")
- (description "This package allows for persistent storage, access,
-exploration, and manipulation of Cufflinks high-throughput sequencing
-data. In addition, provides numerous plotting functions for commonly
-used visualizations.")
- (license license:artistic2.0)))
-
(define-public r-curatedtcgadata
(package
(name "r-curatedtcgadata")
@@ -1289,6 +1259,36 @@ experiment types where it is important to have a framework in order to inspect
how the coverage distributed across the genome.")
(license license:artistic2.0)))
+(define-public r-cummerbund
+ (package
+ (name "r-cummerbund")
+ (version "2.32.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "cummeRbund" version))
+ (sha256
+ (base32
+ "1x7rby50api1c66al6a0i92q82ydjmh3h8l2k7hj0ffpn8c5pdgj"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-fastcluster" ,r-fastcluster)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gviz" ,r-gviz)
+ ("r-plyr" ,r-plyr)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/cummeRbund/")
+ (synopsis "Analyze Cufflinks high-throughput sequencing data")
+ (description "This package allows for persistent storage, access,
+exploration, and manipulation of Cufflinks high-throughput sequencing
+data. In addition, provides numerous plotting functions for commonly
+used visualizations.")
+ (license license:artistic2.0)))
+
(define-public r-affycomp
(package
(name "r-affycomp")