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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-04-19 14:10:03 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-04-22 11:29:30 +0200 |
| commit | fbfd58b5bf8001642a1019c5231b7d20a098cb45 (patch) | |
| tree | 94093789f2c936594101791824fc1616bc8e0ca6 | |
| parent | 7ca1a0203080840ddb2070f63a85ce2c76136709 (diff) | |
| download | guix-fbfd58b5bf8001642a1019c5231b7d20a098cb45.tar guix-fbfd58b5bf8001642a1019c5231b7d20a098cb45.tar.gz | |
gnu: Add python-pims.
* gnu/packages/image-processing.scm (python-pims): New variable.
Change-Id: I33e89dd865a38b526a1f766cf321a6c67a170a36
| -rw-r--r-- | gnu/packages/image-processing.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm index 00b6311c23..ceef83f3b1 100644 --- a/gnu/packages/image-processing.scm +++ b/gnu/packages/image-processing.scm @@ -1704,6 +1704,46 @@ purposes.") segmentation.") (license license:expat))) +(define-public python-pims + (package + (name "python-pims") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PIMS" version)) + (sha256 + (base32 "0fsg353mbbj1ad06nwrp8p9xcrzy6rca6b52nvlbraaf3m309dz2")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + ;; We don't have all the (sometimes very large) data files, so we skip + ;; these tests. + '(list "--ignore=pims/tests/test_imseq.py" + "--ignore=pims/tests/test_norpix.py" + "-k" + (string-append " not TestImageReaderTIFF" + " and not TestOpenFiles" + " and not TestSpeStack" + " and not TestTiffStack_pil" + " and not TestTiffStack_tifffile" + " and not TestVideo_ImageIO")))) + (propagated-inputs + (list python-imageio python-numpy python-slicerator)) + (native-inputs (list python-pytest)) + (home-page "https://github.com/soft-matter/pims") + (synopsis "Python Image Sequence") + (description "Scientific video can be packaged in various ways: familiar +video formats like @file{.AVI} and @file{.MOV}, folders full of numbered +images, or \"stacks\" of TIFF images. Each of these requires a separate +Python module. And, once loaded, they have different methods for accessing +individual images, looping through the images in bulk, accessing a specific +range, or dealing with multidimensional files. PIMS can do all of these using +a consistent interface, handling the differences between different inputs +invisibly.") + (license license:bsd-3))) + (define-public python-spatial-image (package (name "python-spatial-image") |