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| author | Afkhami, Navid <Navid.Afkhami@mdc-berlin.de> | 2024-09-26 10:37:18 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-11-01 12:10:30 +0100 |
| commit | e96af11f2b524a8ded2307987cb21393eb724d90 (patch) | |
| tree | f8dda185213c1fa85c278ff4d9f9724deeae2170 | |
| parent | aa7511eeb41b17de3c3eae96fcd0d68d1b374b3b (diff) | |
| download | guix-e96af11f2b524a8ded2307987cb21393eb724d90.tar guix-e96af11f2b524a8ded2307987cb21393eb724d90.tar.gz | |
gnu: Add r-cellchat-2.
* gnu/packages/bioinformatics.scm (r-cellchat-2): New variable.
Change-Id: Iae15f373aefa1c2a0899d5271cf8dddbbfdfa2bd
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 66 |
1 files changed, 66 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e0e8ce81b9..1cfcc4aa56 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14342,6 +14342,72 @@ droplet sequencing. It has been particularly tailored for Drop-seq.") communication networks from scRNA-seq data.") (license license:gpl3)))) +(define-public r-cellchat-2 + (let ((commit "b05405af0f4f2cac99f2211e888d42de4c5a9d59") + (revision "1")) + (package + (name "r-cellchat") + (version (git-version "2.1.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jinworks/CellChat") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "14s7bl70xi21ivqr1c3qx6kjf1ndlyxag880xldqkfsqpksvyvkc")) + (snippet '(for-each delete-file + '("src/CellChat.so" "src/CellChat_Rcpp.o" + "src/RcppExports.o"))))) + (properties `((upstream-name . "CellChat"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-biocneighbors + r-bslib + r-circlize + r-colorspace + r-complexheatmap + r-cowplot + r-dplyr + r-fnn + r-future + r-future-apply + r-ggalluvial + r-ggnetwork + r-ggplot2 + r-ggpubr + r-ggrepel + r-igraph + r-irlba + r-magrittr + r-matrix + r-nmf + r-patchwork + r-pbapply + r-plotly + r-plyr + r-rcolorbrewer + r-rcpp + r-rcppeigen + r-reshape2 + r-reticulate + r-rspectra + r-scales + r-shape + r-shiny + r-sna + r-stringr + r-svglite)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/jinworks/CellChat") + (synopsis + "Inference of cell-cell communication from single-cell and transcriptomics") + (description + "This R tool infers, visualizes, and analyzes cell-cell communication networks. +It supports scRNA-seq and spatially resolved transcriptomics data.") + (license license:gpl3)))) + (define-public r-copykat (let ((commit ;no tag "256de33dfc1b80a1a0ac9e098c5557f95a4e0d53") |